Wall clock time and date at job start Mon Mar 30 2020 17:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47416 * 2 1 4 4 C 1.52996 * 109.47365 * 239.99818 * 2 1 3 5 5 C 1.53002 * 109.47346 * 174.99846 * 4 2 1 6 6 C 1.50706 * 109.46931 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00193 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99398 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99350 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00608 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47326 * 270.00340 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00090 * 10 8 6 13 13 H 1.48498 * 109.47210 * 149.99801 * 10 8 6 14 14 N 1.46901 * 109.47028 * 119.99923 * 2 1 3 15 15 C 1.46903 * 110.99927 * 274.99919 * 14 2 1 16 16 H 1.08996 * 109.70247 * 35.58614 * 15 14 2 17 17 C 1.53295 * 109.70657 * 156.21451 * 15 14 2 18 18 N 1.46836 * 109.39948 * 173.48236 * 17 15 14 19 19 C 1.46833 * 111.56061 * 294.61401 * 18 17 15 20 20 C 1.53293 * 109.40080 * 65.38819 * 19 18 17 21 21 C 1.51436 * 108.24310 * 306.20089 * 20 19 18 22 22 O 1.20756 * 121.11459 * 229.05296 * 21 20 19 23 23 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47083 * 300.00124 * 1 2 3 25 25 H 1.09003 * 109.46520 * 59.99872 * 1 2 3 26 26 H 1.09004 * 109.47368 * 55.00034 * 4 2 1 27 27 H 1.09004 * 109.47108 * 295.00135 * 4 2 1 28 28 H 1.09000 * 109.46986 * 60.00254 * 5 4 2 29 29 H 1.08993 * 109.47662 * 300.00031 * 5 4 2 30 30 H 0.97005 * 119.99661 * 179.97438 * 9 8 6 31 31 H 1.00904 * 110.99734 * 151.04804 * 14 2 1 32 32 H 1.09004 * 109.48299 * 293.45643 * 17 15 14 33 33 H 1.09004 * 109.48710 * 53.50533 * 17 15 14 34 34 H 1.00899 * 111.00104 * 58.97289 * 18 17 15 35 35 H 1.09000 * 109.47976 * 305.40195 * 19 18 17 36 36 H 1.09005 * 109.47629 * 185.36339 * 19 18 17 37 37 H 1.09001 * 109.70787 * 186.51845 * 20 19 18 38 38 H 1.08994 * 109.71574 * 65.89369 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0673 -1.3243 -2.5438 7 1 3.3688 -1.8047 -3.2129 8 6 5.4186 -1.3614 -2.8149 9 7 5.8570 -1.9814 -3.8887 10 14 6.6268 -0.5310 -1.6573 11 1 6.8325 0.8767 -2.0829 12 1 6.0846 -0.5560 -0.2750 13 1 7.9235 -1.2537 -1.6935 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2226 2.3469 16 1 1.2530 0.9283 2.3000 17 6 2.0077 -0.5785 3.6517 18 7 2.2271 0.3223 4.7903 19 6 3.5878 0.8741 4.7874 20 6 3.7698 1.7738 3.5597 21 6 3.3959 0.9762 2.3279 22 8 4.1210 0.9420 1.3628 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.6055 -0.2618 -2.1370 27 1 1.7517 -1.7716 -1.2055 28 1 3.9995 -1.0728 -0.4259 29 1 3.8533 0.4369 -1.3573 30 1 6.8077 -2.0072 -4.0797 31 1 2.9173 -1.1205 1.0287 32 1 1.0245 -1.0411 3.7384 33 1 2.7750 -1.3527 3.6475 34 1 1.5382 1.0593 4.8064 35 1 4.3106 0.0590 4.7513 36 1 3.7446 1.4594 5.6935 37 1 4.8095 2.0934 3.4890 38 1 3.1215 2.6460 3.6436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246293004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:54 Heat of formation + Delta-G solvation = -46.770173 kcal Electronic energy + Delta-G solvation = -18068.705133 eV Core-core repulsion = 15331.455768 eV Total energy + Delta-G solvation = -2737.249365 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.36010 -37.07474 -36.77862 -33.24253 -31.93256 -30.49647 -29.63526 -27.52173 -25.19932 -23.09661 -22.87781 -21.04989 -19.80254 -19.52783 -16.93809 -16.40705 -16.05432 -15.55338 -15.36032 -15.02891 -14.39022 -14.04808 -13.65453 -13.39513 -13.13562 -12.61930 -12.48571 -12.35927 -12.28192 -12.00069 -11.64153 -11.52784 -11.37792 -11.18583 -10.88675 -10.66371 -9.94211 -9.76856 -9.64859 -9.38450 -9.09680 -8.84768 -8.45815 -8.13174 -5.97412 -3.94613 1.90867 3.39310 3.45411 3.58869 3.81533 3.92753 4.31795 4.54929 4.63376 4.79491 4.83157 4.93576 5.00113 5.34098 5.38193 5.39854 5.52134 5.59544 5.60517 5.66272 5.79710 5.87707 6.05394 6.20541 6.38261 6.39450 6.62044 6.75969 6.94765 7.01406 7.18095 7.40340 7.47903 7.56546 7.64241 7.89081 8.61404 9.08072 9.66609 11.15857 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024627 B = 0.007672 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.706885 B = 3648.815402 C = 4478.493772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.081 3.919 3 H 0.038 0.962 4 C -0.105 4.105 5 C -0.008 4.008 6 C -0.518 4.518 7 H 0.071 0.929 8 C 0.067 3.933 9 N -0.906 5.906 10 Si 0.877 3.123 11 H -0.281 1.281 12 H -0.258 1.258 13 H -0.291 1.291 14 N -0.664 5.664 15 C 0.006 3.994 16 H 0.105 0.895 17 C 0.075 3.925 18 N -0.683 5.683 19 C 0.063 3.937 20 C -0.210 4.210 21 C 0.312 3.688 22 O -0.423 6.423 23 H 0.061 0.939 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.015 0.985 29 H 0.010 0.990 30 H 0.261 0.739 31 H 0.357 0.643 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.344 0.656 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 7.388 18.500 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 H 0.056 0.944 4 C -0.143 4.143 5 C -0.045 4.045 6 C -0.556 4.556 7 H 0.089 0.911 8 C -0.134 4.134 9 N -0.546 5.546 10 Si 0.704 3.296 11 H -0.207 1.207 12 H -0.182 1.182 13 H -0.217 1.217 14 N -0.298 5.298 15 C -0.108 4.108 16 H 0.123 0.877 17 C -0.055 4.055 18 N -0.311 5.311 19 C -0.067 4.067 20 C -0.251 4.251 21 C 0.182 3.818 22 O -0.293 6.293 23 H 0.080 0.920 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.033 0.967 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.180 0.820 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.833 6.521 18.475 21.492 hybrid contribution 1.543 1.797 -0.520 2.425 sum -7.289 8.318 17.956 21.089 Atomic orbital electron populations 1.21813 0.95330 1.02064 1.00255 1.21668 0.94507 0.96232 0.90472 0.94429 1.21656 0.98585 0.99825 0.94271 1.19531 0.91372 0.96475 0.97125 1.21179 0.92876 1.34127 1.07424 0.91128 1.25011 0.98436 0.94931 0.95013 1.69929 1.14490 1.43796 1.26338 0.86804 0.80337 0.79451 0.82991 1.20664 1.18208 1.21746 1.60772 1.34719 1.30219 1.04114 1.23189 0.95945 0.95944 0.95699 0.87707 1.22084 1.04129 0.94963 0.84348 1.60540 1.04124 1.23440 1.42990 1.22081 0.91233 0.97499 0.95857 1.23173 1.04668 1.00465 0.96745 1.26043 0.88623 0.79473 0.87624 1.90583 1.50984 1.53205 1.34520 0.91986 0.93902 0.92726 0.92191 0.91923 0.96696 0.97163 0.92899 0.82012 0.88715 0.90204 0.83832 0.90288 0.89517 0.89090 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.40 37.16 0.35 -1.51 16 2 C 0.08 1.35 2.22 -67.71 -0.15 1.20 16 3 H 0.04 0.68 7.38 -51.93 -0.38 0.29 16 4 C -0.11 -2.18 4.74 -26.73 -0.13 -2.31 16 5 C -0.01 -0.19 3.49 -27.88 -0.10 -0.29 16 6 C -0.52 -15.49 9.66 -34.44 -0.33 -15.83 16 7 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.91 -29.10 13.96 55.43 0.77 -28.33 16 10 Si 0.88 23.47 27.47 -169.99 -4.67 18.80 16 11 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.26 -6.82 6.54 56.52 0.37 -6.45 16 13 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 14 N -0.66 -10.39 5.93 -100.41 -0.59 -10.98 16 15 C 0.01 0.08 2.68 -68.35 -0.18 -0.11 16 16 H 0.11 1.13 7.13 -51.93 -0.37 0.76 16 17 C 0.08 0.75 6.19 -3.71 -0.02 0.73 16 18 N -0.68 -5.65 6.82 -113.54 -0.77 -6.42 16 19 C 0.06 0.52 6.57 -3.71 -0.02 0.50 16 20 C -0.21 -2.06 6.31 -27.37 -0.17 -2.23 16 21 C 0.31 4.38 6.39 -28.31 -0.18 4.20 16 22 O -0.42 -8.25 15.89 6.00 0.10 -8.15 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.50 7.43 -51.93 -0.39 0.11 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.01 0.38 5.38 -51.93 -0.28 0.10 16 29 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 30 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 31 H 0.36 6.57 5.75 -39.29 -0.23 6.35 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.34 2.23 8.79 -39.29 -0.35 1.89 16 35 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 301.03 15.07 4.54 4.54 Total: -1.00 -33.78 301.03 -7.87 -41.65 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.19 Total: 2.58 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.04 Total: -13.68 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.60 Total: -45.74 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.10 Total: -8.15 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -4.67 Total: 18.80 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.78 -7.87 -41.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246293004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.122 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds