Wall clock time and date at job start Mon Mar 30 2020 17:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47273 * 2 1 4 4 C 1.53004 * 109.47098 * 120.00139 * 2 1 3 5 5 C 1.50693 * 109.47146 * 294.99740 * 4 2 1 6 6 H 1.08007 * 119.99947 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00155 * 179.97438 * 5 4 2 8 8 N 1.31507 * 119.99904 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99976 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47053 * 60.00248 * 9 7 5 11 11 H 1.48501 * 109.46993 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47311 * 300.00091 * 9 7 5 13 13 C 1.53004 * 109.47104 * 239.99988 * 2 1 3 14 14 N 1.46902 * 109.46751 * 65.25285 * 13 2 1 15 15 C 1.47186 * 110.99989 * 72.59857 * 14 13 2 16 16 C 1.52982 * 108.73153 * 54.36801 * 15 14 13 17 17 N 1.46005 * 110.04529 * 50.29167 * 16 15 14 18 18 C 1.46493 * 118.53839 * 161.82052 * 17 16 15 19 19 C 1.33721 * 122.92525 * 341.83552 * 17 16 15 20 20 O 1.21284 * 118.62128 * 181.68756 * 19 17 16 21 21 C 1.46908 * 110.99460 * 195.48913 * 14 13 2 22 22 H 1.08998 * 109.47185 * 185.23914 * 1 2 3 23 23 H 1.09007 * 109.46922 * 305.24038 * 1 2 3 24 24 H 1.09003 * 109.46923 * 65.23170 * 1 2 3 25 25 H 1.09000 * 109.47080 * 174.99892 * 4 2 1 26 26 H 1.09000 * 109.47083 * 54.99893 * 4 2 1 27 27 H 0.97000 * 119.99965 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47061 * 185.25002 * 13 2 1 29 29 H 1.08992 * 109.47205 * 305.25191 * 13 2 1 30 30 H 1.09008 * 109.58864 * 174.13965 * 15 14 13 31 31 H 1.09003 * 109.59383 * 294.43646 * 15 14 13 32 32 H 1.08995 * 109.37234 * 170.46847 * 16 15 14 33 33 H 1.09006 * 109.37151 * 290.10956 * 16 15 14 34 34 H 1.09001 * 109.47536 * 89.99284 * 18 17 16 35 35 H 1.08996 * 109.47352 * 209.99814 * 18 17 16 36 36 H 1.09004 * 109.47178 * 329.99495 * 18 17 16 37 37 H 1.08994 * 109.38827 * 47.08530 * 21 14 13 38 38 H 1.09004 * 109.38087 * 166.77650 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9746 2.3757 7 6 1.9924 -0.4023 3.7283 8 7 2.6755 -1.5193 3.8512 9 14 1.4976 0.5621 5.2497 10 1 0.0176 0.6686 5.3087 11 1 1.9917 -0.1386 6.4623 12 1 2.0897 1.9224 5.1877 13 6 2.0400 -0.7213 -1.2493 14 7 1.6565 0.0406 -2.4453 15 6 2.4584 1.2688 -2.5678 16 6 3.9409 0.8934 -2.5307 17 7 4.2096 -0.1791 -3.4843 18 6 5.5938 -0.4124 -3.9034 19 6 3.2484 -0.9576 -3.9924 20 8 3.5633 -1.8461 -4.7556 21 6 1.7948 -0.7778 -3.6574 22 1 -0.3633 -1.0233 0.0938 23 1 -0.3633 0.5930 0.8394 24 1 -0.3633 0.4306 -0.9332 25 1 3.1263 -0.7995 1.2056 26 1 1.6053 -1.7198 1.2951 27 1 2.9227 -1.8423 4.7318 28 1 3.1259 -0.8034 -1.2035 29 1 1.6019 -1.7181 -1.2976 30 1 2.2296 1.7618 -3.5128 31 1 2.2280 1.9398 -1.7403 32 1 4.5413 1.7657 -2.7889 33 1 4.2043 0.5594 -1.5271 34 1 6.0613 -1.1305 -3.2297 35 1 5.6042 -0.8072 -4.9193 36 1 6.1459 0.5269 -3.8731 37 1 1.3389 -1.7534 -3.4892 38 1 1.2907 -0.2828 -4.4876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602471332.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:14 Heat of formation + Delta-G solvation = -55.051227 kcal Electronic energy + Delta-G solvation = -17966.579769 eV Core-core repulsion = 15228.971310 eV Total energy + Delta-G solvation = -2737.608458 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 7.01 seconds Orbital eigenvalues (eV) -41.85265 -38.95600 -36.85209 -35.69764 -34.00526 -30.97628 -29.60482 -28.45355 -27.42203 -25.75852 -25.08565 -23.23016 -20.73703 -19.46602 -18.38384 -17.86883 -17.72686 -17.16893 -16.59123 -16.27650 -15.94284 -15.35899 -14.77658 -14.45214 -14.30870 -13.99597 -13.85258 -13.42709 -13.28069 -13.17735 -12.89726 -12.72251 -12.57065 -12.50796 -12.20366 -12.14706 -12.00429 -11.54659 -11.32174 -11.02108 -10.89690 -10.50430 -9.86243 -9.27122 -8.14998 -6.24132 1.42755 1.45202 1.45218 1.52695 1.90183 2.44091 2.89324 3.19009 3.44029 3.91742 3.92880 4.01935 4.26710 4.31613 4.36158 4.48409 4.54242 4.56472 4.66349 4.70714 4.81571 4.88446 4.91884 5.00246 5.10985 5.29071 5.32203 5.52192 5.55713 5.57298 5.78782 5.89130 5.91790 5.98377 6.29714 6.32725 6.92692 6.98534 7.44631 8.96945 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.005466 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.180875 B = 5121.178041 C = 5343.693035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.064 4.064 3 H 0.065 0.935 4 C 0.032 3.968 5 C -0.525 4.525 6 H 0.065 0.935 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.060 3.940 14 N -0.517 5.517 15 C 0.036 3.964 16 C 0.072 3.928 17 N -0.608 5.608 18 C 0.077 3.923 19 C 0.477 3.523 20 O -0.598 6.598 21 C 0.046 3.954 22 H 0.029 0.971 23 H 0.039 0.961 24 H 0.073 0.927 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.261 0.739 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 8.174 -14.383 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.083 4.083 3 H 0.084 0.916 4 C -0.005 4.005 5 C -0.563 4.563 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.190 1.190 13 C -0.067 4.067 14 N -0.240 5.240 15 C -0.092 4.092 16 C -0.052 4.052 17 N -0.341 5.341 18 C -0.066 4.066 19 C 0.266 3.734 20 O -0.479 6.479 21 C -0.085 4.085 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.586 7.760 -14.588 16.534 hybrid contribution 1.066 -0.494 1.139 1.636 sum 1.652 7.266 -13.449 15.375 Atomic orbital electron populations 1.21512 0.94647 1.00141 1.00970 1.20943 0.96658 0.98738 0.91970 0.91621 1.19024 0.93937 0.94537 0.93047 1.21614 1.34238 1.08578 0.91849 0.91688 1.25956 0.95317 0.96041 1.02716 1.70103 1.40490 1.23096 1.24247 0.85578 0.78935 0.78862 0.78156 1.19258 1.21448 1.18966 1.22255 0.97647 0.96802 0.90029 1.62571 1.54311 1.06126 1.00964 1.22735 0.88060 0.92791 1.05611 1.22319 1.00281 0.90495 0.92080 1.47555 1.08247 1.33963 1.44292 1.21783 0.81250 1.02979 1.00571 1.21855 0.91008 0.80700 0.79881 1.90666 1.84121 1.34287 1.38863 1.22536 0.89416 1.01295 0.95208 0.95182 0.94229 0.90781 0.99813 0.99776 0.93078 0.95340 0.92226 0.87431 0.87358 0.86901 0.92353 0.93514 0.91532 0.88031 0.87518 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 8.86 71.98 0.64 -3.46 16 2 C -0.06 -2.43 2.36 -10.79 -0.03 -2.45 16 3 H 0.07 2.37 6.72 -2.39 -0.02 2.35 16 4 C 0.03 1.64 4.45 29.85 0.13 1.77 16 5 C -0.52 -28.72 8.47 25.60 0.22 -28.50 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 8 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 9 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 13 C 0.06 1.96 3.83 86.30 0.33 2.29 16 14 N -0.52 -12.69 4.36 -900.88 -3.93 -16.62 16 15 C 0.04 0.69 5.79 86.24 0.50 1.19 16 16 C 0.07 1.44 5.67 86.47 0.49 1.93 16 17 N -0.61 -14.81 3.10 -850.23 -2.64 -17.45 16 18 C 0.08 1.62 10.29 127.77 1.32 2.94 16 19 C 0.48 13.60 7.11 87.68 0.62 14.22 16 20 O -0.60 -21.47 16.33 -3.04 -0.05 -21.52 16 21 C 0.05 1.08 5.87 85.42 0.50 1.59 16 22 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.04 1.49 7.11 -2.38 -0.02 1.47 16 24 H 0.07 2.20 7.62 -2.39 -0.02 2.18 16 25 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 26 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 27 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.03 0.99 5.51 -2.39 -0.01 0.98 16 29 H 0.06 2.06 7.77 -2.39 -0.02 2.04 16 30 H 0.11 1.55 8.08 -2.38 -0.02 1.53 16 31 H 0.11 2.06 6.87 -2.39 -0.02 2.04 16 32 H 0.11 1.55 7.98 -2.39 -0.02 1.53 16 33 H 0.06 1.46 6.60 -2.38 -0.02 1.44 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.56 7.26 -2.39 -0.02 1.54 16 36 H 0.10 1.45 7.92 -2.39 -0.02 1.43 16 37 H 0.11 2.61 7.79 -2.39 -0.02 2.59 16 38 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -69.48 299.43 1.90 -67.58 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.02 Total: 7.41 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 5.18 Total: -8.21 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -6.29 Total: -90.88 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -69.48 1.90 -67.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602471332.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.534 kcal (2) G-P(sol) polarization free energy of solvation -69.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.01 seconds