Wall clock time and date at job start Mon Mar 30 2020 17:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47084 * 2 1 4 4 C 1.52999 * 109.46779 * 239.99970 * 2 1 3 5 5 C 1.50701 * 109.46948 * 65.00300 * 4 2 1 6 6 H 1.07991 * 119.99972 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99916 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00009 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00129 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46936 * 90.00467 * 9 7 5 11 11 H 1.48497 * 109.46991 * 209.99925 * 9 7 5 12 12 H 1.48495 * 109.47105 * 330.00234 * 9 7 5 13 13 C 1.53004 * 109.46779 * 120.00258 * 2 1 3 14 14 N 1.46900 * 109.46714 * 184.14438 * 13 2 1 15 15 C 1.48801 * 111.18903 * 58.45438 * 14 13 2 16 16 C 1.54938 * 103.34926 * 159.50614 * 15 14 13 17 17 C 1.54595 * 102.92280 * 322.69248 * 16 15 14 18 18 C 1.47895 * 110.99980 * 175.79618 * 14 13 2 19 19 H 1.08997 * 109.91824 * 333.70334 * 18 14 13 20 20 C 1.50700 * 109.92114 * 94.80059 * 18 14 13 21 21 N 1.34774 * 120.00511 * 179.60201 * 20 18 14 22 22 O 1.21282 * 119.99650 * 359.59709 * 20 18 14 23 23 H 1.09003 * 109.46668 * 294.56557 * 1 2 3 24 24 H 1.09007 * 109.46765 * 54.56214 * 1 2 3 25 25 H 1.08993 * 109.47132 * 174.56656 * 1 2 3 26 26 H 1.08999 * 109.46758 * 184.99904 * 4 2 1 27 27 H 1.08996 * 109.47548 * 305.00021 * 4 2 1 28 28 H 0.96993 * 120.00202 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.47308 * 64.13968 * 13 2 1 30 30 H 1.08999 * 109.47212 * 304.13745 * 13 2 1 31 31 H 1.09004 * 110.52015 * 41.07778 * 15 14 13 32 32 H 1.09007 * 110.84853 * 278.09413 * 15 14 13 33 33 H 1.09003 * 110.72275 * 204.33340 * 16 15 14 34 34 H 1.09001 * 110.87727 * 81.12685 * 16 15 14 35 35 H 1.09006 * 110.30871 * 263.04398 * 17 16 15 36 36 H 1.08994 * 110.30889 * 140.87073 * 17 16 15 37 37 H 0.97004 * 119.99755 * 359.97438 * 21 20 18 38 38 H 0.97000 * 120.00228 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3756 7 6 1.9932 -0.4016 -3.7283 8 7 2.6763 -1.5188 -3.8512 9 14 1.4984 0.5628 -5.2496 10 1 2.5632 1.5430 -5.5823 11 1 1.3121 -0.3713 -6.3889 12 1 0.2267 1.2832 -4.9871 13 6 2.0400 -0.7213 1.2493 14 7 3.5056 -0.6352 1.3003 15 6 3.9610 0.7813 1.3137 16 6 5.3955 0.6904 1.8922 17 6 5.2678 -0.4197 2.9604 18 6 4.0286 -1.2351 2.5469 19 1 3.2720 -1.1834 3.3298 20 6 4.4168 -2.6705 2.3025 21 7 4.9280 -3.4107 3.3061 22 8 4.2692 -3.1598 1.2026 23 1 -0.3633 0.4273 0.9347 24 1 -0.3633 0.5959 -0.8374 25 1 -0.3633 -1.0230 -0.0973 26 1 3.1263 -0.7995 -1.2056 27 1 1.6054 -1.7198 -1.2952 28 1 2.9241 -1.8413 -4.7317 29 1 1.7385 -1.7681 1.2129 30 1 1.6174 -0.2521 2.1377 31 1 3.3224 1.3819 1.9615 32 1 3.9785 1.1927 0.3044 33 1 5.6870 1.6353 2.3507 34 1 6.1083 0.4022 1.1196 35 1 5.1196 0.0197 3.9469 36 1 6.1554 -1.0523 2.9566 37 1 5.0464 -3.0193 4.1858 38 1 5.1775 -4.3348 3.1489 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602680985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:57:34 Heat of formation + Delta-G solvation = -75.298075 kcal Electronic energy + Delta-G solvation = -18012.064605 eV Core-core repulsion = 15273.578177 eV Total energy + Delta-G solvation = -2738.486428 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.09475 -39.03045 -36.82961 -34.69687 -34.30207 -32.00437 -30.17186 -28.99086 -26.54181 -24.94155 -23.60640 -22.35977 -20.79490 -20.26191 -18.56102 -18.36957 -17.54371 -16.99938 -16.57045 -16.03247 -15.50571 -15.31626 -14.80866 -14.46044 -14.29626 -14.08597 -13.92587 -13.45409 -13.16600 -12.79876 -12.63401 -12.46348 -12.41490 -12.21142 -12.06633 -11.85724 -11.68107 -11.43750 -10.97200 -10.91942 -10.72412 -10.55583 -10.48380 -9.12311 -8.09985 -6.21578 1.38204 1.41228 1.51769 1.77484 2.44257 2.50207 3.20891 3.22384 3.66635 3.77916 4.01933 4.16336 4.27903 4.30403 4.33714 4.51905 4.62284 4.74846 4.81106 4.85642 4.92103 4.93382 5.04539 5.19380 5.28971 5.32824 5.42516 5.49500 5.65959 5.90920 5.97383 6.03716 6.07105 6.23306 6.36080 6.64528 6.99112 7.46282 7.53347 9.01728 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.006361 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.068752 B = 4400.546982 C = 4557.017936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 H 0.061 0.939 4 C 0.052 3.948 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.008 4.008 8 N -0.938 5.938 9 Si 0.964 3.036 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 C 0.070 3.930 14 N -0.525 5.525 15 C 0.037 3.963 16 C -0.120 4.120 17 C -0.108 4.108 18 C 0.042 3.958 19 H 0.102 0.898 20 C 0.510 3.490 21 N -0.837 5.837 22 O -0.580 6.580 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.034 0.966 26 H -0.007 1.007 27 H -0.035 1.035 28 H 0.258 0.742 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.051 0.949 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.418 0.582 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.268 4.132 20.864 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.097 4.097 3 H 0.080 0.920 4 C 0.015 3.985 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.205 4.205 8 N -0.579 5.579 9 Si 0.788 3.212 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.183 1.183 13 C -0.058 4.058 14 N -0.250 5.250 15 C -0.090 4.090 16 C -0.158 4.158 17 C -0.146 4.146 18 C -0.070 4.070 19 H 0.119 0.881 20 C 0.295 3.705 21 N -0.403 5.403 22 O -0.458 6.458 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.011 0.989 27 H -0.017 1.017 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.250 0.750 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.348 3.602 19.530 20.330 hybrid contribution -0.333 -0.125 -0.498 0.612 sum 4.015 3.478 19.032 19.760 Atomic orbital electron populations 1.21618 0.94716 1.00709 1.01240 1.21108 0.95808 0.98596 0.94211 0.92024 1.18771 0.94741 0.92834 0.92168 1.21752 1.34134 1.08467 0.92355 0.91961 1.26058 0.95405 0.96093 1.02913 1.70205 1.40527 1.23252 1.23884 0.85475 0.79085 0.78265 0.78359 1.19817 1.21188 1.18339 1.22202 0.86880 0.99414 0.97263 1.64201 1.10809 1.15165 1.34791 1.23256 0.96638 0.88354 1.00723 1.22487 0.95234 1.00100 0.97971 1.22427 0.95181 0.96432 1.00534 1.22478 1.00079 0.91614 0.92802 0.88084 1.21121 0.76203 0.89233 0.83992 1.43632 1.66860 1.16169 1.13651 1.90831 1.54542 1.73885 1.26514 0.91029 0.93353 0.94663 0.98890 1.01700 0.93302 0.93935 0.92500 0.91591 0.92530 0.87551 0.93008 0.86317 0.90270 0.75047 0.76484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 8.91 71.98 0.64 -4.21 16 2 C -0.08 -3.44 2.15 -10.79 -0.02 -3.46 16 3 H 0.06 2.61 6.70 -2.39 -0.02 2.60 16 4 C 0.05 3.05 4.39 29.85 0.13 3.18 16 5 C -0.53 -32.10 8.48 25.60 0.22 -31.88 16 6 H 0.06 3.56 7.06 -2.92 -0.02 3.53 16 7 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 8 N -0.94 -62.93 13.29 21.45 0.28 -62.64 16 9 Si 0.96 47.25 29.54 68.60 2.03 49.28 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.07 2.63 4.24 86.30 0.37 2.99 16 14 N -0.53 -19.10 3.83 -861.70 -3.30 -22.40 16 15 C 0.04 1.13 5.36 86.60 0.46 1.59 16 16 C -0.12 -2.72 7.06 31.80 0.22 -2.50 16 17 C -0.11 -1.91 6.48 31.47 0.20 -1.70 16 18 C 0.04 1.10 2.87 44.31 0.13 1.23 16 19 H 0.10 2.01 7.66 -2.39 -0.02 1.99 16 20 C 0.51 15.76 7.26 87.66 0.64 16.39 16 21 N -0.84 -15.04 8.75 -173.53 -1.52 -16.56 16 22 O -0.58 -27.01 17.30 -3.04 -0.05 -27.06 16 23 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.05 1.97 7.12 -2.38 -0.02 1.95 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 26 H -0.01 -0.49 7.59 -2.39 -0.02 -0.50 16 27 H -0.04 -2.36 8.14 -2.39 -0.02 -2.38 16 28 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.65 7.98 -2.39 -0.02 1.64 16 31 H 0.07 1.63 8.02 -2.38 -0.02 1.61 16 32 H 0.06 2.10 7.59 -2.38 -0.02 2.08 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.08 1.33 7.63 -2.39 -0.02 1.32 16 37 H 0.42 3.69 8.80 -92.71 -0.82 2.87 16 38 H 0.40 6.85 8.93 -92.71 -0.83 6.03 16 Total: -1.00 -86.87 307.06 0.30 -86.57 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -0.59 Total: 11.22 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 3.45 Total: -18.40 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -4.53 Total: -101.60 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.05 Total: -27.06 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -86.87 0.30 -86.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602680985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.273 kcal (2) G-P(sol) polarization free energy of solvation -86.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds