Wall clock time and date at job start Mon Mar 30 2020 17:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47730 * 2 1 4 4 C 1.53003 * 109.47060 * 120.00498 * 2 1 3 5 5 N 1.46503 * 109.46980 * 174.99899 * 4 2 1 6 6 C 1.46500 * 120.00106 * 89.99779 * 5 4 2 7 7 C 1.36938 * 119.99707 * 269.99510 * 5 4 2 8 8 H 1.08002 * 119.99822 * 22.01468 * 7 5 4 9 9 C 1.38810 * 119.99874 * 202.00913 * 7 5 4 10 10 N 1.31619 * 120.00210 * 14.21760 * 9 7 5 11 11 Si 1.86807 * 120.00113 * 194.22345 * 9 7 5 12 12 H 1.48501 * 109.46968 * 89.99823 * 11 9 7 13 13 H 1.48493 * 109.47025 * 209.99895 * 11 9 7 14 14 H 1.48498 * 109.46904 * 330.00064 * 11 9 7 15 15 N 1.46499 * 109.47201 * 240.00177 * 2 1 3 16 16 C 1.34778 * 120.00109 * 84.99748 * 15 2 1 17 17 O 1.21282 * 120.00070 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00226 * 179.73001 * 16 15 2 19 19 C 1.53004 * 115.54912 * 34.68834 * 18 16 15 20 20 C 1.53010 * 117.49721 * 249.02770 * 18 16 15 21 21 C 1.52996 * 117.50114 * 180.36643 * 18 16 15 22 22 H 1.09004 * 109.47368 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46699 * 299.99927 * 1 2 3 24 24 H 1.09003 * 109.47107 * 59.99571 * 1 2 3 25 25 H 1.09003 * 109.46932 * 294.99724 * 4 2 1 26 26 H 1.08995 * 109.47025 * 54.99833 * 4 2 1 27 27 H 1.09003 * 109.47220 * 95.14150 * 6 5 4 28 28 H 1.08996 * 109.46967 * 215.14336 * 6 5 4 29 29 H 1.08994 * 109.47168 * 335.14314 * 6 5 4 30 30 H 0.96998 * 120.00178 * 179.97438 * 10 9 7 31 31 H 0.97006 * 120.00558 * 265.00723 * 15 2 1 32 32 H 1.08998 * 109.46331 * 85.58982 * 19 18 16 33 33 H 1.09000 * 109.46726 * 205.58321 * 19 18 16 34 34 H 1.08999 * 109.47216 * 325.58532 * 19 18 16 35 35 H 1.08998 * 117.49351 * 359.97438 * 20 18 16 36 36 H 1.08990 * 117.49694 * 145.01588 * 20 18 16 37 37 H 1.09001 * 117.49865 * 214.97697 * 21 18 16 38 38 H 1.09006 * 117.49512 * 359.97438 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.3344 0.2339 1.7612 7 6 4.0849 -1.9160 0.6022 8 1 3.5310 -2.5057 -0.1133 9 6 5.3896 -2.2625 0.9254 10 7 5.9684 -1.7336 1.9826 11 14 6.3242 -3.4794 -0.1402 12 1 7.0472 -2.7466 -1.2106 13 1 7.2999 -4.2227 0.6968 14 1 5.3684 -4.4359 -0.7539 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8590 1.1587 -2.4115 18 6 2.6551 -0.7271 -3.5862 19 6 2.2368 -2.1924 -3.7231 20 6 4.0406 -0.3365 -4.1049 21 6 2.7869 0.0931 -4.8710 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.7516 -0.1584 2.1370 26 1 1.6053 -1.7199 1.2950 27 1 4.6182 -0.0351 2.7787 28 1 5.2313 0.3568 1.1542 29 1 3.7743 1.1688 1.7754 30 1 6.8800 -1.9759 2.2086 31 1 2.2490 -1.6318 -1.1528 32 1 1.2585 -2.2478 -4.2003 33 1 2.9685 -2.7237 -4.3317 34 1 2.1856 -2.6495 -2.7349 35 1 4.5843 0.4334 -3.5574 36 1 4.6538 -1.1233 -4.5440 37 1 2.5759 -0.4114 -5.8139 38 1 2.5056 1.1453 -4.8275 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268729890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:26 Heat of formation + Delta-G solvation = 3.844319 kcal Electronic energy + Delta-G solvation = -18323.160001 eV Core-core repulsion = 15588.105445 eV Total energy + Delta-G solvation = -2735.054556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.72676 -37.03020 -35.83326 -34.01197 -31.42879 -30.19961 -28.26297 -26.19203 -25.61584 -23.53155 -22.28148 -21.54950 -19.96776 -19.08886 -16.92171 -16.35499 -15.70509 -15.06045 -14.61406 -14.32072 -13.75783 -13.68154 -13.09286 -12.96522 -12.84603 -12.35603 -12.27892 -12.00644 -11.86244 -11.59982 -11.30675 -11.05571 -10.86390 -10.84665 -10.42336 -10.34775 -10.30654 -9.99853 -9.89169 -9.79114 -9.21434 -8.57412 -8.37292 -6.76657 -5.74849 -3.20853 3.01667 3.34174 3.39505 3.42208 3.70044 4.11232 4.45669 4.82937 5.00838 5.06617 5.20165 5.33751 5.47230 5.61277 5.72918 5.79583 5.81984 5.86628 5.94771 5.95885 6.06574 6.15721 6.22504 6.26914 6.31511 6.48171 6.48971 6.76499 6.84201 7.18654 7.37776 7.66931 7.75949 8.19931 8.35146 8.83874 9.19663 9.83636 10.33634 11.29495 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.010344 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.304492 B = 2706.158928 C = 3680.511117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.163 3.837 7 C -0.249 4.249 8 H 0.064 0.936 9 C 0.003 3.997 10 N -0.904 5.904 11 Si 0.899 3.101 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.279 1.279 15 N -0.690 5.690 16 C 0.549 3.451 17 O -0.561 6.561 18 C -0.162 4.162 19 C -0.113 4.113 20 C -0.147 4.147 21 C -0.150 4.150 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.039 0.961 29 H -0.003 1.003 30 H 0.252 0.748 31 H 0.403 0.597 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 0.045 -8.557 11.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.094 0.906 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.379 4.379 8 H 0.082 0.918 9 C -0.195 4.195 10 N -0.548 5.548 11 Si 0.729 3.271 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.204 1.204 15 N -0.341 5.341 16 C 0.335 3.665 17 O -0.441 6.441 18 C -0.166 4.166 19 C -0.170 4.170 20 C -0.184 4.184 21 C -0.187 4.187 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.016 0.984 30 H 0.063 0.937 31 H 0.240 0.760 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.427 0.829 -8.454 11.283 hybrid contribution 0.825 -1.123 -0.464 1.469 sum -6.602 -0.294 -8.918 11.100 Atomic orbital electron populations 1.22123 0.96574 1.01402 1.01608 1.21878 0.92202 0.98283 0.86771 0.90600 1.21061 0.86114 0.98235 0.93291 1.43826 0.98873 1.21100 1.68287 1.20775 0.92850 0.86256 0.98252 1.18990 0.96799 1.04992 1.17127 0.91831 1.24974 0.98791 0.98980 0.96790 1.70070 1.13658 1.46356 1.24753 0.86344 0.80056 0.80777 0.79935 1.21449 1.21807 1.20431 1.45901 1.65125 1.14474 1.08579 1.19338 0.77002 0.86363 0.83785 1.90613 1.51966 1.16099 1.85419 1.21476 1.03200 0.96895 0.94981 1.21335 1.01318 0.91777 1.02602 1.23052 0.89547 1.03463 1.02347 1.22987 1.01327 1.00924 0.93495 0.92899 0.92112 0.92935 0.93007 0.93022 0.95094 0.94173 0.98432 0.93748 0.75959 0.91990 0.91731 0.91629 0.88277 0.88098 0.88472 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 37.16 0.35 -2.02 16 2 C 0.12 2.13 2.88 -67.93 -0.20 1.93 16 3 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 4 C 0.14 2.78 5.30 -4.04 -0.02 2.76 16 5 N -0.60 -14.50 2.82 -181.12 -0.51 -15.01 16 6 C 0.16 4.05 8.98 59.85 0.54 4.59 16 7 C -0.25 -6.43 8.85 -15.06 -0.13 -6.56 16 8 H 0.06 1.55 6.23 -52.49 -0.33 1.22 16 9 C 0.00 0.09 5.08 -17.43 -0.09 0.00 16 10 N -0.90 -25.94 10.72 55.49 0.59 -25.34 16 11 Si 0.90 21.16 29.58 -169.99 -5.03 16.13 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 N -0.69 -12.73 4.39 -53.81 -0.24 -12.96 16 16 C 0.55 10.36 7.35 -10.98 -0.08 10.28 16 17 O -0.56 -12.17 15.92 5.56 0.09 -12.08 16 18 C -0.16 -2.51 2.61 -155.65 -0.41 -2.92 16 19 C -0.11 -1.45 9.79 37.16 0.36 -1.08 16 20 C -0.15 -2.15 9.88 -26.69 -0.26 -2.42 16 21 C -0.15 -2.03 9.77 -26.69 -0.26 -2.29 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 26 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 27 H 0.03 0.82 7.36 -51.93 -0.38 0.44 16 28 H 0.04 1.08 7.31 -51.93 -0.38 0.70 16 29 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.40 7.30 4.81 -40.82 -0.20 7.11 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.73 7.90 -51.93 -0.41 0.32 16 34 H 0.06 0.87 6.39 -51.93 -0.33 0.54 16 35 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.53 7.67 -51.93 -0.40 1.13 16 LS Contribution 309.31 15.07 4.66 4.66 Total: -1.00 -30.40 309.31 -6.79 -37.19 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.16 Total: 5.15 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.20 Total: 2.27 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.15 Total: -53.31 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.40 -6.79 -37.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268729890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.029 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds