Wall clock time and date at job start Mon Mar 30 2020 17:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47273 * 2 1 4 4 C 1.53004 * 109.47098 * 120.00139 * 2 1 3 5 5 C 1.50693 * 109.47146 * 294.99740 * 4 2 1 6 6 H 1.08007 * 119.99947 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00155 * 179.97438 * 5 4 2 8 8 N 1.31507 * 119.99904 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99976 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47053 * 60.00248 * 9 7 5 11 11 H 1.48501 * 109.46993 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47311 * 300.00091 * 9 7 5 13 13 C 1.53004 * 109.47104 * 239.99988 * 2 1 3 14 14 N 1.46902 * 109.46751 * 65.25285 * 13 2 1 15 15 C 1.47186 * 110.99989 * 72.59857 * 14 13 2 16 16 C 1.52982 * 108.73153 * 54.36801 * 15 14 13 17 17 N 1.46005 * 110.04529 * 50.29167 * 16 15 14 18 18 C 1.46493 * 118.53839 * 161.82052 * 17 16 15 19 19 C 1.33721 * 122.92525 * 341.83552 * 17 16 15 20 20 O 1.21284 * 118.62128 * 181.68756 * 19 17 16 21 21 C 1.46908 * 110.99460 * 195.48913 * 14 13 2 22 22 H 1.08998 * 109.47185 * 185.23914 * 1 2 3 23 23 H 1.09007 * 109.46922 * 305.24038 * 1 2 3 24 24 H 1.09003 * 109.46923 * 65.23170 * 1 2 3 25 25 H 1.09000 * 109.47080 * 174.99892 * 4 2 1 26 26 H 1.09000 * 109.47083 * 54.99893 * 4 2 1 27 27 H 0.97000 * 119.99965 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47061 * 185.25002 * 13 2 1 29 29 H 1.08992 * 109.47205 * 305.25191 * 13 2 1 30 30 H 1.09008 * 109.58864 * 174.13965 * 15 14 13 31 31 H 1.09003 * 109.59383 * 294.43646 * 15 14 13 32 32 H 1.08995 * 109.37234 * 170.46847 * 16 15 14 33 33 H 1.09006 * 109.37151 * 290.10956 * 16 15 14 34 34 H 1.09001 * 109.47536 * 89.99284 * 18 17 16 35 35 H 1.08996 * 109.47352 * 209.99814 * 18 17 16 36 36 H 1.09004 * 109.47178 * 329.99495 * 18 17 16 37 37 H 1.08994 * 109.38827 * 47.08530 * 21 14 13 38 38 H 1.09004 * 109.38087 * 166.77650 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9746 2.3757 7 6 1.9924 -0.4023 3.7283 8 7 2.6755 -1.5193 3.8512 9 14 1.4976 0.5621 5.2497 10 1 0.0176 0.6686 5.3087 11 1 1.9917 -0.1386 6.4623 12 1 2.0897 1.9224 5.1877 13 6 2.0400 -0.7213 -1.2493 14 7 1.6565 0.0406 -2.4453 15 6 2.4584 1.2688 -2.5678 16 6 3.9409 0.8934 -2.5307 17 7 4.2096 -0.1791 -3.4843 18 6 5.5938 -0.4124 -3.9034 19 6 3.2484 -0.9576 -3.9924 20 8 3.5633 -1.8461 -4.7556 21 6 1.7948 -0.7778 -3.6574 22 1 -0.3633 -1.0233 0.0938 23 1 -0.3633 0.5930 0.8394 24 1 -0.3633 0.4306 -0.9332 25 1 3.1263 -0.7995 1.2056 26 1 1.6053 -1.7198 1.2951 27 1 2.9227 -1.8423 4.7318 28 1 3.1259 -0.8034 -1.2035 29 1 1.6019 -1.7181 -1.2976 30 1 2.2296 1.7618 -3.5128 31 1 2.2280 1.9398 -1.7403 32 1 4.5413 1.7657 -2.7889 33 1 4.2043 0.5594 -1.5271 34 1 6.0613 -1.1305 -3.2297 35 1 5.6042 -0.8072 -4.9193 36 1 6.1459 0.5269 -3.8731 37 1 1.3389 -1.7534 -3.4892 38 1 1.2907 -0.2828 -4.4876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602471332.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:22 Heat of formation + Delta-G solvation = -33.451477 kcal Electronic energy + Delta-G solvation = -17965.643133 eV Core-core repulsion = 15228.971310 eV Total energy + Delta-G solvation = -2736.671823 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76409 -37.70870 -35.51498 -34.24520 -32.06899 -29.99351 -28.19695 -26.81394 -26.16701 -24.64450 -23.47174 -21.85525 -19.23871 -18.28519 -16.81106 -16.67849 -16.33482 -16.05989 -15.15536 -14.93760 -14.40792 -13.99090 -13.43845 -13.24580 -12.99654 -12.76798 -12.30317 -12.25025 -12.20309 -11.56628 -11.42585 -11.38766 -11.19868 -10.87399 -10.79957 -10.45985 -10.32688 -10.17368 -9.67757 -9.16772 -9.01066 -8.82028 -8.34798 -8.13584 -5.99468 -4.01090 2.57494 2.88535 3.32761 3.37729 3.39641 3.97975 4.42868 4.46441 4.86769 4.91200 5.01177 5.23954 5.24927 5.36416 5.43061 5.50939 5.62395 5.65359 5.71581 5.79741 5.95261 6.09972 6.25298 6.32343 6.45655 6.62867 6.88765 6.95412 7.09635 7.18823 7.27220 7.33923 7.65799 7.81419 8.00146 8.08230 8.43588 9.05215 9.62580 11.11984 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.005466 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.180875 B = 5121.178041 C = 5343.693035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.076 4.076 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.047 3.953 14 N -0.521 5.521 15 C 0.038 3.962 16 C 0.071 3.929 17 N -0.608 5.608 18 C 0.080 3.920 19 C 0.485 3.515 20 O -0.558 6.558 21 C 0.041 3.959 22 H 0.040 0.960 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.011 0.989 26 H 0.016 0.984 27 H 0.260 0.740 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 5.780 -13.774 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.080 4.080 14 N -0.244 5.244 15 C -0.091 4.091 16 C -0.053 4.053 17 N -0.342 5.342 18 C -0.063 4.063 19 C 0.272 3.728 20 O -0.435 6.435 21 C -0.090 4.090 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.029 0.971 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.251 5.326 -13.980 15.012 hybrid contribution 0.814 0.252 0.970 1.292 sum 2.065 5.577 -13.009 14.304 Atomic orbital electron populations 1.21597 0.95645 1.00826 1.00071 1.21173 0.96053 0.98927 0.93376 0.92564 1.19127 0.95824 0.95610 0.90455 1.21175 1.34772 1.08289 0.90923 0.92595 1.25020 0.95308 0.95070 0.99103 1.69953 1.38966 1.21201 1.23526 0.86693 0.78935 0.80061 0.82513 1.20246 1.21395 1.20321 1.22593 0.98622 0.97274 0.89516 1.62629 1.53967 1.05838 1.01991 1.22576 0.88613 0.93933 1.03942 1.22232 0.99470 0.90046 0.93531 1.47399 1.07855 1.34134 1.44785 1.21671 0.81721 1.01429 1.01483 1.21448 0.89910 0.81115 0.80299 1.90685 1.83440 1.32591 1.36832 1.22481 0.90481 1.01084 0.94942 0.94093 0.92904 0.93671 0.97069 0.96604 0.93015 0.94207 0.91073 0.90223 0.87737 0.90273 0.90216 0.92634 0.90557 0.91330 0.87132 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 8.86 37.16 0.33 -1.95 16 2 C -0.08 -1.46 2.36 -90.62 -0.21 -1.68 16 3 H 0.06 1.06 6.72 -51.93 -0.35 0.71 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -13.97 8.47 -34.44 -0.29 -14.26 16 6 H 0.06 1.48 7.06 -52.48 -0.37 1.10 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.05 0.77 3.83 -3.82 -0.01 0.75 16 14 N -0.52 -6.99 4.36 -236.10 -1.03 -8.02 16 15 C 0.04 0.43 5.79 -3.68 -0.02 0.40 16 16 C 0.07 0.80 5.67 -4.32 -0.02 0.78 16 17 N -0.61 -7.87 3.10 -182.48 -0.57 -8.44 16 18 C 0.08 0.89 10.29 59.84 0.62 1.51 16 19 C 0.49 7.16 7.11 -11.67 -0.08 7.08 16 20 O -0.56 -10.02 16.33 5.55 0.09 -9.93 16 21 C 0.04 0.52 5.87 -5.19 -0.03 0.49 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 1.03 7.11 -51.93 -0.37 0.66 16 24 H 0.04 0.73 7.62 -51.93 -0.40 0.33 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 28 H 0.04 0.68 5.51 -51.93 -0.29 0.40 16 29 H 0.07 1.21 7.77 -51.93 -0.40 0.81 16 30 H 0.08 0.76 8.08 -51.92 -0.42 0.34 16 31 H 0.10 1.18 6.87 -51.93 -0.36 0.82 16 32 H 0.08 0.70 7.98 -51.93 -0.41 0.28 16 33 H 0.08 1.04 6.60 -51.93 -0.34 0.70 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.91 7.26 -51.93 -0.38 0.54 16 36 H 0.07 0.58 7.92 -51.93 -0.41 0.17 16 37 H 0.11 1.41 7.79 -51.93 -0.40 1.01 16 38 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -31.64 299.43 -7.38 -39.03 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.15 Total: -2.68 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 0.04 Total: -4.84 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: -0.86 Total: -42.40 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.64 -7.38 -39.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602471332.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.574 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds