Wall clock time and date at job start Mon Mar 30 2020 17:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47090 * 2 1 4 4 C 1.53000 * 109.47517 * 119.99461 * 2 1 3 5 5 N 1.46506 * 109.47108 * 295.00670 * 4 2 1 6 6 C 1.36935 * 119.99911 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00151 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99846 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00275 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99892 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46902 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46906 * 119.99957 * 10 8 6 13 13 H 1.48496 * 109.47341 * 240.00072 * 10 8 6 14 14 C 1.52997 * 109.47260 * 239.99743 * 2 1 3 15 15 N 1.46496 * 109.47194 * 64.99617 * 14 2 1 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 2 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 C 1.53003 * 117.49371 * 243.62054 * 19 18 16 21 21 C 1.53001 * 117.49608 * 175.00128 * 19 18 16 22 22 H 1.09004 * 109.47094 * 300.00305 * 1 2 3 23 23 H 1.09001 * 109.47254 * 60.00390 * 1 2 3 24 24 H 1.09000 * 109.47102 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46604 * 54.99696 * 4 2 1 26 26 H 1.08993 * 109.47585 * 175.00310 * 4 2 1 27 27 H 0.96999 * 119.99735 * 359.97438 * 5 4 2 28 28 H 0.97001 * 119.99955 * 179.97438 * 9 8 6 29 29 H 1.09002 * 109.47045 * 304.99744 * 14 2 1 30 30 H 1.09001 * 109.47375 * 184.99669 * 14 2 1 31 31 H 0.97005 * 120.00266 * 0.02562 * 15 14 2 32 32 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 33 33 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 34 34 H 1.08995 * 115.55630 * 29.32739 * 19 18 16 35 35 H 1.08998 * 117.50656 * 0.02562 * 20 19 18 36 36 H 1.09001 * 117.49674 * 145.02590 * 20 19 18 37 37 H 1.09003 * 117.49710 * 214.97494 * 21 19 18 38 38 H 1.08998 * 117.50185 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6524 0.0355 2.4424 6 6 2.0011 -0.4205 3.6856 7 1 2.5616 -1.3382 3.7866 8 6 1.6343 0.2967 4.8160 9 7 0.9508 1.4148 4.6931 10 14 2.1093 -0.3258 6.5121 11 1 2.8685 -1.5951 6.3787 12 1 2.9555 0.6874 7.1921 13 1 0.8821 -0.5644 7.3135 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0352 -2.4423 16 6 1.9964 -0.4133 -3.6659 17 8 2.6265 -1.4433 -3.7791 18 6 1.5982 0.3652 -4.8932 19 6 2.1081 -0.3562 -6.1424 20 6 3.1426 0.3701 -7.0046 21 6 1.7042 0.2158 -7.5028 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -1.7196 1.2953 26 1 3.1264 -0.7993 1.2057 27 1 1.1488 0.8595 2.3517 28 1 0.6942 1.9157 5.4830 29 1 1.6054 -1.7199 -1.2950 30 1 3.1264 -0.7995 -1.2056 31 1 1.1488 0.8593 -2.3518 32 1 2.0328 1.3638 -4.8470 33 1 0.5119 0.4435 -4.9372 34 1 2.1945 -1.4393 -6.0575 35 1 3.4603 1.3615 -6.6818 36 1 3.9099 -0.2354 -7.4871 37 1 1.5253 -0.4911 -8.3129 38 1 1.0749 1.1058 -7.5079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270340043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:36 Heat of formation + Delta-G solvation = -42.779104 kcal Electronic energy + Delta-G solvation = -16629.602656 eV Core-core repulsion = 13892.526357 eV Total energy + Delta-G solvation = -2737.076299 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.85810 -38.48946 -37.74464 -35.93422 -34.11317 -32.04716 -30.42828 -27.69601 -26.82672 -24.36653 -23.20150 -22.12265 -21.50686 -20.78813 -19.22853 -18.08982 -17.30693 -16.67510 -16.58325 -16.14614 -15.61457 -15.47833 -15.02279 -14.90720 -14.31811 -14.25901 -13.75519 -13.57510 -13.23555 -12.96155 -12.82815 -12.37934 -12.29969 -12.18163 -12.13040 -11.99593 -11.70992 -11.66111 -11.28592 -10.97108 -10.95540 -10.72786 -10.06452 -9.00348 -7.96474 -5.24749 1.47570 1.47837 1.58193 1.69076 2.20337 2.56270 2.95849 3.37385 3.72974 3.78977 3.80003 3.96150 4.07438 4.09109 4.20576 4.34048 4.54561 4.57887 4.67970 4.70051 4.78886 4.82933 4.84209 4.93844 5.04972 5.07736 5.12519 5.29391 5.32787 5.37348 5.44239 5.49444 5.51786 6.26613 6.60586 7.30198 7.33390 8.08188 8.32880 9.27213 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.074113 B = 0.003299 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.712148 B = 8486.610923 C = 8636.118159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.079 0.921 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.973 3.027 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.138 3.862 15 N -0.716 5.716 16 C 0.508 3.492 17 O -0.590 6.590 18 C -0.101 4.101 19 C -0.161 4.161 20 C -0.186 4.186 21 C -0.163 4.163 22 H 0.042 0.958 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.377 0.623 28 H 0.252 0.748 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.416 0.584 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 0.989 -22.578 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.098 0.902 4 C 0.029 3.971 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.013 3.987 15 N -0.369 5.369 16 C 0.296 3.704 17 O -0.471 6.471 18 C -0.140 4.140 19 C -0.180 4.180 20 C -0.222 4.222 21 C -0.200 4.200 22 H 0.061 0.939 23 H 0.097 0.903 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.210 0.790 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.253 0.747 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.500 0.127 -22.537 22.543 hybrid contribution -0.030 0.206 1.361 1.377 sum -0.530 0.333 -21.176 21.186 Atomic orbital electron populations 1.21725 0.93785 1.01880 1.01850 1.21330 0.97228 1.00038 0.92689 0.90242 1.20731 0.96460 0.94140 0.85776 1.42517 1.66812 1.27813 1.01339 1.19660 1.27836 1.05246 0.85076 0.90927 1.25543 1.01696 0.97898 1.01511 1.69805 1.45097 1.17864 1.29080 0.85083 0.77124 0.77605 0.80003 1.19292 1.21912 1.21888 1.21089 0.99272 0.95042 0.83317 1.45959 1.57621 1.28176 1.05132 1.21292 0.78183 0.85300 0.85583 1.90675 1.42076 1.26976 1.87337 1.21260 1.04389 0.99496 0.88876 1.22002 1.05454 0.99195 0.91357 1.23133 0.93040 1.02119 1.03953 1.23087 0.97599 1.03544 0.95785 0.93910 0.90301 0.93112 0.96203 0.96387 0.79035 0.93917 0.92145 0.92547 0.74721 0.86460 0.85947 0.89242 0.87755 0.89288 0.88341 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.94 71.98 0.64 -3.13 16 2 C -0.09 -2.79 2.46 -10.79 -0.03 -2.82 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.16 6.21 5.65 86.38 0.49 6.70 16 5 N -0.74 -37.49 5.33 -343.44 -1.83 -39.32 16 6 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 7 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 8 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 9 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 10 Si 0.97 46.30 29.55 68.60 2.03 48.32 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 14 C 0.14 3.68 5.06 86.38 0.44 4.12 16 15 N -0.72 -14.95 5.28 -463.07 -2.45 -17.40 16 16 C 0.51 11.80 7.83 87.66 0.69 12.49 16 17 O -0.59 -19.49 15.56 -3.02 -0.05 -19.53 16 18 C -0.10 -1.44 5.98 29.85 0.18 -1.27 16 19 C -0.16 -2.77 5.41 -10.79 -0.06 -2.83 16 20 C -0.19 -2.70 10.18 30.60 0.31 -2.39 16 21 C -0.16 -1.95 10.25 30.60 0.31 -1.63 16 22 H 0.04 1.44 7.18 -2.38 -0.02 1.43 16 23 H 0.08 1.62 7.18 -2.39 -0.02 1.60 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.38 19.88 6.85 -92.71 -0.64 19.24 16 28 H 0.25 14.78 8.31 -92.71 -0.77 14.00 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.42 6.14 7.66 -92.70 -0.71 5.43 16 32 H 0.12 1.16 7.88 -2.39 -0.02 1.15 16 33 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 2.06 7.31 -2.39 -0.02 2.04 16 35 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -70.50 317.01 1.96 -68.54 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.30 Total: 25.53 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 4.28 Total: -7.59 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -3.99 Total: -115.26 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.53 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -70.50 1.96 -68.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270340043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.758 kcal (2) G-P(sol) polarization free energy of solvation -70.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds