Wall clock time and date at job start Mon Mar 30 2020 17:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47631 * 2 1 4 4 C 1.53002 * 109.47062 * 239.99771 * 2 1 3 5 5 C 1.50700 * 109.47131 * 169.64134 * 4 2 1 6 6 H 1.07999 * 120.00120 * 354.50811 * 5 4 2 7 7 C 1.37881 * 120.00257 * 174.51249 * 5 4 2 8 8 N 1.31514 * 119.99457 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00039 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47341 * 89.99651 * 9 7 5 11 11 H 1.48502 * 109.47002 * 209.99587 * 9 7 5 12 12 H 1.48498 * 109.47332 * 329.99370 * 9 7 5 13 13 N 1.46900 * 109.46902 * 120.00062 * 2 1 3 14 14 C 1.45594 * 111.00015 * 183.28190 * 13 2 1 15 15 C 1.53143 * 110.68480 * 59.69559 * 14 13 2 16 16 C 1.51493 * 108.55784 * 84.07632 * 15 14 13 17 17 O 1.21284 * 120.05481 * 110.18188 * 16 15 14 18 18 N 1.33634 * 119.89384 * 290.38757 * 16 15 14 19 19 C 1.46497 * 119.94734 * 179.53522 * 18 16 15 20 20 C 1.47253 * 120.10643 * 359.25386 * 18 16 15 21 21 C 1.45558 * 111.00077 * 313.87327 * 13 2 1 22 22 H 1.08998 * 109.47480 * 300.00246 * 1 2 3 23 23 H 1.09005 * 109.47104 * 60.00256 * 1 2 3 24 24 H 1.09003 * 109.47631 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47397 * 289.63775 * 4 2 1 26 26 H 1.09002 * 109.47415 * 49.63873 * 4 2 1 27 27 H 0.97001 * 119.99545 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.22888 * 180.02562 * 14 13 2 29 29 H 1.08994 * 109.23322 * 299.38793 * 14 13 2 30 30 H 1.09000 * 109.68132 * 203.86624 * 15 14 13 31 31 H 1.08998 * 109.68581 * 324.42596 * 15 14 13 32 32 H 1.08997 * 109.47298 * 269.72426 * 19 18 16 33 33 H 1.09006 * 109.47410 * 29.72143 * 19 18 16 34 34 H 1.08998 * 109.47594 * 149.71947 * 19 18 16 35 35 H 1.08993 * 109.62396 * 190.67323 * 20 18 16 36 36 H 1.09001 * 109.61763 * 311.22857 * 20 18 16 37 37 H 1.09004 * 109.20205 * 180.18172 * 21 13 2 38 38 H 1.08994 * 109.20220 * 60.88832 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5251 -0.5039 -1.3837 6 1 4.0373 0.1605 -0.7037 7 6 4.2300 -1.1533 -2.3749 8 7 3.6062 -1.9628 -3.2027 9 14 6.0707 -0.8833 -2.5420 10 1 6.7947 -1.8831 -1.7164 11 1 6.4664 -1.0367 -3.9651 12 1 6.4146 0.4846 -2.0774 13 7 2.0195 -0.6925 1.1994 14 6 3.4728 -0.6450 1.2727 15 6 3.9650 0.8045 1.3195 16 6 3.9086 1.2867 2.7545 17 8 4.9350 1.4854 3.3693 18 7 2.7260 1.4889 3.3432 19 6 2.6701 1.9455 4.7341 20 6 1.4792 1.2595 2.5941 21 6 1.3054 -0.2470 2.3870 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8354 -1.7884 -1.1616 26 1 1.5336 -0.3254 -2.1296 27 1 4.1022 -2.4199 -3.8999 28 1 3.8043 -1.1662 2.1707 29 1 3.8929 -1.1386 0.3964 30 1 4.9912 0.8557 0.9557 31 1 3.3233 1.4303 0.6992 32 1 2.6437 1.0822 5.3991 33 1 3.5518 2.5472 4.9548 34 1 1.7733 2.5467 4.8834 35 1 0.6344 1.6510 3.1608 36 1 1.5367 1.7578 1.6264 37 1 1.6931 -0.7757 3.2579 38 1 0.2453 -0.4734 2.2739 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595771703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:18 Heat of formation + Delta-G solvation = -12.245459 kcal Electronic energy + Delta-G solvation = -18799.651019 eV Core-core repulsion = 16063.898758 eV Total energy + Delta-G solvation = -2735.752261 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42478 -37.91752 -35.32670 -32.97294 -32.07065 -30.64687 -28.58656 -27.22651 -25.78755 -23.74484 -23.21231 -21.84261 -18.78259 -18.64711 -17.00892 -16.68902 -15.81468 -15.32547 -15.05467 -14.88536 -14.40525 -13.56246 -13.27250 -12.98868 -12.83613 -12.41157 -12.23581 -12.01157 -11.88523 -11.67050 -11.46859 -11.20841 -11.08183 -10.80723 -10.75822 -10.45321 -10.40043 -10.07855 -9.34012 -9.15673 -8.92144 -8.75838 -8.35442 -7.37605 -6.03839 -4.01419 2.94301 3.18700 3.30863 3.38345 3.41130 4.42711 4.49389 4.78249 5.07511 5.23881 5.29460 5.32662 5.35481 5.52474 5.66795 5.70000 5.76823 5.79420 5.82969 5.89799 6.07878 6.12918 6.20676 6.32655 6.58473 6.63748 6.76990 6.93664 7.19680 7.47000 7.53394 7.66837 7.94270 8.04601 8.08362 8.38304 8.43873 9.00233 9.56798 11.06851 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025710 B = 0.009166 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.819319 B = 3054.080361 C = 3934.019801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.083 3.917 3 H 0.034 0.966 4 C 0.028 3.972 5 C -0.528 4.528 6 H 0.071 0.929 7 C 0.061 3.939 8 N -0.888 5.888 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.538 5.538 14 C 0.057 3.943 15 C -0.171 4.171 16 C 0.514 3.486 17 O -0.559 6.559 18 N -0.617 5.617 19 C 0.085 3.915 20 C 0.070 3.930 21 C 0.043 3.957 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.017 0.983 27 H 0.260 0.740 28 H 0.049 0.951 29 H 0.151 0.849 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.533 5.496 10.559 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 H 0.051 0.949 4 C -0.009 4.009 5 C -0.566 4.566 6 H 0.089 0.911 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.707 3.293 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.260 5.260 14 C -0.071 4.071 15 C -0.212 4.212 16 C 0.304 3.696 17 O -0.438 6.438 18 N -0.351 5.351 19 C -0.057 4.057 20 C -0.055 4.055 21 C -0.086 4.086 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.168 0.832 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.079 5.012 10.693 13.282 hybrid contribution 1.118 1.027 0.005 1.518 sum -4.961 6.039 10.699 13.249 Atomic orbital electron populations 1.22021 0.96500 1.01856 1.00244 1.21843 0.92804 0.95923 0.91862 0.94862 1.19178 0.95441 0.96681 0.89633 1.21563 0.93797 1.26712 1.14493 0.91123 1.24987 0.97987 0.95400 0.95728 1.69961 1.35758 1.28885 1.18084 0.86782 0.86197 0.78845 0.77460 1.20432 1.21262 1.19739 1.59963 1.05576 1.58716 1.01745 1.22604 0.86641 0.92305 1.05546 1.22779 1.05322 1.01886 0.91224 1.21171 0.82448 0.75881 0.90112 1.90642 1.33805 1.52420 1.66908 1.47865 1.06718 1.67434 1.13096 1.21593 1.02475 0.99457 0.82224 1.22749 0.85654 0.99878 0.97201 1.22380 1.00257 0.91727 0.94254 0.93939 0.92710 0.92185 0.94899 0.96490 0.92986 0.93227 0.83217 0.88395 0.88551 0.93099 0.90900 0.91664 0.90065 0.90070 0.91313 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.37 37.15 0.31 -1.94 16 2 C 0.08 1.51 1.57 -67.72 -0.11 1.41 16 3 H 0.03 0.62 4.54 -51.93 -0.24 0.39 16 4 C 0.03 0.66 4.54 -27.88 -0.13 0.53 16 5 C -0.53 -13.29 6.23 -34.44 -0.21 -13.51 16 6 H 0.07 1.68 3.77 -52.49 -0.20 1.48 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 9 Si 0.88 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.54 -9.45 4.45 -228.73 -1.02 -10.46 16 14 C 0.06 1.08 5.00 -4.46 -0.02 1.06 16 15 C -0.17 -3.14 3.75 -27.42 -0.10 -3.24 16 16 C 0.51 9.34 6.84 -11.10 -0.08 9.26 16 17 O -0.56 -11.87 16.64 5.55 0.09 -11.78 16 18 N -0.62 -9.03 2.87 -180.92 -0.52 -9.55 16 19 C 0.09 1.01 10.44 59.85 0.62 1.64 16 20 C 0.07 0.88 5.22 -3.60 -0.02 0.86 16 21 C 0.04 0.60 5.11 -4.52 -0.02 0.58 16 22 H 0.04 0.52 5.87 -51.93 -0.30 0.22 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.05 0.93 7.88 -51.93 -0.41 0.52 16 29 H 0.15 3.34 4.63 -51.93 -0.24 3.09 16 30 H 0.10 1.90 7.87 -51.93 -0.41 1.49 16 31 H 0.10 1.76 4.59 -51.93 -0.24 1.52 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.96 7.39 -51.93 -0.38 0.57 16 34 H 0.06 0.58 7.86 -51.93 -0.41 0.17 16 35 H 0.08 0.78 7.78 -51.93 -0.40 0.38 16 36 H 0.08 1.11 5.15 -51.93 -0.27 0.84 16 37 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 38 H 0.09 1.06 6.22 -51.93 -0.32 0.73 16 LS Contribution 281.24 15.07 4.24 4.24 Total: -1.00 -29.69 281.24 -6.83 -36.52 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.49 Total: 1.76 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 0.15 Total: -1.82 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.80 Total: -44.63 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.69 -6.83 -36.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595771703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.275 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds