Wall clock time and date at job start Mon Mar 30 2020 17:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 N 1.46895 * 109.47270 * 295.00157 * 13 2 1 15 15 C 1.46901 * 111.00119 * 179.97438 * 14 13 2 16 16 H 1.08998 * 110.85791 * 322.66350 * 15 14 13 17 17 C 1.54632 * 110.97020 * 86.45289 * 15 14 13 18 18 C 1.51284 * 104.19611 * 142.91779 * 17 15 14 19 19 O 1.21271 * 124.94148 * 163.78101 * 18 17 15 20 20 N 1.34420 * 110.11469 * 343.74720 * 18 17 15 21 21 C 1.46497 * 124.35049 * 179.56855 * 20 18 17 22 22 C 1.46765 * 111.30337 * 359.59409 * 20 18 17 23 23 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 25 25 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 26 26 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 27 27 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 28 28 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.46945 * 55.00387 * 13 2 1 30 30 H 1.09002 * 109.47045 * 174.99748 * 13 2 1 31 31 H 1.00905 * 111.00458 * 56.04758 * 14 13 2 32 32 H 1.09000 * 110.48782 * 261.59626 * 17 15 14 33 33 H 1.08994 * 110.48293 * 24.23618 * 17 15 14 34 34 H 1.09006 * 109.46833 * 359.97438 * 21 20 18 35 35 H 1.08999 * 109.47138 * 119.97835 * 21 20 18 36 36 H 1.09000 * 109.47549 * 239.97663 * 21 20 18 37 37 H 1.08993 * 110.24580 * 258.01510 * 22 20 18 38 38 H 1.08998 * 110.24513 * 136.01167 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 1.6545 0.2833 -4.7988 9 14 2.9681 -1.9854 -3.9026 10 1 2.0289 -3.1290 -4.0260 11 1 3.8217 -1.9127 -5.1157 12 1 3.8252 -2.1758 -2.7049 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6272 3.6671 16 1 2.0515 -1.7106 3.5728 17 6 3.5712 -0.1977 4.0058 18 6 3.5900 -0.1163 5.5163 19 8 4.5926 -0.0851 6.1978 20 7 2.3336 -0.0827 5.9931 21 6 1.9910 -0.0129 7.4158 22 6 1.3492 -0.1256 4.9055 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6054 -1.7197 -1.2952 27 1 3.1263 -0.7993 -1.2057 28 1 1.9049 -0.0377 -5.6792 29 1 1.6054 -1.7198 1.2950 30 1 3.1263 -0.7995 1.2055 31 1 0.6528 0.1793 2.4753 32 1 4.2830 -0.9450 3.6551 33 1 3.7922 0.7758 3.5684 34 1 2.9052 0.0064 8.0091 35 1 1.4147 0.8924 7.6067 36 1 1.3982 -0.8855 7.6900 37 1 0.9475 0.8706 4.7208 38 1 0.5443 -0.8179 5.1523 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602527301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:56:24 Heat of formation + Delta-G solvation = -66.267703 kcal Electronic energy + Delta-G solvation = -17119.698402 eV Core-core repulsion = 14381.603561 eV Total energy + Delta-G solvation = -2738.094841 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43364 -38.64765 -37.33064 -35.43856 -34.10550 -31.86877 -29.35277 -28.53331 -27.30091 -26.25463 -23.87604 -22.04398 -20.83385 -20.41270 -18.90943 -17.80454 -17.60768 -16.65498 -16.51488 -16.13259 -15.48772 -15.27190 -14.99943 -14.68644 -14.52012 -14.22891 -13.77758 -13.61890 -13.38249 -13.28751 -13.17880 -12.77771 -12.57951 -12.41495 -12.17594 -11.97770 -11.69771 -11.41286 -11.14799 -11.04456 -10.94390 -10.71074 -9.76065 -9.39234 -8.23656 -6.25579 1.37524 1.40189 1.48570 1.51267 2.03723 2.39851 3.02539 3.12102 3.40513 3.56666 4.05642 4.14851 4.27083 4.32673 4.40640 4.46938 4.52039 4.59530 4.71882 4.77770 4.83626 4.85702 4.89128 5.00688 5.07449 5.12026 5.35849 5.44390 5.51405 5.60879 5.75602 5.78002 6.00384 6.09682 6.37657 6.51667 6.82903 7.07905 7.38095 8.93148 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045489 B = 0.004200 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.382261 B = 6664.466073 C = 7022.070415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 H 0.053 0.947 4 C -0.008 4.008 5 C -0.517 4.517 6 H 0.035 0.965 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.246 1.246 13 C 0.075 3.925 14 N -0.678 5.678 15 C 0.079 3.921 16 H 0.077 0.923 17 C -0.146 4.146 18 C 0.512 3.488 19 O -0.586 6.586 20 N -0.620 5.620 21 C 0.087 3.913 22 C 0.107 3.893 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.030 0.970 26 H 0.018 0.982 27 H 0.015 0.985 28 H 0.263 0.737 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.355 0.645 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.241 -4.377 22.306 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.046 4.046 5 C -0.555 4.555 6 H 0.053 0.947 7 C -0.196 4.196 8 N -0.597 5.597 9 Si 0.771 3.229 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.170 1.170 13 C -0.054 4.054 14 N -0.312 5.312 15 C -0.032 4.032 16 H 0.095 0.905 17 C -0.187 4.187 18 C 0.300 3.700 19 O -0.467 6.467 20 N -0.354 5.354 21 C -0.054 4.054 22 C -0.016 4.016 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.177 0.823 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.245 -3.929 22.553 23.002 hybrid contribution -0.108 -0.957 -0.819 1.264 sum -2.353 -4.886 21.734 22.400 Atomic orbital electron populations 1.21679 0.95080 1.01148 1.00860 1.20893 0.96167 0.99060 0.93014 0.92879 1.19576 0.95962 0.95731 0.93339 1.21491 1.34037 1.08690 0.91278 0.94672 1.26010 0.97074 1.00937 0.95621 1.70076 1.49271 1.41622 0.98736 0.85704 0.79351 0.79637 0.78208 1.19234 1.21539 1.16967 1.21939 1.00291 0.94655 0.88563 1.60455 1.20804 1.49716 1.00214 1.22352 0.93354 0.97643 0.89807 0.90542 1.22443 0.99411 1.05493 0.91313 1.21310 0.82931 0.74230 0.91485 1.90675 1.36614 1.53352 1.66045 1.48310 1.06758 1.72153 1.08141 1.21746 1.01853 1.03495 0.78305 1.22352 0.91223 1.03779 0.84233 0.93028 0.91019 0.95040 0.96362 0.96704 0.92778 0.94068 0.91630 0.82333 0.88332 0.87166 0.91654 0.90134 0.89780 0.89039 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 8.77 71.98 0.63 -3.53 16 2 C -0.07 -2.54 2.54 -10.80 -0.03 -2.56 16 3 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 4 C -0.01 -0.36 3.52 29.85 0.10 -0.26 16 5 C -0.52 -29.05 8.96 25.60 0.23 -28.82 16 6 H 0.03 2.18 7.30 -2.91 -0.02 2.16 16 7 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 8 N -0.96 -60.00 13.96 21.45 0.30 -59.70 16 9 Si 0.95 43.96 27.47 68.60 1.88 45.84 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 13 C 0.07 1.94 5.01 86.30 0.43 2.37 16 14 N -0.68 -13.53 6.29 -486.13 -3.06 -16.59 16 15 C 0.08 1.30 3.43 45.98 0.16 1.46 16 16 H 0.08 1.16 7.92 -2.39 -0.02 1.14 16 17 C -0.15 -3.05 6.54 30.59 0.20 -2.85 16 18 C 0.51 12.58 8.02 87.90 0.71 13.29 16 19 O -0.59 -19.51 17.35 -3.00 -0.05 -19.56 16 20 N -0.62 -10.82 3.33 -842.91 -2.81 -13.63 16 21 C 0.09 1.11 11.14 127.77 1.42 2.53 16 22 C 0.11 1.31 6.85 86.83 0.59 1.91 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.07 1.73 6.68 -2.39 -0.02 1.72 16 25 H 0.03 1.22 6.95 -2.39 -0.02 1.20 16 26 H 0.02 0.78 7.58 -2.38 -0.02 0.76 16 27 H 0.01 0.66 7.19 -2.39 -0.02 0.64 16 28 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.04 0.98 8.09 -2.39 -0.02 0.96 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.36 5.95 6.77 -89.69 -0.61 5.34 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.11 2.49 8.08 -2.39 -0.02 2.47 16 34 H 0.06 1.08 7.53 -2.38 -0.02 1.06 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 1.04 8.07 -2.39 -0.02 1.02 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -72.24 306.87 1.55 -70.69 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.37 Total: 8.99 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 4.92 Total: -16.03 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -5.57 Total: -89.93 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.05 Total: -19.56 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Total: -72.24 1.55 -70.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602527301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.422 kcal (2) G-P(sol) polarization free energy of solvation -72.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds