Wall clock time and date at job start Mon Mar 30 2020 17:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47090 * 2 1 4 4 C 1.53000 * 109.47517 * 119.99461 * 2 1 3 5 5 N 1.46506 * 109.47108 * 295.00670 * 4 2 1 6 6 C 1.36935 * 119.99911 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00151 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99846 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00275 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99892 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46902 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46906 * 119.99957 * 10 8 6 13 13 H 1.48496 * 109.47341 * 240.00072 * 10 8 6 14 14 C 1.52997 * 109.47260 * 239.99743 * 2 1 3 15 15 N 1.46496 * 109.47194 * 64.99617 * 14 2 1 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 2 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 C 1.53003 * 117.49371 * 243.62054 * 19 18 16 21 21 C 1.53001 * 117.49608 * 175.00128 * 19 18 16 22 22 H 1.09004 * 109.47094 * 300.00305 * 1 2 3 23 23 H 1.09001 * 109.47254 * 60.00390 * 1 2 3 24 24 H 1.09000 * 109.47102 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46604 * 54.99696 * 4 2 1 26 26 H 1.08993 * 109.47585 * 175.00310 * 4 2 1 27 27 H 0.96999 * 119.99735 * 359.97438 * 5 4 2 28 28 H 0.97001 * 119.99955 * 179.97438 * 9 8 6 29 29 H 1.09002 * 109.47045 * 304.99744 * 14 2 1 30 30 H 1.09001 * 109.47375 * 184.99669 * 14 2 1 31 31 H 0.97005 * 120.00266 * 0.02562 * 15 14 2 32 32 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 33 33 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 34 34 H 1.08995 * 115.55630 * 29.32739 * 19 18 16 35 35 H 1.08998 * 117.50656 * 0.02562 * 20 19 18 36 36 H 1.09001 * 117.49674 * 145.02590 * 20 19 18 37 37 H 1.09003 * 117.49710 * 214.97494 * 21 19 18 38 38 H 1.08998 * 117.50185 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6524 0.0355 2.4424 6 6 2.0011 -0.4205 3.6856 7 1 2.5616 -1.3382 3.7866 8 6 1.6343 0.2967 4.8160 9 7 0.9508 1.4148 4.6931 10 14 2.1093 -0.3258 6.5121 11 1 2.8685 -1.5951 6.3787 12 1 2.9555 0.6874 7.1921 13 1 0.8821 -0.5644 7.3135 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0352 -2.4423 16 6 1.9964 -0.4133 -3.6659 17 8 2.6265 -1.4433 -3.7791 18 6 1.5982 0.3652 -4.8932 19 6 2.1081 -0.3562 -6.1424 20 6 3.1426 0.3701 -7.0046 21 6 1.7042 0.2158 -7.5028 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -1.7196 1.2953 26 1 3.1264 -0.7993 1.2057 27 1 1.1488 0.8595 2.3517 28 1 0.6942 1.9157 5.4830 29 1 1.6054 -1.7199 -1.2950 30 1 3.1264 -0.7995 -1.2056 31 1 1.1488 0.8593 -2.3518 32 1 2.0328 1.3638 -4.8470 33 1 0.5119 0.4435 -4.9372 34 1 2.1945 -1.4393 -6.0575 35 1 3.4603 1.3615 -6.6818 36 1 3.9099 -0.2354 -7.4871 37 1 1.5253 -0.4911 -8.3129 38 1 1.0749 1.1058 -7.5079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270340043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:37 Heat of formation + Delta-G solvation = -21.017614 kcal Electronic energy + Delta-G solvation = -16628.659007 eV Core-core repulsion = 13892.526357 eV Total energy + Delta-G solvation = -2736.132650 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.86614 -37.52026 -36.61735 -34.34037 -32.52730 -30.37486 -29.44532 -26.38644 -25.16379 -22.65636 -22.56305 -21.20820 -20.37698 -19.69821 -17.50335 -16.83448 -16.20581 -15.63457 -15.40437 -14.52340 -14.45969 -14.29368 -13.61241 -13.59544 -13.03772 -12.94621 -12.49118 -12.20112 -12.03316 -11.77580 -11.68614 -11.06634 -10.92150 -10.71888 -10.62301 -10.55991 -10.41746 -10.27375 -10.04390 -9.81018 -9.64806 -9.00732 -8.88509 -6.92603 -5.77624 -3.05914 2.63936 3.14637 3.43345 3.49310 3.51413 3.58392 4.43120 4.54728 4.59416 4.66757 4.87989 5.05718 5.18724 5.22351 5.31515 5.36654 5.38850 5.42547 5.57655 5.63675 5.82013 5.84479 5.96876 6.00246 6.06400 6.12096 6.25069 6.39251 6.51001 6.65006 6.77346 6.86827 7.51013 7.70769 8.22883 8.41617 9.52969 10.10252 10.45111 11.45511 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.074113 B = 0.003299 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.712148 B = 8486.610923 C = 8636.118159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.727 5.727 16 C 0.512 3.488 17 O -0.543 6.543 18 C -0.112 4.112 19 C -0.140 4.140 20 C -0.179 4.179 21 C -0.182 4.182 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.022 0.978 26 H 0.021 0.979 27 H 0.384 0.616 28 H 0.254 0.746 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.400 0.600 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 0.333 -21.404 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.379 5.379 16 C 0.298 3.702 17 O -0.420 6.420 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.216 4.216 21 C -0.219 4.219 22 H 0.088 0.912 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.218 0.782 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.235 0.765 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.136 0.864 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.101 -0.531 -21.335 21.342 hybrid contribution -0.178 0.455 1.064 1.171 sum -0.279 -0.076 -20.271 20.273 Atomic orbital electron populations 1.21789 0.94676 1.01925 1.01462 1.21552 0.96705 1.00479 0.94233 0.90568 1.20578 0.96610 0.94213 0.85392 1.42353 1.66941 1.27671 1.00611 1.19290 1.28564 1.05372 0.83650 0.91094 1.24739 1.01065 0.97418 0.97878 1.69665 1.43677 1.16645 1.28374 0.86107 0.77591 0.77847 0.84607 1.20533 1.21879 1.21870 1.21405 1.00081 0.95272 0.83007 1.46098 1.57802 1.27934 1.06036 1.20552 0.79299 0.85754 0.84617 1.90688 1.39892 1.24707 1.86692 1.21231 1.02757 0.99488 0.91666 1.22057 1.03518 1.00439 0.89787 1.23034 0.92543 1.01889 1.04131 1.23001 0.98276 1.03252 0.97360 0.91173 0.93902 0.92838 0.95999 0.96132 0.78218 0.93582 0.91422 0.91444 0.76545 0.88833 0.88510 0.86392 0.88828 0.88784 0.88734 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.94 37.16 0.33 -1.74 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.20 5.65 -4.04 -0.02 3.17 16 5 N -0.73 -18.37 5.33 -59.91 -0.32 -18.69 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 10 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 14 C 0.13 1.75 5.06 -4.05 -0.02 1.73 16 15 N -0.73 -8.34 5.28 -60.30 -0.32 -8.66 16 16 C 0.51 6.32 7.83 -10.98 -0.09 6.24 16 17 O -0.54 -8.95 15.56 5.56 0.09 -8.86 16 18 C -0.11 -0.95 5.98 -27.88 -0.17 -1.12 16 19 C -0.14 -1.30 5.41 -90.62 -0.49 -1.79 16 20 C -0.18 -1.45 10.18 -26.73 -0.27 -1.72 16 21 C -0.18 -1.31 10.25 -26.73 -0.27 -1.59 16 22 H 0.07 1.21 7.18 -51.93 -0.37 0.83 16 23 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.38 10.00 6.85 -40.82 -0.28 9.72 16 28 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.40 3.60 7.66 -40.82 -0.31 3.29 16 32 H 0.09 0.64 7.88 -51.93 -0.41 0.24 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.12 1.33 7.31 -51.93 -0.38 0.95 16 35 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 317.01 15.07 4.78 4.78 Total: -1.00 -32.48 317.01 -7.86 -40.34 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.32 Total: 7.16 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.47 Total: -6.10 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.09 Total: -54.79 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.48 -7.86 -40.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270340043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.325 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds