Wall clock time and date at job start Mon Mar 30 2020 17:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47040 * 2 1 4 4 C 1.52997 * 109.46947 * 120.00189 * 2 1 3 5 5 C 1.50705 * 109.47093 * 294.99870 * 4 2 1 6 6 H 1.08001 * 119.99767 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00116 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99885 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47095 * 89.99858 * 9 7 5 11 11 H 1.48498 * 109.47003 * 209.99840 * 9 7 5 12 12 H 1.48495 * 109.46995 * 329.99785 * 9 7 5 13 13 C 1.53004 * 109.47244 * 240.00020 * 2 1 3 14 14 N 1.46905 * 109.46752 * 61.41890 * 13 2 1 15 15 C 1.46903 * 110.99728 * 176.46402 * 14 13 2 16 16 C 1.50249 * 109.97930 * 186.33432 * 15 14 13 17 17 O 1.21283 * 118.62851 * 197.20384 * 16 15 14 18 18 N 1.33713 * 122.75065 * 17.18120 * 16 15 14 19 19 C 1.46012 * 122.93117 * 358.33339 * 18 16 15 20 20 H 1.08996 * 109.37655 * 257.99116 * 19 18 16 21 21 C 1.52997 * 109.37586 * 138.21819 * 19 18 16 22 22 C 1.47185 * 110.99963 * 53.57511 * 14 13 2 23 23 H 1.08999 * 109.47309 * 185.01533 * 1 2 3 24 24 H 1.08997 * 109.47143 * 305.02136 * 1 2 3 25 25 H 1.09010 * 109.46875 * 65.01575 * 1 2 3 26 26 H 1.08997 * 109.47057 * 175.00372 * 4 2 1 27 27 H 1.08996 * 109.47199 * 55.00024 * 4 2 1 28 28 H 0.96992 * 120.00218 * 180.02562 * 8 7 5 29 29 H 1.08991 * 109.46893 * 181.41810 * 13 2 1 30 30 H 1.09000 * 109.46768 * 301.42358 * 13 2 1 31 31 H 1.08998 * 109.38937 * 306.49174 * 15 14 13 32 32 H 1.09003 * 109.38385 * 66.18200 * 15 14 13 33 33 H 0.97008 * 118.53875 * 178.35829 * 18 16 15 34 34 H 1.08996 * 109.46959 * 60.00261 * 21 19 18 35 35 H 1.09006 * 109.46664 * 180.02562 * 21 19 18 36 36 H 1.08996 * 109.47258 * 300.00028 * 21 19 18 37 37 H 1.08998 * 109.59461 * 312.13463 * 22 14 13 38 38 H 1.08997 * 109.59815 * 72.59080 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0807 0.9746 2.3756 7 6 1.9932 -0.4017 3.7283 8 7 2.6772 -1.5183 3.8511 9 14 1.4984 0.5626 5.2497 10 1 0.1715 0.0933 5.7233 11 1 2.5079 0.3532 6.3184 12 1 1.4225 2.0077 4.9167 13 6 2.0401 -0.7213 -1.2493 14 7 1.5786 -0.0092 -2.4484 15 6 2.1192 -0.6255 -3.6674 16 6 1.7619 0.2074 -4.8657 17 8 1.8437 -0.2939 -5.9671 18 7 1.3572 1.4781 -4.7688 19 6 1.1909 2.1628 -3.4900 20 1 0.1317 2.2019 -3.2357 21 6 1.7390 3.5869 -3.6016 22 6 1.9492 1.4141 -2.3920 23 1 -0.3634 -1.0237 0.0898 24 1 -0.3633 0.5897 0.8416 25 1 -0.3633 0.4341 -0.9316 26 1 3.1263 -0.7995 1.2056 27 1 1.6054 -1.7198 1.2951 28 1 2.9244 -1.8413 4.7316 29 1 3.1297 -0.7433 -1.2366 30 1 1.6560 -1.7413 -1.2621 31 1 3.2039 -0.6965 -3.5865 32 1 1.7004 -1.6251 -3.7837 33 1 1.1651 1.9668 -5.5845 34 1 1.1946 4.1260 -4.3768 35 1 1.6160 4.0993 -2.6474 36 1 2.7973 3.5497 -3.8599 37 1 1.6806 1.8235 -1.4182 38 1 3.0222 1.5191 -2.5518 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602685939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:26 Heat of formation + Delta-G solvation = -68.201490 kcal Electronic energy + Delta-G solvation = -17704.520725 eV Core-core repulsion = 14966.342028 eV Total energy + Delta-G solvation = -2738.178697 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 4.39 seconds Orbital eigenvalues (eV) -41.48235 -39.03289 -37.15515 -35.53455 -33.87295 -32.07936 -29.37255 -28.23674 -27.93138 -25.67661 -23.57546 -23.37263 -20.60297 -20.16882 -18.54464 -18.27447 -17.63708 -16.62459 -16.50684 -16.17059 -15.81785 -15.72465 -14.84089 -14.49811 -14.17724 -14.09285 -13.75812 -13.40265 -13.27384 -13.10688 -12.77883 -12.70598 -12.58729 -12.37803 -12.19874 -12.07404 -11.89850 -11.33835 -11.22638 -10.97322 -10.77366 -10.49397 -10.13114 -9.44943 -8.14199 -6.22803 1.43627 1.43966 1.49661 1.54469 2.25715 2.44439 2.73232 3.20204 3.50501 3.75803 3.92886 4.15987 4.21156 4.28432 4.38437 4.45556 4.53975 4.64225 4.70618 4.90434 4.92156 4.94799 5.05410 5.11878 5.32349 5.32910 5.51141 5.55181 5.57191 5.70090 5.83244 5.87112 5.92303 6.01854 6.23639 6.33243 6.94000 7.13702 7.45780 8.97857 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039483 B = 0.005051 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.993218 B = 5541.838337 C = 5980.244696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.074 4.074 3 H 0.067 0.933 4 C 0.031 3.969 5 C -0.524 4.524 6 H 0.064 0.936 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.260 1.260 13 C 0.068 3.932 14 N -0.527 5.527 15 C 0.037 3.963 16 C 0.528 3.472 17 O -0.601 6.601 18 N -0.702 5.702 19 C 0.144 3.856 20 H 0.092 0.908 21 C -0.158 4.158 22 C 0.024 3.976 23 H 0.032 0.968 24 H 0.040 0.960 25 H 0.069 0.931 26 H -0.013 1.013 27 H -0.011 1.011 28 H 0.260 0.740 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.405 0.595 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.684 9.794 -13.496 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.562 4.562 6 H 0.083 0.917 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.184 1.184 13 C -0.059 4.059 14 N -0.252 5.252 15 C -0.094 4.094 16 C 0.315 3.685 17 O -0.483 6.483 18 N -0.353 5.353 19 C 0.040 3.960 20 H 0.109 0.891 21 C -0.216 4.216 22 C -0.103 4.103 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.005 0.995 27 H 0.008 0.992 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.131 0.869 33 H 0.242 0.758 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.045 9.292 -13.746 16.870 hybrid contribution 0.883 0.062 0.878 1.247 sum -2.162 9.354 -12.868 16.055 Atomic orbital electron populations 1.21513 0.94522 1.00467 1.00750 1.21134 0.96811 0.98832 0.92522 0.91441 1.19032 0.94213 0.94728 0.92715 1.21642 1.34130 1.08591 0.91885 0.91738 1.25923 0.95336 0.96058 1.02616 1.70102 1.40433 1.23090 1.24163 0.85549 0.77809 0.79507 0.78816 1.20160 1.21329 1.18436 1.22139 0.97079 0.98086 0.88642 1.62574 1.58631 1.02864 1.01174 1.22254 1.00386 0.99268 0.87453 1.20246 0.75458 0.82698 0.90095 1.90733 1.56449 1.71933 1.29151 1.45723 1.66727 1.12037 1.10823 1.21219 1.01080 0.92389 0.81343 0.89059 1.22118 1.01630 0.93496 1.04403 1.22839 0.98268 0.88274 1.00967 0.94898 0.94058 0.91171 0.99459 0.99245 0.93085 0.95130 0.90972 0.90534 0.86886 0.75771 0.90211 0.89503 0.92271 0.87407 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 8.84 71.98 0.64 -3.33 16 2 C -0.07 -2.73 1.90 -10.79 -0.02 -2.75 16 3 H 0.07 2.37 5.99 -2.39 -0.01 2.36 16 4 C 0.03 1.53 4.45 29.85 0.13 1.66 16 5 C -0.52 -28.21 8.47 25.60 0.22 -27.99 16 6 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 8 N -0.94 -56.12 13.29 21.45 0.28 -55.84 16 9 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 13 C 0.07 2.11 4.54 86.30 0.39 2.50 16 14 N -0.53 -13.50 4.04 -900.88 -3.64 -17.14 16 15 C 0.04 0.92 5.59 85.42 0.48 1.39 16 16 C 0.53 13.85 7.81 87.68 0.69 14.54 16 17 O -0.60 -20.18 17.82 -3.04 -0.05 -20.24 16 18 N -0.70 -13.83 5.18 -445.45 -2.31 -16.14 16 19 C 0.14 2.39 3.88 45.08 0.17 2.57 16 20 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 21 C -0.16 -1.82 9.42 71.98 0.68 -1.14 16 22 C 0.02 0.53 4.62 86.25 0.40 0.92 16 23 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.04 1.50 7.10 -2.39 -0.02 1.49 16 25 H 0.07 2.03 7.50 -2.38 -0.02 2.02 16 26 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 27 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 32 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.41 6.76 8.74 -92.70 -0.81 5.95 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 2.42 5.53 -2.39 -0.01 2.40 16 38 H 0.04 0.97 8.05 -2.39 -0.02 0.95 16 Total: -1.00 -66.38 303.90 0.77 -65.61 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.22 Total: 9.89 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 4.23 Total: -11.29 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -5.66 Total: -89.11 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.24 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -66.38 0.77 -65.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602685939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.587 kcal (2) G-P(sol) polarization free energy of solvation -66.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds