Wall clock time and date at job start Mon Mar 30 2020 17:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47315 * 2 1 4 4 C 1.45754 * 117.94643 * 89.99536 * 3 2 1 5 5 C 1.52924 * 110.49139 * 199.07737 * 4 3 2 6 6 C 1.53346 * 108.67097 * 309.25032 * 5 4 3 7 7 H 1.08994 * 109.67866 * 307.75578 * 6 5 4 8 8 N 1.46910 * 109.66981 * 187.26039 * 6 5 4 9 9 C 1.46903 * 110.99700 * 154.05187 * 8 6 5 10 10 H 1.09000 * 109.46676 * 35.17559 * 9 8 6 11 11 C 1.53001 * 109.46991 * 155.17226 * 9 8 6 12 12 C 1.50695 * 109.47300 * 275.17661 * 9 8 6 13 13 H 1.08003 * 119.99862 * 359.97438 * 12 9 8 14 14 C 1.37881 * 120.00105 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99822 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99954 * 179.97438 * 14 12 9 17 17 H 1.48492 * 109.47102 * 90.00051 * 16 14 12 18 18 H 1.48505 * 109.46662 * 210.00013 * 16 14 12 19 19 H 1.48499 * 109.47269 * 329.99739 * 16 14 12 20 20 C 1.53072 * 108.42581 * 67.53137 * 6 5 4 21 21 C 1.33359 * 117.95048 * 269.73844 * 3 2 1 22 22 O 1.21275 * 118.24064 * 357.77171 * 21 3 2 23 23 H 1.09004 * 109.46970 * 60.00238 * 1 2 3 24 24 H 1.09002 * 109.46736 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46988 * 300.00236 * 1 2 3 26 26 H 1.09003 * 109.47476 * 240.00345 * 2 1 3 27 27 H 1.08996 * 109.47094 * 120.00068 * 2 1 3 28 28 H 1.09003 * 109.30204 * 319.39139 * 4 3 2 29 29 H 1.09008 * 109.30122 * 78.97378 * 4 3 2 30 30 H 1.08996 * 109.60294 * 69.00526 * 5 4 3 31 31 H 1.08995 * 109.60720 * 189.49224 * 5 4 3 32 32 H 1.00892 * 110.99716 * 278.00511 * 8 6 5 33 33 H 1.08993 * 109.47043 * 185.49827 * 11 9 8 34 34 H 1.08998 * 109.47106 * 305.50230 * 11 9 8 35 35 H 1.09006 * 109.46791 * 65.50034 * 11 9 8 36 36 H 0.96997 * 119.99903 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.40148 * 71.22832 * 20 6 5 38 38 H 1.09002 * 109.39671 * 190.97019 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2460 2.0252 1.2876 5 6 2.2869 3.5453 1.1260 6 6 3.2667 3.8930 -0.0013 7 1 4.2244 3.4060 0.1817 8 7 3.4555 5.3487 -0.0608 9 6 4.7616 5.6867 -0.6421 10 1 5.0128 4.9623 -1.4169 11 6 4.7002 7.0875 -1.2544 12 6 5.8144 5.6551 0.4356 13 1 5.5406 5.4090 1.4509 14 6 7.1271 5.9414 0.1256 15 7 7.4604 6.2416 -1.1107 16 14 8.4320 5.9030 1.4617 17 1 9.0104 4.5381 1.5496 18 1 9.5054 6.8753 1.1333 19 1 7.8177 6.2650 2.7643 20 6 2.6788 3.3951 -1.3240 21 6 2.2318 1.9687 -1.1780 22 8 2.0506 1.3178 -2.1851 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.4409 1.7572 1.9718 29 1 3.1963 1.6839 1.6982 30 1 1.2926 3.9131 0.8726 31 1 2.6225 4.0032 2.0564 32 1 2.7066 5.7897 -0.5733 33 1 5.6365 7.2999 -1.7703 34 1 3.8746 7.1379 -1.9642 35 1 4.5457 7.8227 -0.4645 36 1 8.3839 6.4426 -1.3288 37 1 1.8283 4.0185 -1.5997 38 1 3.4384 3.4558 -2.1034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172031069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:29 Heat of formation + Delta-G solvation = -42.984174 kcal Electronic energy + Delta-G solvation = -17919.863937 eV Core-core repulsion = 15182.778745 eV Total energy + Delta-G solvation = -2737.085192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35125 -36.95379 -35.81049 -33.76480 -31.82955 -29.96309 -29.29691 -27.31075 -25.15893 -23.86465 -23.25200 -20.90557 -20.30664 -18.39923 -16.55991 -16.45232 -15.98789 -15.38368 -14.88647 -14.24221 -14.13277 -14.00886 -13.71341 -13.19676 -13.06521 -12.72579 -12.38429 -12.07145 -11.70021 -11.58624 -11.33473 -11.11525 -10.93226 -10.81884 -10.69001 -10.50647 -10.33886 -10.02654 -9.96416 -9.45737 -9.11505 -8.62638 -8.42059 -7.31700 -5.99263 -4.02785 2.86083 3.13597 3.30904 3.37879 3.41525 4.42364 4.71527 4.86576 4.97013 5.11207 5.16264 5.17147 5.31581 5.32961 5.49366 5.59055 5.62482 5.77738 5.79590 5.92104 6.03784 6.10406 6.14835 6.41154 6.54519 6.58765 6.74170 6.94611 7.01561 7.42080 7.60334 7.71550 7.89077 8.21169 8.32255 8.35799 8.68672 9.04123 9.62396 11.07581 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032221 B = 0.005959 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.778985 B = 4697.344840 C = 4967.414294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.604 5.604 4 C 0.114 3.886 5 C -0.123 4.123 6 C 0.094 3.906 7 H 0.090 0.910 8 N -0.676 5.676 9 C 0.210 3.790 10 H 0.003 0.997 11 C -0.140 4.140 12 C -0.495 4.495 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.895 3.105 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.163 4.163 21 C 0.525 3.475 22 O -0.564 6.564 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.318 0.682 33 H 0.085 0.915 34 H 0.005 0.995 35 H 0.036 0.964 36 H 0.259 0.741 37 H 0.094 0.906 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.416 -8.090 4.404 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.337 5.337 4 C -0.009 4.009 5 C -0.161 4.161 6 C -0.018 4.018 7 H 0.108 0.892 8 N -0.305 5.305 9 C 0.103 3.897 10 H 0.021 0.979 11 C -0.199 4.199 12 C -0.534 4.534 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.723 3.277 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.204 4.204 21 C 0.314 3.686 22 O -0.443 6.443 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.104 0.896 34 H 0.024 0.976 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.084 -8.268 4.436 14.522 hybrid contribution 0.639 -0.139 -0.230 0.694 sum -10.444 -8.407 4.206 14.052 Atomic orbital electron populations 1.22084 0.96064 1.01903 1.02190 1.21434 0.94335 0.83246 1.03142 1.47403 1.65622 1.14332 1.06390 1.21471 1.01310 0.94033 0.84101 1.21915 1.00059 0.92713 1.01435 1.21587 0.98413 0.91184 0.90610 0.89162 1.60778 1.05753 1.05290 1.58694 1.19209 0.84523 0.92639 0.93375 0.97924 1.21930 1.00569 0.98887 0.98485 1.21150 0.91209 1.45804 0.95187 0.92027 1.24966 0.98602 0.95540 0.95441 1.69893 1.18055 1.47949 1.17705 0.86543 0.81297 0.77638 0.82174 1.20903 1.21374 1.19891 1.22529 1.02813 0.92374 1.02706 1.20267 0.76135 0.89713 0.82487 1.90657 1.53048 1.64587 1.36049 0.92350 0.91837 0.92686 0.89681 0.90801 0.90990 0.91531 0.91834 0.88915 0.86553 0.89630 0.97571 0.94465 0.93065 0.88831 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.23 37.16 0.38 -1.28 16 2 C 0.10 1.18 5.94 -4.04 -0.02 1.15 16 3 N -0.60 -8.26 2.81 -174.95 -0.49 -8.75 16 4 C 0.11 1.33 6.32 -4.48 -0.03 1.30 16 5 C -0.12 -1.64 5.64 -26.59 -0.15 -1.79 16 6 C 0.09 1.60 2.33 -67.49 -0.16 1.44 16 7 H 0.09 1.79 7.62 -51.93 -0.40 1.40 16 8 N -0.68 -13.24 6.07 -100.72 -0.61 -13.85 16 9 C 0.21 5.05 2.43 -68.86 -0.17 4.88 16 10 H 0.00 0.08 7.40 -51.93 -0.38 -0.30 16 11 C -0.14 -3.30 8.93 37.16 0.33 -2.96 16 12 C -0.49 -13.23 8.50 -34.44 -0.29 -13.52 16 13 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 14 C 0.06 1.51 5.30 -17.82 -0.09 1.41 16 15 N -0.90 -25.37 11.38 55.43 0.63 -24.74 16 16 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 20 C -0.16 -2.68 5.35 -28.09 -0.15 -2.83 16 21 C 0.53 8.81 7.46 -11.86 -0.09 8.72 16 22 O -0.56 -11.18 16.17 5.56 0.09 -11.09 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 1.13 7.12 -51.93 -0.37 0.76 16 27 H 0.07 0.68 8.01 -51.93 -0.42 0.26 16 28 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 29 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 30 H 0.06 0.80 8.12 -51.93 -0.42 0.37 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.32 5.65 7.84 -39.30 -0.31 5.34 16 33 H 0.09 2.23 6.24 -51.93 -0.32 1.90 16 34 H 0.01 0.11 8.01 -51.93 -0.42 -0.31 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.09 1.40 7.89 -51.93 -0.41 0.99 16 38 H 0.10 1.81 7.76 -51.93 -0.40 1.40 16 LS Contribution 304.83 15.07 4.59 4.59 Total: -1.00 -30.10 304.83 -7.60 -37.70 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.35 Total: 3.48 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.44 Total: -3.49 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.47 Total: -47.34 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.10 -7.60 -37.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172031069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.285 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds