Wall clock time and date at job start Mon Mar 30 2020 17:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 N 1.46500 * 109.47361 * 185.00342 * 4 2 1 6 6 C 1.34770 * 120.00423 * 180.02562 * 5 4 2 7 7 O 1.21287 * 120.00246 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.00338 * 180.02562 * 6 5 4 9 9 H 1.09005 * 109.46830 * 300.00121 * 8 6 5 10 10 C 1.53001 * 109.46770 * 59.99859 * 8 6 5 11 11 C 1.52995 * 109.47276 * 179.97438 * 8 6 5 12 12 C 1.53007 * 117.49687 * 128.62013 * 11 8 6 13 13 C 1.53000 * 117.49712 * 60.00046 * 11 8 6 14 14 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 15 15 C 1.36931 * 119.99788 * 274.99780 * 14 2 1 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 2 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 2 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48490 * 109.47071 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 25 25 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 26 26 H 1.09005 * 109.47349 * 305.00426 * 4 2 1 27 27 H 1.09002 * 109.47351 * 65.00597 * 4 2 1 28 28 H 0.96998 * 119.99598 * 0.02562 * 5 4 2 29 29 H 1.08999 * 109.46573 * 179.97438 * 10 8 6 30 30 H 1.08998 * 109.47434 * 299.99768 * 10 8 6 31 31 H 1.09005 * 109.47230 * 60.00507 * 10 8 6 32 32 H 1.08999 * 115.55113 * 274.33192 * 11 8 6 33 33 H 1.08992 * 117.49557 * 0.02562 * 12 11 8 34 34 H 1.08999 * 117.49355 * 145.02567 * 12 11 8 35 35 H 1.09008 * 117.50076 * 214.97699 * 13 11 8 36 36 H 1.08998 * 117.50184 * 359.97438 * 13 11 8 37 37 H 0.97000 * 119.99792 * 94.99575 * 14 2 1 38 38 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8266 -1.1905 6 6 4.1731 -1.4285 -2.1910 7 8 3.5701 -1.8836 -3.1398 8 6 5.6750 -1.5373 -2.1303 9 1 6.1100 -0.5388 -2.0837 10 6 6.0791 -2.3283 -0.8846 11 6 6.1850 -2.2585 -3.3795 12 6 7.3037 -1.5848 -4.1769 13 6 5.8803 -1.6215 -4.7368 14 7 2.0183 -0.6906 1.1963 15 6 2.1491 -0.0075 2.3757 16 1 1.8919 1.0404 2.4243 17 6 2.6062 -0.6633 3.5106 18 7 2.9191 -1.9403 3.4515 19 14 2.7773 0.2668 5.1216 20 1 1.4532 0.8035 5.5263 21 1 3.2816 -0.6527 6.1728 22 1 3.7337 1.3892 4.9460 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8898 25 1 -0.3632 0.5139 -0.8901 26 1 1.6054 -1.7199 -1.2950 27 1 1.7518 -0.1584 -2.1369 28 1 3.9824 -0.4630 -0.4315 29 1 7.1653 -2.4073 -0.8410 30 1 5.7158 -1.8149 0.0056 31 1 5.6441 -3.3267 -0.9312 32 1 6.1909 -3.3470 -3.3244 33 1 7.6765 -0.6282 -3.8113 34 1 8.0459 -2.2303 -4.6465 35 1 5.6861 -2.2911 -5.5749 36 1 5.3161 -0.6889 -4.7399 37 1 2.2489 -1.6318 1.1527 38 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266930210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:32 Heat of formation + Delta-G solvation = -35.992759 kcal Electronic energy + Delta-G solvation = -17519.603659 eV Core-core repulsion = 14782.821638 eV Total energy + Delta-G solvation = -2736.782021 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00630 -38.40593 -37.49683 -35.17790 -33.92546 -32.80320 -30.50632 -27.35317 -25.75529 -25.25440 -23.16685 -22.34148 -21.70189 -20.53342 -19.32511 -17.91326 -17.19343 -16.89894 -16.26469 -16.04388 -15.53541 -15.31586 -15.13026 -14.65586 -13.87158 -13.66835 -13.62733 -13.36167 -13.16645 -13.04293 -12.73497 -12.67384 -12.49982 -12.32658 -12.21746 -11.97009 -11.69322 -11.63606 -11.31068 -10.96108 -10.93150 -10.50943 -9.94577 -9.01082 -7.89827 -5.18900 1.51497 1.52743 1.58714 1.73146 2.29606 2.59216 3.06477 3.44298 3.63920 3.84018 3.92551 3.96422 4.02332 4.21557 4.31595 4.39529 4.41415 4.61008 4.64366 4.74114 4.84149 4.85488 4.91695 5.02739 5.06216 5.09241 5.22093 5.25818 5.30934 5.37674 5.44963 5.57377 5.63775 6.30461 6.67448 7.33693 7.38091 8.10115 8.35344 9.32637 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026753 B = 0.005844 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.369907 B = 4790.363767 C = 5545.659595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.059 0.941 4 C 0.124 3.876 5 N -0.714 5.714 6 C 0.509 3.491 7 O -0.578 6.578 8 C -0.072 4.072 9 H 0.112 0.888 10 C -0.136 4.136 11 C -0.148 4.148 12 C -0.158 4.158 13 C -0.169 4.169 14 N -0.731 5.731 15 C -0.237 4.237 16 H 0.077 0.923 17 C -0.068 4.068 18 N -0.966 5.966 19 Si 0.967 3.033 20 H -0.283 1.283 21 H -0.301 1.301 22 H -0.276 1.276 23 H 0.041 0.959 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.409 0.591 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.373 0.627 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 3.201 -12.113 14.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.051 3.949 3 H 0.077 0.923 4 C -0.001 4.001 5 N -0.365 5.365 6 C 0.296 3.704 7 O -0.458 6.458 8 C -0.093 4.093 9 H 0.130 0.870 10 C -0.193 4.193 11 C -0.166 4.166 12 C -0.194 4.194 13 C -0.207 4.207 14 N -0.372 5.372 15 C -0.368 4.368 16 H 0.095 0.905 17 C -0.261 4.261 18 N -0.617 5.617 19 Si 0.796 3.204 20 H -0.210 1.210 21 H -0.227 1.227 22 H -0.202 1.202 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.245 0.755 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.205 0.795 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.410 3.041 -12.654 14.507 hybrid contribution -0.061 -0.085 1.518 1.521 sum 6.348 2.957 -11.136 13.155 Atomic orbital electron populations 1.22238 0.96915 1.01066 1.01313 1.20676 0.93518 0.95620 0.85131 0.92273 1.21519 0.80276 1.00085 0.98187 1.46047 1.07875 1.59022 1.23566 1.21177 0.91117 0.76632 0.81478 1.90629 1.71253 1.49229 1.34739 1.20886 0.89941 1.02009 0.96510 0.87007 1.21695 1.03193 0.99455 0.94991 1.21948 1.04620 0.98794 0.91270 1.23173 0.91225 1.02691 1.02351 1.22739 0.98920 1.02352 0.96650 1.42579 1.78337 1.10271 1.05991 1.19533 1.35072 0.94130 0.88088 0.90504 1.25431 1.03044 0.96641 1.00970 1.69807 1.52539 1.10067 1.29243 0.85319 0.77744 0.77384 0.79908 1.20998 1.22722 1.20234 0.94029 0.93651 0.90885 0.93538 0.90421 0.75495 0.89254 0.92676 0.93410 0.88186 0.87681 0.87177 0.88986 0.90311 0.79542 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 9.49 71.98 0.68 -4.50 16 2 C 0.16 5.82 3.05 44.99 0.14 5.95 16 3 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 4 C 0.12 4.21 5.23 86.38 0.45 4.66 16 5 N -0.71 -23.72 5.28 -463.06 -2.45 -26.16 16 6 C 0.51 16.69 7.03 87.66 0.62 17.31 16 7 O -0.58 -22.34 15.08 -3.05 -0.05 -22.38 16 8 C -0.07 -1.85 2.88 -11.54 -0.03 -1.88 16 9 H 0.11 2.42 7.90 -2.38 -0.02 2.40 16 10 C -0.14 -3.46 9.07 71.98 0.65 -2.80 16 11 C -0.15 -3.51 4.72 -10.79 -0.05 -3.56 16 12 C -0.16 -2.82 10.18 30.60 0.31 -2.51 16 13 C -0.17 -3.96 8.97 30.59 0.27 -3.68 16 14 N -0.73 -33.99 4.56 -322.93 -1.47 -35.46 16 15 C -0.24 -12.19 9.93 84.04 0.83 -11.36 16 16 H 0.08 3.80 7.83 -2.91 -0.02 3.77 16 17 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 18 N -0.97 -56.56 13.06 21.65 0.28 -56.28 16 19 Si 0.97 44.20 29.55 68.60 2.03 46.23 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.72 8.14 -2.38 -0.02 1.71 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 28 H 0.41 13.76 7.56 -92.71 -0.70 13.06 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.58 7.57 -2.39 -0.02 1.56 16 31 H 0.05 1.32 8.14 -2.38 -0.02 1.31 16 32 H 0.10 2.46 8.11 -2.39 -0.02 2.44 16 33 H 0.10 1.63 8.05 -2.39 -0.02 1.61 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.08 2.02 8.10 -2.39 -0.02 2.00 16 37 H 0.37 19.17 7.80 -92.71 -0.72 18.45 16 38 H 0.25 14.36 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -61.96 317.48 2.30 -59.66 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: -0.39 Total: 40.02 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 4.34 Total: -5.61 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -3.64 Total: -117.91 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.05 Total: -22.38 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -61.96 2.30 -59.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266930210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.666 kcal (2) G-P(sol) polarization free energy of solvation -61.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds