Wall clock time and date at job start Mon Mar 30 2020 17:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47631 * 2 1 4 4 C 1.53002 * 109.47062 * 239.99771 * 2 1 3 5 5 C 1.50700 * 109.47131 * 169.64134 * 4 2 1 6 6 H 1.07999 * 120.00120 * 354.50811 * 5 4 2 7 7 C 1.37881 * 120.00257 * 174.51249 * 5 4 2 8 8 N 1.31514 * 119.99457 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00039 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47341 * 89.99651 * 9 7 5 11 11 H 1.48502 * 109.47002 * 209.99587 * 9 7 5 12 12 H 1.48498 * 109.47332 * 329.99370 * 9 7 5 13 13 N 1.46900 * 109.46902 * 120.00062 * 2 1 3 14 14 C 1.45594 * 111.00015 * 183.28190 * 13 2 1 15 15 C 1.53143 * 110.68480 * 59.69559 * 14 13 2 16 16 C 1.51493 * 108.55784 * 84.07632 * 15 14 13 17 17 O 1.21284 * 120.05481 * 110.18188 * 16 15 14 18 18 N 1.33634 * 119.89384 * 290.38757 * 16 15 14 19 19 C 1.46497 * 119.94734 * 179.53522 * 18 16 15 20 20 C 1.47253 * 120.10643 * 359.25386 * 18 16 15 21 21 C 1.45558 * 111.00077 * 313.87327 * 13 2 1 22 22 H 1.08998 * 109.47480 * 300.00246 * 1 2 3 23 23 H 1.09005 * 109.47104 * 60.00256 * 1 2 3 24 24 H 1.09003 * 109.47631 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47397 * 289.63775 * 4 2 1 26 26 H 1.09002 * 109.47415 * 49.63873 * 4 2 1 27 27 H 0.97001 * 119.99545 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.22888 * 180.02562 * 14 13 2 29 29 H 1.08994 * 109.23322 * 299.38793 * 14 13 2 30 30 H 1.09000 * 109.68132 * 203.86624 * 15 14 13 31 31 H 1.08998 * 109.68581 * 324.42596 * 15 14 13 32 32 H 1.08997 * 109.47298 * 269.72426 * 19 18 16 33 33 H 1.09006 * 109.47410 * 29.72143 * 19 18 16 34 34 H 1.08998 * 109.47594 * 149.71947 * 19 18 16 35 35 H 1.08993 * 109.62396 * 190.67323 * 20 18 16 36 36 H 1.09001 * 109.61763 * 311.22857 * 20 18 16 37 37 H 1.09004 * 109.20205 * 180.18172 * 21 13 2 38 38 H 1.08994 * 109.20220 * 60.88832 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5251 -0.5039 -1.3837 6 1 4.0373 0.1605 -0.7037 7 6 4.2300 -1.1533 -2.3749 8 7 3.6062 -1.9628 -3.2027 9 14 6.0707 -0.8833 -2.5420 10 1 6.7947 -1.8831 -1.7164 11 1 6.4664 -1.0367 -3.9651 12 1 6.4146 0.4846 -2.0774 13 7 2.0195 -0.6925 1.1994 14 6 3.4728 -0.6450 1.2727 15 6 3.9650 0.8045 1.3195 16 6 3.9086 1.2867 2.7545 17 8 4.9350 1.4854 3.3693 18 7 2.7260 1.4889 3.3432 19 6 2.6701 1.9455 4.7341 20 6 1.4792 1.2595 2.5941 21 6 1.3054 -0.2470 2.3870 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8354 -1.7884 -1.1616 26 1 1.5336 -0.3254 -2.1296 27 1 4.1022 -2.4199 -3.8999 28 1 3.8043 -1.1662 2.1707 29 1 3.8929 -1.1386 0.3964 30 1 4.9912 0.8557 0.9557 31 1 3.3233 1.4303 0.6992 32 1 2.6437 1.0822 5.3991 33 1 3.5518 2.5472 4.9548 34 1 1.7733 2.5467 4.8834 35 1 0.6344 1.6510 3.1608 36 1 1.5367 1.7578 1.6264 37 1 1.6931 -0.7757 3.2579 38 1 0.2453 -0.4734 2.2739 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595771703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:18 Heat of formation + Delta-G solvation = -32.995509 kcal Electronic energy + Delta-G solvation = -18800.550809 eV Core-core repulsion = 16063.898758 eV Total energy + Delta-G solvation = -2736.652051 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77346 -39.36538 -36.65051 -34.85583 -33.53771 -32.17014 -29.78104 -28.90276 -26.97075 -25.26575 -24.65692 -23.46708 -20.16075 -19.99652 -18.73209 -18.03757 -17.35625 -16.68682 -16.60424 -16.27103 -16.07000 -14.98221 -14.65640 -14.21643 -14.10597 -13.81923 -13.62814 -13.45911 -13.36779 -13.11736 -12.89045 -12.77892 -12.60538 -12.44940 -12.24273 -12.21346 -11.85626 -11.60045 -10.96973 -10.86184 -10.71247 -10.41103 -9.99470 -8.74003 -8.10887 -6.10878 1.40450 1.43810 1.50610 1.53627 2.04063 2.44564 3.13074 3.23787 3.50847 4.00052 4.07334 4.17368 4.25227 4.37509 4.42348 4.49963 4.50909 4.63323 4.64757 4.70240 4.81017 4.88591 5.03836 5.08795 5.19627 5.35416 5.44898 5.50385 5.52865 5.65159 5.72410 5.96319 6.22447 6.33570 6.49746 6.71202 6.99921 7.09161 7.49656 9.00988 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025710 B = 0.009166 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.819319 B = 3054.080361 C = 3934.019801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.093 3.907 3 H 0.037 0.963 4 C 0.032 3.968 5 C -0.521 4.521 6 H 0.083 0.917 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.934 3.066 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.550 5.550 14 C 0.067 3.933 15 C -0.164 4.164 16 C 0.512 3.488 17 O -0.598 6.598 18 N -0.609 5.609 19 C 0.081 3.919 20 C 0.070 3.930 21 C 0.044 3.956 22 H 0.081 0.919 23 H 0.056 0.944 24 H 0.053 0.947 25 H -0.001 1.001 26 H -0.006 1.006 27 H 0.258 0.742 28 H 0.050 0.950 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 6.966 12.647 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.014 4.014 3 H 0.054 0.946 4 C -0.006 4.006 5 C -0.559 4.559 6 H 0.101 0.899 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.761 3.239 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.273 5.273 14 C -0.061 4.061 15 C -0.206 4.206 16 C 0.301 3.699 17 O -0.480 6.480 18 N -0.340 5.340 19 C -0.061 4.061 20 C -0.054 4.054 21 C -0.085 4.085 22 H 0.100 0.900 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.017 0.983 26 H 0.012 0.988 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.720 6.500 12.807 16.306 hybrid contribution 1.543 0.556 -0.577 1.738 sum -6.177 7.056 12.231 15.412 Atomic orbital electron populations 1.21960 0.93513 1.02148 1.02307 1.21596 0.95076 0.94938 0.89835 0.94585 1.19068 0.94681 0.95082 0.91755 1.22016 0.94888 1.25505 1.13476 0.89914 1.25707 1.01703 0.95720 0.96000 1.70085 1.37164 1.30677 1.19221 0.85900 0.81947 0.78972 0.77094 1.20355 1.21439 1.18869 1.59830 1.04674 1.59634 1.03162 1.22212 0.87953 0.92356 1.03613 1.22625 1.04263 1.01507 0.92227 1.20981 0.83218 0.76017 0.89675 1.90624 1.35397 1.54460 1.67506 1.47942 1.06193 1.65675 1.14234 1.21819 1.03657 1.00165 0.80412 1.22907 0.86020 0.98779 0.97654 1.22495 1.01017 0.92738 0.92208 0.90007 0.92538 0.92790 0.98300 0.98762 0.93290 0.93192 0.86921 0.90106 0.88324 0.92176 0.92583 0.87662 0.85363 0.90723 0.91275 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 8.37 71.98 0.60 -3.27 16 2 C 0.09 3.27 1.57 44.91 0.07 3.34 16 3 H 0.04 1.28 4.54 -2.39 -0.01 1.27 16 4 C 0.03 1.52 4.54 29.85 0.14 1.65 16 5 C -0.52 -26.81 6.23 25.60 0.16 -26.65 16 6 H 0.08 3.98 3.77 -2.91 -0.01 3.97 16 7 C 0.01 0.35 5.46 84.66 0.46 0.81 16 8 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 9 Si 0.93 43.57 29.54 68.60 2.03 45.60 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 13 N -0.55 -18.45 4.45 -877.58 -3.91 -22.36 16 14 C 0.07 2.54 5.00 86.60 0.43 2.97 16 15 C -0.16 -5.97 3.75 30.15 0.11 -5.86 16 16 C 0.51 17.88 6.84 88.09 0.60 18.48 16 17 O -0.60 -25.10 16.64 -3.04 -0.05 -25.15 16 18 N -0.61 -15.75 2.87 -845.32 -2.43 -18.18 16 19 C 0.08 1.61 10.44 127.77 1.33 2.95 16 20 C 0.07 1.42 5.22 86.26 0.45 1.87 16 21 C 0.04 1.04 5.11 86.58 0.44 1.48 16 22 H 0.08 1.59 5.87 -2.39 -0.01 1.58 16 23 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 24 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 26 H -0.01 -0.31 8.11 -2.39 -0.02 -0.33 16 27 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.05 1.86 7.88 -2.39 -0.02 1.84 16 29 H 0.11 5.15 4.63 -2.39 -0.01 5.14 16 30 H 0.08 3.17 7.87 -2.39 -0.02 3.16 16 31 H 0.10 3.50 4.59 -2.39 -0.01 3.49 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.34 7.39 -2.38 -0.02 1.32 16 34 H 0.10 1.28 7.86 -2.39 -0.02 1.26 16 35 H 0.13 1.54 7.78 -2.39 -0.02 1.52 16 36 H 0.07 1.70 5.15 -2.39 -0.01 1.69 16 37 H 0.07 1.70 8.05 -2.38 -0.02 1.68 16 38 H 0.11 2.15 6.22 -2.39 -0.01 2.14 16 Total: -1.00 -67.18 281.24 1.79 -65.40 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.06 Total: 11.63 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 4.81 Total: -2.23 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -6.05 Total: -95.25 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.05 Total: -25.15 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -67.18 1.79 -65.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595771703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.402 kcal (2) G-P(sol) polarization free energy of solvation -67.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds