Wall clock time and date at job start Mon Mar 30 2020 17:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 N 1.46895 * 109.47270 * 295.00157 * 13 2 1 15 15 C 1.46901 * 111.00119 * 179.97438 * 14 13 2 16 16 H 1.08998 * 110.85791 * 322.66350 * 15 14 13 17 17 C 1.54632 * 110.97020 * 86.45289 * 15 14 13 18 18 C 1.51284 * 104.19611 * 142.91779 * 17 15 14 19 19 O 1.21271 * 124.94148 * 163.78101 * 18 17 15 20 20 N 1.34420 * 110.11469 * 343.74720 * 18 17 15 21 21 C 1.46497 * 124.35049 * 179.56855 * 20 18 17 22 22 C 1.46765 * 111.30337 * 359.59409 * 20 18 17 23 23 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 25 25 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 26 26 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 27 27 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 28 28 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.46945 * 55.00387 * 13 2 1 30 30 H 1.09002 * 109.47045 * 174.99748 * 13 2 1 31 31 H 1.00905 * 111.00458 * 56.04758 * 14 13 2 32 32 H 1.09000 * 110.48782 * 261.59626 * 17 15 14 33 33 H 1.08994 * 110.48293 * 24.23618 * 17 15 14 34 34 H 1.09006 * 109.46833 * 359.97438 * 21 20 18 35 35 H 1.08999 * 109.47138 * 119.97835 * 21 20 18 36 36 H 1.09000 * 109.47549 * 239.97663 * 21 20 18 37 37 H 1.08993 * 110.24580 * 258.01510 * 22 20 18 38 38 H 1.08998 * 110.24513 * 136.01167 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 1.6545 0.2833 -4.7988 9 14 2.9681 -1.9854 -3.9026 10 1 2.0289 -3.1290 -4.0260 11 1 3.8217 -1.9127 -5.1157 12 1 3.8252 -2.1758 -2.7049 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6272 3.6671 16 1 2.0515 -1.7106 3.5728 17 6 3.5712 -0.1977 4.0058 18 6 3.5900 -0.1163 5.5163 19 8 4.5926 -0.0851 6.1978 20 7 2.3336 -0.0827 5.9931 21 6 1.9910 -0.0129 7.4158 22 6 1.3492 -0.1256 4.9055 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6054 -1.7197 -1.2952 27 1 3.1263 -0.7993 -1.2057 28 1 1.9049 -0.0377 -5.6792 29 1 1.6054 -1.7198 1.2950 30 1 3.1263 -0.7995 1.2055 31 1 0.6528 0.1793 2.4753 32 1 4.2830 -0.9450 3.6551 33 1 3.7922 0.7758 3.5684 34 1 2.9052 0.0064 8.0091 35 1 1.4147 0.8924 7.6067 36 1 1.3982 -0.8855 7.6900 37 1 0.9475 0.8706 4.7208 38 1 0.5443 -0.8179 5.1523 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602527301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:56:24 Heat of formation + Delta-G solvation = -43.126377 kcal Electronic energy + Delta-G solvation = -17118.694919 eV Core-core repulsion = 14381.603561 eV Total energy + Delta-G solvation = -2737.091358 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.55982 -37.52065 -36.16133 -34.14075 -32.29516 -30.74952 -27.88531 -27.45638 -26.41864 -25.02417 -22.20967 -21.17574 -19.82216 -19.02919 -17.00921 -16.83774 -16.70458 -15.68936 -15.33544 -14.71056 -14.11286 -13.97770 -13.87611 -13.70873 -13.34197 -12.81831 -12.70034 -12.51088 -12.30126 -12.19884 -11.70645 -11.59600 -11.28077 -11.06400 -10.76374 -10.47491 -10.01687 -9.85995 -9.75145 -9.49939 -9.09013 -8.98727 -8.53423 -8.46418 -6.03471 -4.00722 2.44021 2.76991 3.30202 3.38386 3.41386 3.95332 4.17715 4.35511 4.45510 4.80011 4.92512 5.06094 5.11437 5.18543 5.30030 5.40827 5.41824 5.55320 5.56338 5.62226 5.83741 5.87979 6.06927 6.23559 6.29778 6.38899 6.68520 6.84370 6.90903 7.00429 7.08847 7.28131 7.35458 7.47340 7.80691 7.98796 8.55238 9.02022 9.59329 11.09928 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045489 B = 0.004200 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.382261 B = 6664.466073 C = 7022.070415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.073 0.927 4 C -0.009 4.009 5 C -0.514 4.514 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.061 3.939 14 N -0.676 5.676 15 C 0.073 3.927 16 H 0.065 0.935 17 C -0.146 4.146 18 C 0.520 3.480 19 O -0.538 6.538 20 N -0.625 5.625 21 C 0.093 3.907 22 C 0.103 3.897 23 H 0.041 0.959 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.009 0.991 27 H 0.015 0.985 28 H 0.262 0.738 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.345 0.655 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 -2.647 20.379 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.095 4.095 3 H 0.091 0.909 4 C -0.046 4.046 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.068 4.068 14 N -0.309 5.309 15 C -0.038 4.038 16 H 0.083 0.917 17 C -0.187 4.187 18 C 0.309 3.691 19 O -0.415 6.415 20 N -0.360 5.360 21 C -0.049 4.049 22 C -0.020 4.020 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.165 0.835 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.452 -2.203 20.598 20.766 hybrid contribution -0.254 -1.605 -0.246 1.644 sum -1.706 -3.808 20.352 20.775 Atomic orbital electron populations 1.21760 0.96175 1.00551 1.00899 1.21042 0.95248 1.00294 0.92906 0.90875 1.19601 0.95993 0.95683 0.93371 1.21125 1.35323 1.09646 0.89096 0.90814 1.25034 0.95638 0.96942 0.95973 1.69912 1.47180 1.39242 0.98055 0.86807 0.80638 0.84276 0.77706 1.20446 1.21465 1.19054 1.22248 1.00658 0.94498 0.89352 1.60628 1.19959 1.49811 1.00527 1.22387 0.94269 0.97164 0.89973 0.91694 1.22469 0.98134 1.05867 0.92237 1.21051 0.82591 0.74499 0.90989 1.90707 1.34892 1.50836 1.65019 1.48149 1.07300 1.73850 1.06710 1.21552 1.02078 1.01399 0.79879 1.22230 0.91493 1.02474 0.85837 0.94027 0.94694 0.91256 0.97233 0.96624 0.92805 0.95409 0.91153 0.83506 0.88265 0.86338 0.89952 0.92050 0.92154 0.89916 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.77 37.16 0.33 -1.96 16 2 C -0.08 -1.38 2.54 -90.62 -0.23 -1.61 16 3 H 0.07 1.43 8.14 -51.92 -0.42 1.00 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.29 16 5 C -0.51 -14.15 8.96 -34.44 -0.31 -14.46 16 6 H 0.07 2.18 7.30 -52.49 -0.38 1.80 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 9 Si 0.88 21.47 27.47 -169.99 -4.67 16.81 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 13 C 0.06 0.88 5.01 -3.83 -0.02 0.86 16 14 N -0.68 -7.87 6.29 -105.01 -0.66 -8.53 16 15 C 0.07 0.72 3.43 -66.08 -0.23 0.50 16 16 H 0.07 0.63 7.92 -51.93 -0.41 0.22 16 17 C -0.15 -1.64 6.54 -26.74 -0.17 -1.82 16 18 C 0.52 6.68 8.02 -10.86 -0.09 6.59 16 19 O -0.54 -8.88 17.35 5.57 0.10 -8.79 16 20 N -0.62 -6.27 3.33 -180.29 -0.60 -6.87 16 21 C 0.09 0.71 11.14 59.85 0.67 1.38 16 22 C 0.10 0.84 6.85 -3.12 -0.02 0.82 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.03 0.47 6.68 -51.93 -0.35 0.12 16 25 H 0.07 1.35 6.95 -51.93 -0.36 0.99 16 26 H 0.01 0.21 7.58 -51.93 -0.39 -0.18 16 27 H 0.02 0.36 7.19 -51.93 -0.37 -0.01 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.03 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.34 3.61 6.77 -39.29 -0.27 3.34 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.12 1.40 8.08 -51.93 -0.42 0.98 16 34 H 0.08 0.72 7.53 -51.93 -0.39 0.33 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 306.87 15.07 4.62 4.62 Total: -1.00 -32.15 306.87 -7.02 -39.17 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.31 Total: -1.35 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.27 Total: -8.23 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.49 Total: -42.23 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.10 Total: -8.79 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.15 -7.02 -39.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602527301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.955 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds