Wall clock time and date at job start Mon Mar 30 2020 17:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99853 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00109 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47379 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47607 * 119.99679 * 9 7 5 12 12 H 1.48498 * 109.46831 * 239.99884 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46904 * 109.47486 * 295.00613 * 13 2 1 15 15 C 1.47186 * 111.00354 * 169.99778 * 14 13 2 16 16 C 1.52984 * 108.72882 * 54.36153 * 15 14 13 17 17 N 1.46014 * 110.04030 * 50.29673 * 16 15 14 18 18 C 1.46502 * 118.53349 * 161.81434 * 17 16 15 19 19 C 1.33711 * 122.92578 * 341.83540 * 17 16 15 20 20 O 1.21283 * 118.62030 * 181.69038 * 19 17 16 21 21 C 1.46906 * 110.99444 * 292.88733 * 14 13 2 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 26 26 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 27 27 H 0.97004 * 120.00063 * 180.02562 * 8 7 5 28 28 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 29 29 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 30 30 H 1.08999 * 109.59540 * 174.13892 * 15 14 13 31 31 H 1.09001 * 109.59244 * 294.43818 * 15 14 13 32 32 H 1.09007 * 109.37257 * 170.46290 * 16 15 14 33 33 H 1.08993 * 109.37646 * 290.11653 * 16 15 14 34 34 H 1.09000 * 109.47183 * 90.00101 * 18 17 16 35 35 H 1.09002 * 109.46733 * 209.99785 * 18 17 16 36 36 H 1.08998 * 109.47207 * 329.99414 * 18 17 16 37 37 H 1.08997 * 109.38623 * 47.08537 * 21 14 13 38 38 H 1.09004 * 109.38402 * 166.77083 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9925 -0.4023 -3.7283 8 7 2.6757 -1.5193 -3.8511 9 14 1.4989 0.5628 -5.2496 10 1 0.7424 1.7743 -4.8435 11 1 2.7171 0.9667 -5.9965 12 1 0.6443 -0.2858 -6.1183 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 1.9129 -0.7372 3.6696 16 6 3.3793 -1.1732 3.6710 17 7 4.2428 -0.0255 3.4080 18 6 5.6621 -0.1229 3.7577 19 6 3.7957 1.1106 2.8627 20 8 4.5879 2.0039 2.6498 21 6 2.3531 1.3268 2.5025 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 3.1263 -0.7994 -1.2055 26 1 1.6054 -1.7198 -1.2951 27 1 2.9230 -1.8422 -4.7317 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2057 30 1 1.7150 -0.1171 4.5439 31 1 1.2680 -1.6157 3.6910 32 1 3.6292 -1.5984 4.6431 33 1 3.5334 -1.9262 2.8983 34 1 6.2196 -0.5163 2.9076 35 1 6.0416 0.8660 4.0148 36 1 5.7811 -0.7908 4.6108 37 1 2.2923 1.8149 1.5298 38 1 1.8837 1.9615 3.2541 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602471333.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:26 Heat of formation + Delta-G solvation = -57.073061 kcal Electronic energy + Delta-G solvation = -18028.138625 eV Core-core repulsion = 15290.442493 eV Total energy + Delta-G solvation = -2737.696132 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 4.17 seconds Orbital eigenvalues (eV) -41.85983 -38.88001 -37.03975 -35.64440 -34.01103 -30.93703 -29.61781 -28.53441 -27.41716 -25.89574 -24.94754 -23.16028 -21.04268 -19.31393 -18.42907 -17.80788 -17.74259 -17.15528 -16.66983 -16.13801 -15.85043 -15.61232 -14.81246 -14.46146 -14.29920 -14.04530 -13.86606 -13.55889 -13.28787 -13.10174 -12.90317 -12.76991 -12.56969 -12.51832 -12.21048 -12.14227 -11.99227 -11.59101 -11.32978 -11.06323 -10.91856 -10.54761 -9.85002 -9.29324 -8.19014 -6.27647 1.38581 1.39400 1.45349 1.52315 1.91003 2.41028 2.89815 3.14759 3.46022 3.91080 3.93507 4.02870 4.26443 4.28803 4.36663 4.48683 4.53943 4.55517 4.66113 4.69203 4.81963 4.88127 4.90424 5.00231 5.04795 5.28292 5.31754 5.47681 5.53505 5.54066 5.76270 5.87141 5.88201 6.00031 6.29202 6.30691 6.88378 6.99466 7.40689 8.93303 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030928 B = 0.005837 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.118177 B = 4796.085317 C = 5021.427922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.076 4.076 3 H 0.044 0.956 4 C 0.034 3.966 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.068 3.932 14 N -0.516 5.516 15 C 0.036 3.964 16 C 0.071 3.929 17 N -0.610 5.610 18 C 0.077 3.923 19 C 0.478 3.522 20 O -0.601 6.601 21 C 0.041 3.959 22 H 0.043 0.957 23 H 0.034 0.966 24 H 0.071 0.929 25 H -0.024 1.024 26 H -0.003 1.003 27 H 0.262 0.738 28 H 0.087 0.913 29 H 0.014 0.986 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 -0.727 18.919 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 H 0.063 0.937 4 C -0.003 4.003 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.202 1.202 13 C -0.060 4.060 14 N -0.239 5.239 15 C -0.092 4.092 16 C -0.052 4.052 17 N -0.343 5.343 18 C -0.066 4.066 19 C 0.266 3.734 20 O -0.482 6.482 21 C -0.090 4.090 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.090 0.910 25 H -0.005 1.005 26 H 0.015 0.985 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.033 0.967 30 H 0.122 0.878 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.685 -0.311 18.673 18.751 hybrid contribution 1.272 0.062 -1.329 1.841 sum -0.412 -0.249 17.344 17.351 Atomic orbital electron populations 1.21477 0.93875 1.00867 1.00679 1.21065 0.97312 0.98006 0.93122 0.93733 1.18993 0.93544 0.94990 0.92811 1.21670 1.34307 1.08486 0.92124 0.92220 1.25941 0.95273 0.96110 1.02648 1.70100 1.40358 1.22979 1.24202 0.85473 0.78035 0.78981 0.79056 1.18601 1.20818 1.20169 1.22149 0.96710 0.97781 0.89362 1.62588 1.55105 1.03409 1.02804 1.22815 0.93164 1.00620 0.92553 1.22430 0.91774 0.87260 1.03746 1.47567 1.11131 1.14749 1.60818 1.21782 0.80391 1.03135 1.01245 1.21793 0.93267 0.81852 0.76468 1.90668 1.58093 1.43764 1.55673 1.22518 0.86394 0.94891 1.05200 0.93816 0.94675 0.90988 1.00541 0.98504 0.92955 0.89501 0.96730 0.87770 0.86015 0.86532 0.91909 0.93731 0.92009 0.87432 0.88534 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.06 8.89 71.98 0.64 -3.42 16 2 C -0.08 -3.10 2.29 -10.80 -0.02 -3.12 16 3 H 0.04 1.91 6.18 -2.39 -0.01 1.90 16 4 C 0.03 1.81 4.45 29.85 0.13 1.95 16 5 C -0.53 -30.37 8.41 25.60 0.22 -30.16 16 6 H 0.06 3.33 7.06 -2.92 -0.02 3.31 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.94 -57.92 13.29 21.45 0.28 -57.63 16 9 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 10 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.07 2.18 3.41 86.30 0.29 2.47 16 14 N -0.52 -12.70 4.48 -900.88 -4.04 -16.74 16 15 C 0.04 0.57 6.03 86.24 0.52 1.09 16 16 C 0.07 1.20 5.69 86.47 0.49 1.70 16 17 N -0.61 -15.10 3.04 -850.20 -2.58 -17.68 16 18 C 0.08 1.66 10.30 127.77 1.32 2.98 16 19 C 0.48 15.06 6.81 87.68 0.60 15.66 16 20 O -0.60 -24.17 16.33 -3.04 -0.05 -24.22 16 21 C 0.04 1.11 5.76 85.42 0.49 1.61 16 22 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.03 1.40 6.95 -2.39 -0.02 1.38 16 24 H 0.07 2.20 7.75 -2.38 -0.02 2.18 16 25 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 26 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.09 2.60 8.08 -2.38 -0.02 2.58 16 29 H 0.01 0.52 6.23 -2.39 -0.01 0.51 16 30 H 0.10 1.29 8.08 -2.39 -0.02 1.27 16 31 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.12 1.14 7.98 -2.38 -0.02 1.12 16 33 H 0.06 1.22 7.09 -2.39 -0.02 1.20 16 34 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.54 7.26 -2.39 -0.02 1.52 16 36 H 0.11 1.42 7.92 -2.39 -0.02 1.40 16 37 H 0.10 3.13 5.98 -2.39 -0.01 3.11 16 38 H 0.14 2.89 8.14 -2.38 -0.02 2.87 16 Total: -1.00 -73.94 299.21 1.80 -72.14 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.02 Total: 5.68 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 5.14 Total: -8.94 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -6.33 Total: -92.05 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -73.94 1.80 -72.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602471333.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.068 kcal (2) G-P(sol) polarization free energy of solvation -73.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.17 seconds