Wall clock time and date at job start Mon Mar 30 2020 17:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47072 * 2 1 4 4 C 1.46901 * 110.99858 * 283.16854 * 3 2 1 5 5 C 1.50698 * 109.46962 * 76.63222 * 4 3 2 6 6 H 1.07995 * 120.00019 * 1.17583 * 5 4 3 7 7 C 1.37879 * 119.99907 * 181.17242 * 5 4 3 8 8 N 1.31513 * 119.99805 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99932 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47251 * 269.99982 * 9 7 5 11 11 H 1.48500 * 109.46991 * 30.00289 * 9 7 5 12 12 H 1.48505 * 109.46684 * 149.99894 * 9 7 5 13 13 C 1.46905 * 110.99717 * 159.21939 * 3 2 1 14 14 H 1.09003 * 110.43364 * 177.22011 * 13 3 2 15 15 C 1.54631 * 110.48433 * 299.75418 * 13 3 2 16 16 C 1.54699 * 101.66450 * 143.39748 * 15 13 3 17 17 N 1.46761 * 105.53354 * 334.74189 * 16 15 13 18 18 C 1.46501 * 124.34696 * 196.94228 * 17 16 15 19 19 C 1.53000 * 109.47172 * 270.00298 * 18 17 16 20 20 C 1.34416 * 111.30387 * 16.92316 * 17 16 15 21 21 O 1.21284 * 124.94695 * 179.54862 * 20 17 16 22 22 H 1.09005 * 109.46888 * 309.60198 * 1 2 3 23 23 H 1.08992 * 109.47063 * 69.60177 * 1 2 3 24 24 H 1.09001 * 109.46980 * 189.60353 * 1 2 3 25 25 H 1.08997 * 109.47055 * 239.99871 * 2 1 3 26 26 H 1.08998 * 109.46881 * 120.00108 * 2 1 3 27 27 H 1.09001 * 109.47527 * 316.62773 * 4 3 2 28 28 H 1.09006 * 109.46949 * 196.62895 * 4 3 2 29 29 H 0.97007 * 119.99655 * 180.02562 * 8 7 5 30 30 H 1.08990 * 110.97283 * 261.59485 * 15 13 3 31 31 H 1.09003 * 110.96917 * 25.36460 * 15 13 3 32 32 H 1.09000 * 110.29173 * 215.68054 * 16 15 13 33 33 H 1.09000 * 110.20834 * 93.75772 * 16 15 13 34 34 H 1.09000 * 109.47466 * 30.00658 * 18 17 16 35 35 H 1.08998 * 109.46918 * 150.00352 * 18 17 16 36 36 H 1.09005 * 109.46937 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.47029 * 300.00008 * 19 18 17 38 38 H 1.08998 * 109.47156 * 60.00199 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9006 1.9854 -1.3354 5 6 0.4633 2.3592 -1.5917 6 1 -0.2833 2.1870 -0.8307 7 6 0.1017 2.9209 -2.7978 8 7 -1.1525 3.2475 -3.0213 9 14 1.3934 3.2194 -4.1139 10 1 1.9738 4.5750 -3.9394 11 1 2.4678 2.2015 -3.9927 12 1 0.7652 3.1187 -5.4557 13 6 3.4041 1.4538 0.4866 14 1 3.7745 2.4778 0.4366 15 6 3.4967 0.9149 1.9330 16 6 4.8654 0.1942 1.9111 17 7 5.0970 -0.1672 0.5077 18 6 6.0775 -1.1597 0.0607 19 6 7.4195 -0.4711 -0.1960 20 6 4.2936 0.5292 -0.3148 21 8 4.2839 0.4312 -1.5237 22 1 -0.3633 0.6551 0.7919 23 1 -0.3633 0.3582 -0.9632 24 1 -0.3633 -1.0133 0.1714 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2290 1.2677 -2.0872 28 1 2.5233 2.8784 -1.3891 29 1 -1.4070 3.6424 -3.8700 30 1 3.4952 1.7317 2.6545 31 1 2.6896 0.2121 2.1398 32 1 4.8307 -0.7020 2.5306 33 1 5.6497 0.8648 2.2624 34 1 6.2011 -1.9209 0.8310 35 1 5.7273 -1.6275 -0.8594 36 1 8.1488 -1.2096 -0.5291 37 1 7.2958 0.2900 -0.9664 38 1 7.7697 -0.0033 0.7241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595331799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:10 Heat of formation + Delta-G solvation = -18.235871 kcal Electronic energy + Delta-G solvation = -18388.255247 eV Core-core repulsion = 15652.243223 eV Total energy + Delta-G solvation = -2736.012025 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.53851 -36.62532 -36.19703 -33.32622 -32.16760 -30.03395 -29.09636 -27.72990 -25.51569 -23.53458 -22.43419 -21.23001 -20.21485 -18.82140 -16.84945 -16.61948 -16.21108 -15.49585 -14.66830 -14.40695 -14.11132 -13.82499 -13.46619 -13.36540 -12.85844 -12.75931 -12.41203 -12.19270 -11.90924 -11.73296 -11.49050 -11.33168 -11.17776 -11.04913 -10.75700 -10.49654 -10.19815 -10.02346 -9.70872 -9.60584 -9.00760 -8.64342 -8.42051 -7.32859 -5.94314 -3.89288 2.87736 3.09403 3.39510 3.46813 3.59627 4.42083 4.55829 4.61343 4.77141 4.99693 5.06122 5.15268 5.19045 5.26519 5.38408 5.42658 5.57772 5.63887 5.75768 5.80200 6.00304 6.04207 6.10269 6.22094 6.36455 6.51861 6.68322 6.90284 6.91722 7.16514 7.31262 7.40253 7.72101 7.89662 8.02138 8.47524 8.74866 9.14833 9.68629 11.17644 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.007880 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.361575 B = 3552.436945 C = 4152.791516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 N -0.497 5.497 4 C 0.157 3.843 5 C -0.506 4.506 6 H 0.091 0.909 7 C 0.069 3.931 8 N -0.903 5.903 9 Si 0.863 3.137 10 H -0.278 1.278 11 H -0.260 1.260 12 H -0.288 1.288 13 C 0.051 3.949 14 H 0.112 0.888 15 C -0.128 4.128 16 C 0.105 3.895 17 N -0.628 5.628 18 C 0.122 3.878 19 C -0.168 4.168 20 C 0.486 3.514 21 O -0.518 6.518 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.033 0.967 25 H 0.029 0.971 26 H 0.053 0.947 27 H 0.015 0.985 28 H 0.017 0.983 29 H 0.262 0.738 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.943 -8.069 11.322 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 N -0.220 5.220 4 C 0.031 3.969 5 C -0.544 4.544 6 H 0.109 0.891 7 C -0.132 4.132 8 N -0.543 5.543 9 Si 0.690 3.310 10 H -0.204 1.204 11 H -0.184 1.184 12 H -0.214 1.214 13 C -0.062 4.062 14 H 0.130 0.870 15 C -0.166 4.166 16 C -0.019 4.019 17 N -0.364 5.364 18 C -0.001 4.001 19 C -0.226 4.226 20 C 0.272 3.728 21 O -0.392 6.392 22 H 0.075 0.925 23 H 0.110 0.890 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.551 -7.819 10.803 19.012 hybrid contribution 1.328 -0.219 -1.311 1.879 sum 14.879 -8.038 9.492 19.393 Atomic orbital electron populations 1.21970 0.94134 0.98905 1.05316 1.22066 0.97412 0.88958 0.98721 1.62477 1.12564 1.17402 1.29597 1.20354 0.98305 0.94079 0.84122 1.21230 0.92381 1.39494 1.01276 0.89096 1.24845 0.94987 0.95369 0.98002 1.69890 1.16225 1.43594 1.24557 0.87015 0.82944 0.79363 0.81656 1.20384 1.18441 1.21394 1.22710 0.90471 0.99128 0.93925 0.87032 1.22828 0.96154 1.01071 0.96539 1.22095 0.97697 0.99712 0.82355 1.48505 1.38561 1.41447 1.07934 1.21267 0.88041 0.90178 1.00586 1.22148 0.96929 1.01475 1.02064 1.22481 0.80686 0.81788 0.87867 1.90733 1.68180 1.67092 1.13159 0.92537 0.88984 0.94827 0.95286 0.92900 0.96736 0.96468 0.92845 0.88925 0.89040 0.90830 0.91479 0.90827 0.90378 0.91746 0.92255 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.68 37.16 0.32 -2.61 16 2 C 0.06 1.11 4.69 -3.83 -0.02 1.09 16 3 N -0.50 -10.50 4.46 -228.09 -1.02 -11.52 16 4 C 0.16 4.03 3.10 -4.98 -0.02 4.01 16 5 C -0.51 -14.51 7.86 -34.44 -0.27 -14.78 16 6 H 0.09 2.74 6.13 -52.49 -0.32 2.42 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 9 Si 0.86 22.78 27.49 -169.99 -4.67 18.11 16 10 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.26 -7.00 6.51 56.52 0.37 -6.63 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 13 C 0.05 0.87 2.99 -67.72 -0.20 0.67 16 14 H 0.11 1.88 7.94 -51.93 -0.41 1.47 16 15 C -0.13 -1.53 6.57 -24.98 -0.16 -1.69 16 16 C 0.10 1.05 7.35 -3.01 -0.02 1.03 16 17 N -0.63 -8.51 2.93 -172.28 -0.51 -9.01 16 18 C 0.12 1.38 6.65 -4.04 -0.03 1.35 16 19 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16 20 C 0.49 8.83 6.38 -10.86 -0.07 8.76 16 21 O -0.52 -11.83 15.37 5.55 0.09 -11.75 16 22 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 23 H 0.09 2.21 5.74 -51.93 -0.30 1.91 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.03 0.64 7.26 -51.93 -0.38 0.26 16 26 H 0.05 0.88 5.59 -51.93 -0.29 0.59 16 27 H 0.01 0.41 5.34 -51.93 -0.28 0.14 16 28 H 0.02 0.45 7.28 -51.93 -0.38 0.07 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.09 1.12 5.82 -51.93 -0.30 0.82 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 295.45 15.07 4.45 4.45 Total: -1.00 -33.96 295.45 -7.11 -41.07 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.04 Total: -2.51 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -0.18 Total: -1.53 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.75 Total: -47.84 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.11 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.96 -7.11 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595331799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.831 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds