Wall clock time and date at job start Mon Mar 30 2020 17:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46835 * 2 1 4 4 C 1.52992 * 109.47463 * 120.00727 * 2 1 3 5 5 C 1.50700 * 109.47219 * 294.99532 * 4 2 1 6 6 H 1.07999 * 119.99639 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00065 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00101 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99973 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47061 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47281 * 120.00594 * 9 7 5 12 12 H 1.48502 * 109.46808 * 240.00397 * 9 7 5 13 13 C 1.53001 * 109.46490 * 240.00773 * 2 1 3 14 14 N 1.46902 * 109.47308 * 64.99991 * 13 2 1 15 15 C 1.46905 * 110.99789 * 179.97438 * 14 13 2 16 16 H 1.08996 * 110.85559 * 328.78738 * 15 14 13 17 17 C 1.54784 * 110.83650 * 92.78426 * 15 14 13 18 18 C 1.51278 * 104.12065 * 143.12067 * 17 15 14 19 19 O 1.21283 * 124.94441 * 163.67549 * 18 17 15 20 20 N 1.34420 * 110.11582 * 343.40725 * 18 17 15 21 21 C 1.46502 * 124.35242 * 179.80107 * 20 18 17 22 22 C 1.46764 * 111.30051 * 359.82146 * 20 18 17 23 23 H 1.08997 * 109.47347 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46461 * 299.99435 * 1 2 3 25 25 H 1.09003 * 109.47616 * 59.99017 * 1 2 3 26 26 H 1.08995 * 109.47345 * 54.99912 * 4 2 1 27 27 H 1.08999 * 109.47260 * 174.99952 * 4 2 1 28 28 H 0.96998 * 119.99844 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47111 * 304.99357 * 13 2 1 30 30 H 1.09006 * 109.46846 * 184.99623 * 13 2 1 31 31 H 1.00897 * 111.00010 * 303.94854 * 14 13 2 32 32 H 1.08996 * 110.61291 * 24.41818 * 17 15 14 33 33 H 1.09001 * 110.42713 * 261.72768 * 17 15 14 34 34 H 1.09004 * 109.46895 * 0.02659 * 21 20 18 35 35 H 1.09000 * 109.46869 * 120.02255 * 21 20 18 36 36 H 1.08990 * 109.47249 * 240.02637 * 21 20 18 37 37 H 1.09003 * 110.24343 * 136.01592 * 22 20 18 38 38 H 1.09001 * 110.24815 * 258.01552 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6415 0.0568 2.4765 6 1 1.0802 0.9739 2.3757 7 6 1.9926 -0.4026 3.7281 8 7 2.6758 -1.5197 3.8508 9 14 1.4980 0.5616 5.2497 10 1 0.7417 1.7734 4.8436 11 1 0.6438 -0.2878 6.1181 12 1 2.7159 0.9662 5.9969 13 6 2.0398 -0.7211 -1.2494 14 7 1.6512 0.0377 -2.4457 15 6 2.1255 -0.6262 -3.6673 16 1 3.0565 -1.1616 -3.4815 17 6 1.0402 -1.5714 -4.2371 18 6 1.1783 -1.4302 -5.7369 19 8 0.7144 -2.1985 -6.5527 20 7 1.8851 -0.3261 -6.0342 21 6 2.2080 0.1070 -7.3960 22 6 2.2922 0.3895 -4.8193 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 1.6055 -1.7199 1.2949 27 1 3.1264 -0.7996 1.2054 28 1 2.9231 -1.8427 4.7314 29 1 1.6053 -1.7197 -1.2953 30 1 3.1262 -0.7993 -1.2058 31 1 0.6527 0.1796 -2.4753 32 1 0.0483 -1.2557 -3.9139 33 1 1.2328 -2.5998 -3.9314 34 1 1.7880 -0.6002 -8.1114 35 1 1.7857 1.0962 -7.5724 36 1 3.2903 0.1470 -7.5175 37 1 3.3330 0.7037 -4.8975 38 1 1.6478 1.2535 -4.6566 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602527299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:56:08 Heat of formation + Delta-G solvation = -47.319163 kcal Electronic energy + Delta-G solvation = -17081.405086 eV Core-core repulsion = 14344.131915 eV Total energy + Delta-G solvation = -2737.273171 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 4.57 seconds Orbital eigenvalues (eV) -40.56705 -37.45827 -36.08448 -34.12542 -32.30666 -30.51410 -27.68270 -26.97224 -26.39467 -24.97360 -22.50672 -21.38036 -19.74512 -19.00241 -17.06362 -16.65135 -16.32872 -15.76154 -15.02025 -14.64376 -14.27699 -13.97586 -13.81144 -13.74749 -12.95098 -12.70300 -12.54977 -12.51724 -12.30097 -12.09678 -11.64990 -11.39791 -11.33447 -10.90187 -10.80131 -10.36629 -10.26389 -10.10870 -9.76311 -9.20735 -8.99580 -8.92972 -8.35867 -8.31929 -6.00043 -4.01324 2.41909 2.81375 3.30733 3.38636 3.42247 3.96553 4.32000 4.43168 4.48764 4.81539 4.87632 5.08561 5.11063 5.36044 5.37400 5.41485 5.45221 5.57043 5.67662 5.71952 5.74307 5.98790 6.18956 6.27780 6.38370 6.48828 6.82651 6.89106 7.05829 7.11100 7.20628 7.45714 7.66712 7.81712 7.98676 7.99940 8.43331 9.05303 9.62482 11.11467 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.061203 B = 0.003777 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.387347 B = 7411.118907 C = 7483.550535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.066 0.934 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.677 5.677 15 C 0.079 3.921 16 H 0.100 0.900 17 C -0.186 4.186 18 C 0.520 3.480 19 O -0.540 6.540 20 N -0.625 5.625 21 C 0.093 3.907 22 C 0.110 3.890 23 H 0.042 0.958 24 H 0.063 0.937 25 H 0.031 0.969 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.259 0.741 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.344 0.656 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.732 3.726 -17.433 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.308 5.308 15 C -0.033 4.033 16 H 0.118 0.882 17 C -0.228 4.228 18 C 0.308 3.692 19 O -0.417 6.417 20 N -0.360 5.360 21 C -0.049 4.049 22 C -0.013 4.013 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.341 3.678 -17.762 18.142 hybrid contribution -0.773 -0.252 0.896 1.210 sum -1.115 3.426 -16.866 17.246 Atomic orbital electron populations 1.21758 0.96634 1.00536 1.00339 1.21236 0.94902 1.00160 0.94070 0.91513 1.19114 0.96174 0.95404 0.90334 1.21266 1.34620 1.08290 0.90958 0.92492 1.25022 0.95325 0.95083 0.99135 1.69972 1.39102 1.21232 1.23315 0.86577 0.78268 0.80116 0.83287 1.19742 1.21124 1.21085 1.22225 1.00549 0.94686 0.89041 1.60508 1.20027 1.49563 1.00707 1.22538 0.97973 0.92390 0.90402 0.88202 1.23210 1.02228 1.03965 0.93426 1.20886 0.76931 0.80128 0.91276 1.90707 1.49945 1.45852 1.55172 1.48235 1.54738 1.25894 1.07139 1.21549 1.00799 1.00580 0.81968 1.22169 1.01426 0.95413 0.82340 0.93922 0.91770 0.95005 0.96697 0.96612 0.93130 0.95313 0.91120 0.83600 0.87634 0.87931 0.90087 0.92038 0.92022 0.89974 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.77 37.16 0.33 -2.02 16 2 C -0.08 -1.61 2.54 -90.62 -0.23 -1.84 16 3 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 4 C 0.03 0.67 4.45 -27.89 -0.12 0.55 16 5 C -0.51 -13.98 8.41 -34.44 -0.29 -14.26 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.06 0.97 5.01 -3.82 -0.02 0.95 16 14 N -0.68 -8.28 6.36 -104.91 -0.67 -8.94 16 15 C 0.08 0.81 3.50 -65.99 -0.23 0.58 16 16 H 0.10 1.03 7.83 -51.93 -0.41 0.63 16 17 C -0.19 -2.00 6.55 -26.66 -0.17 -2.18 16 18 C 0.52 6.65 8.02 -10.86 -0.09 6.57 16 19 O -0.54 -8.92 17.35 5.55 0.10 -8.82 16 20 N -0.63 -6.43 3.33 -180.29 -0.60 -7.03 16 21 C 0.09 0.74 11.14 59.85 0.67 1.41 16 22 C 0.11 0.99 7.08 -3.12 -0.02 0.97 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 25 H 0.03 0.45 6.68 -51.93 -0.35 0.10 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 31 H 0.34 3.99 6.33 -39.29 -0.25 3.75 16 32 H 0.11 1.07 7.57 -51.93 -0.39 0.67 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 0.73 7.53 -51.93 -0.39 0.34 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.70 8.07 -51.93 -0.42 0.29 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -31.43 309.81 -7.37 -38.79 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.30 Total: -1.36 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -0.28 Total: -7.82 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.53 Total: -41.77 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.10 Total: -8.82 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.43 -7.37 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602527299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.528 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.57 seconds