Wall clock time and date at job start Mon Mar 30 2020 17:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 5 5 C 1.50708 * 109.47042 * 65.00504 * 4 2 1 6 6 H 1.08004 * 119.99423 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99854 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99536 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00426 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47157 * 90.00036 * 9 7 5 11 11 H 1.48501 * 109.47212 * 210.00249 * 9 7 5 12 12 H 1.48507 * 109.46913 * 330.00428 * 9 7 5 13 13 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 14 14 N 1.46901 * 109.46916 * 294.99594 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.47066 * 180.02562 * 15 14 13 17 17 O 1.21283 * 120.00271 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00196 * 180.02562 * 16 15 14 19 19 C 1.46500 * 120.00269 * 180.02562 * 18 16 15 20 20 C 1.53001 * 117.49922 * 223.74437 * 19 18 16 21 21 C 1.53005 * 117.49982 * 155.08840 * 19 18 16 22 22 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 24 24 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 25 25 H 1.09008 * 109.47139 * 185.00096 * 4 2 1 26 26 H 1.09001 * 109.47414 * 305.00040 * 4 2 1 27 27 H 0.97000 * 119.99758 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.46889 * 174.99975 * 13 2 1 29 29 H 1.08995 * 109.47384 * 54.99615 * 13 2 1 30 30 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 31 31 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 32 32 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 33 33 H 0.97009 * 119.99629 * 359.97438 * 18 16 15 34 34 H 1.08995 * 115.55193 * 9.41348 * 19 18 16 35 35 H 1.08997 * 117.49811 * 0.02562 * 20 19 18 36 36 H 1.08996 * 117.49657 * 145.01845 * 20 19 18 37 37 H 1.08995 * 117.49837 * 214.98346 * 21 19 18 38 38 H 1.08998 * 117.49817 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 1.6448 0.2771 -4.7993 9 14 2.9625 -1.9891 -3.9028 10 1 2.0232 -3.1335 -4.0188 11 1 3.8106 -1.9194 -5.1198 12 1 3.8249 -2.1758 -2.7083 13 6 2.0399 -0.7213 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1257 -0.6265 3.6672 16 6 1.7086 0.1787 4.8709 17 8 1.0779 1.2044 4.7255 18 7 2.0365 -0.2409 6.1089 19 6 1.6307 0.5415 7.2791 20 6 2.6683 0.7503 8.3838 21 6 1.4896 -0.1996 8.6102 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.1263 -0.7996 -1.2055 26 1 1.6053 -1.7199 -1.2950 27 1 1.8921 -0.0459 -5.6799 28 1 3.1262 -0.7995 1.2056 29 1 1.6052 -1.7198 1.2953 30 1 1.9882 0.9873 2.3966 31 1 1.6919 -1.6245 3.7301 32 1 3.2126 -0.7037 3.6401 33 1 2.5407 -1.0615 6.2252 34 1 0.9354 1.3572 7.0810 35 1 3.6531 0.3059 8.2398 36 1 2.6554 1.7032 8.9128 37 1 0.7016 0.1288 9.2879 38 1 1.6983 -1.2694 8.6152 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602662829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:57:18 Heat of formation + Delta-G solvation = -23.357302 kcal Electronic energy + Delta-G solvation = -16608.357993 eV Core-core repulsion = 13872.123887 eV Total energy + Delta-G solvation = -2736.234107 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.96386 -37.54766 -36.60527 -33.89052 -33.04133 -31.90946 -28.11418 -26.85542 -24.54132 -22.80603 -22.30957 -21.74364 -20.81051 -19.19414 -17.35742 -16.84967 -16.60348 -15.96896 -15.04492 -14.73831 -14.50388 -14.25109 -13.82505 -13.39064 -13.13202 -12.76372 -12.53781 -12.21085 -12.00669 -11.68231 -11.61331 -11.54287 -10.93100 -10.91620 -10.72705 -10.46349 -9.99017 -9.76422 -9.70949 -9.38740 -9.05512 -9.02782 -8.49136 -8.23730 -5.99052 -3.95862 2.44164 2.75147 3.32824 3.40014 3.43007 3.53515 4.36500 4.38964 4.48844 4.53563 4.58490 4.62674 5.16223 5.20342 5.21640 5.34309 5.40700 5.56305 5.58880 5.64908 5.73749 6.04186 6.20130 6.29995 6.43605 6.63831 6.85596 7.03080 7.12111 7.21620 7.28335 7.34404 7.48159 7.57153 7.85557 8.07032 8.60979 9.07364 9.63625 11.14500 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.062199 B = 0.003468 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.058215 B = 8071.809962 C = 8321.486340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.061 0.939 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.671 5.671 15 C 0.041 3.959 16 C 0.516 3.484 17 O -0.519 6.519 18 N -0.710 5.710 19 C 0.082 3.918 20 C -0.196 4.196 21 C -0.191 4.191 22 H 0.038 0.962 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.262 0.738 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.349 0.651 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.401 0.599 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -4.054 25.286 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.093 4.093 3 H 0.080 0.920 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.707 3.293 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.066 4.066 14 N -0.303 5.303 15 C -0.091 4.091 16 C 0.303 3.697 17 O -0.393 6.393 18 N -0.362 5.362 19 C -0.024 4.024 20 C -0.234 4.234 21 C -0.229 4.229 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.169 0.831 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.235 0.765 34 H 0.155 0.845 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.185 -3.574 24.967 25.316 hybrid contribution 1.803 -1.187 -0.125 2.162 sum 3.987 -4.761 24.842 25.606 Atomic orbital electron populations 1.21610 0.95141 1.00628 1.00934 1.21007 0.96526 0.99130 0.92607 0.92035 1.19618 0.95670 0.95897 0.93479 1.21147 1.35184 1.09603 0.89070 0.90766 1.25037 0.95715 0.96952 0.95961 1.69920 1.47265 1.39308 0.97987 0.86794 0.80611 0.84392 0.77532 1.20380 1.21536 1.19166 1.22237 0.97158 0.97792 0.89438 1.60232 1.64007 1.06178 0.99927 1.21798 0.98917 0.98823 0.89604 1.20799 0.78981 0.85972 0.83965 1.90720 1.38241 1.24535 1.85763 1.45422 1.58279 1.27378 1.05081 1.21578 1.01316 0.98422 0.81060 1.23437 0.95040 1.01735 1.03213 1.23384 1.01293 0.98662 0.99586 0.94255 0.93454 0.92198 0.96949 0.97019 0.92854 0.95606 0.91342 0.83140 0.88148 0.92543 0.76530 0.84460 0.88545 0.88011 0.87885 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.89 37.15 0.33 -2.17 16 2 C -0.07 -1.48 2.48 -90.62 -0.22 -1.70 16 3 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.62 8.96 -34.44 -0.31 -14.93 16 6 H 0.07 2.29 7.30 -52.48 -0.38 1.90 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.23 13.96 55.43 0.77 -27.46 16 9 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.06 1.00 5.07 -3.82 -0.02 0.98 16 14 N -0.67 -9.86 5.58 -115.05 -0.64 -10.51 16 15 C 0.04 0.46 6.17 -4.97 -0.03 0.43 16 16 C 0.52 6.21 7.87 -10.99 -0.09 6.12 16 17 O -0.52 -8.50 15.77 5.56 0.09 -8.41 16 18 N -0.71 -6.08 5.57 -53.81 -0.30 -6.37 16 19 C 0.08 0.69 6.43 -67.93 -0.44 0.25 16 20 C -0.20 -1.22 10.46 -26.70 -0.28 -1.50 16 21 C -0.19 -1.13 10.46 -26.69 -0.28 -1.41 16 22 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.88 7.75 -51.92 -0.40 0.48 16 24 H 0.06 1.32 6.95 -51.93 -0.36 0.95 16 25 H 0.01 0.29 7.20 -51.92 -0.37 -0.08 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.35 5.33 8.43 -39.29 -0.33 5.00 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.40 2.24 8.83 -40.82 -0.36 1.88 16 34 H 0.14 1.39 7.40 -51.93 -0.38 1.00 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 316.03 15.07 4.76 4.76 Total: -1.00 -33.27 316.03 -7.90 -41.17 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.38 Total: 2.08 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.53 Total: -12.46 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.17 Total: -44.34 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.27 -7.90 -41.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602662829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.811 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds