Wall clock time and date at job start Mon Mar 30 2020 17:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.47123 * 2 1 4 4 C 1.50703 * 109.47324 * 119.99496 * 2 1 3 5 5 H 1.07999 * 120.00125 * 119.99778 * 4 2 1 6 6 C 1.37882 * 120.00109 * 300.00977 * 4 2 1 7 7 N 1.31518 * 119.99816 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99922 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46957 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46987 * 119.99500 * 8 6 4 11 11 H 1.48497 * 109.46763 * 239.99501 * 8 6 4 12 12 C 1.50698 * 109.47547 * 239.99868 * 2 1 3 13 13 O 1.21283 * 120.00229 * 239.99975 * 12 2 1 14 14 N 1.34778 * 119.99903 * 59.99681 * 12 2 1 15 15 C 1.46496 * 119.99978 * 174.80856 * 14 12 2 16 16 C 1.52999 * 110.43779 * 301.95302 * 15 14 12 17 17 N 1.46901 * 109.47103 * 307.80874 * 16 15 14 18 18 C 1.54895 * 110.48596 * 179.26974 * 15 14 12 19 19 C 1.54891 * 102.74748 * 279.26650 * 18 15 14 20 20 C 1.54266 * 104.19591 * 322.05647 * 19 18 15 21 21 C 1.53879 * 106.59973 * 23.61368 * 20 19 18 22 22 H 1.09000 * 109.46975 * 300.00210 * 1 2 3 23 23 H 1.09004 * 109.46695 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46700 * 60.00375 * 1 2 3 25 25 H 0.96994 * 119.99703 * 180.02562 * 7 6 4 26 26 H 0.97001 * 119.99787 * 354.81370 * 14 12 2 27 27 H 1.09000 * 109.46815 * 67.80728 * 16 15 14 28 28 H 1.09000 * 109.47195 * 187.81033 * 16 15 14 29 29 H 1.00898 * 110.99999 * 174.83651 * 17 16 15 30 30 H 1.00897 * 111.00336 * 298.79314 * 17 16 15 31 31 H 1.09001 * 110.75414 * 37.57833 * 18 15 14 32 32 H 1.08997 * 110.75525 * 160.94775 * 18 15 14 33 33 H 1.09003 * 110.48350 * 203.38154 * 19 18 15 34 34 H 1.09000 * 110.48851 * 80.73363 * 19 18 15 35 35 H 1.09005 * 110.03346 * 264.32637 * 20 19 18 36 36 H 1.09001 * 110.03642 * 142.89397 * 20 19 18 37 37 H 1.09005 * 110.03131 * 240.71761 * 21 20 19 38 38 H 1.08994 * 110.03433 * 119.28228 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3214 -1.1202 4.0081 9 1 3.1456 -2.2874 3.6039 10 1 3.1465 -0.1871 4.8165 11 1 1.1661 -1.5865 4.8161 12 6 2.0325 -0.7104 -1.2304 13 8 2.7298 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.2863 -0.8704 -3.6485 16 6 3.8138 -0.8004 -3.5991 17 7 4.2326 0.5854 -3.3496 18 6 1.7505 -0.1848 -4.9299 19 6 0.3662 -0.8529 -5.1217 20 6 0.5960 -2.3230 -4.7148 21 6 1.8168 -2.3342 -3.7780 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 -0.8900 25 1 0.7092 1.1618 3.4843 26 1 1.0889 0.4922 -2.5450 27 1 4.1812 -1.4409 -2.7973 28 1 4.2240 -1.1381 -4.5508 29 1 5.2326 0.6447 -3.2288 30 1 3.9209 1.1962 -4.0896 31 1 1.6433 0.8891 -4.7774 32 1 2.4007 -0.3924 -5.7797 33 1 0.0535 -0.7900 -6.1640 34 1 -0.3749 -0.3884 -4.4712 35 1 0.7981 -2.9280 -5.5987 36 1 -0.2796 -2.7069 -4.1914 37 1 2.6114 -2.9445 -4.2074 38 1 1.5335 -2.7234 -2.8001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339857859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:52 Heat of formation + Delta-G solvation = -78.560132 kcal Electronic energy + Delta-G solvation = -18354.867048 eV Core-core repulsion = 15616.239167 eV Total energy + Delta-G solvation = -2738.627881 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.15975 -38.72332 -35.68864 -35.04756 -33.92059 -32.16757 -29.72617 -28.99074 -27.16084 -24.74292 -24.33875 -21.60018 -21.20282 -19.98350 -18.25088 -17.77572 -17.06430 -16.80745 -16.42083 -15.92047 -15.47518 -15.22134 -15.10809 -14.42403 -14.16544 -14.02440 -13.66884 -13.41167 -12.94468 -12.67005 -12.53729 -12.48800 -12.27944 -12.12641 -12.05200 -11.97433 -11.90945 -11.55511 -11.29239 -10.97824 -10.52850 -10.04055 -9.68187 -9.43987 -8.11897 -6.21358 1.38678 1.39999 1.54003 2.19084 2.41300 2.67184 3.17244 3.49639 3.69572 3.82535 4.03368 4.31523 4.37908 4.55023 4.62255 4.66162 4.74310 4.79022 4.82645 4.94682 4.99370 5.01203 5.05933 5.12453 5.13954 5.31875 5.34883 5.52636 5.56571 5.77378 5.94841 6.02334 6.28257 6.32109 6.70809 6.84190 7.04628 7.45130 7.80537 8.94254 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033410 B = 0.006722 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.869190 B = 4164.594525 C = 4357.084323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.024 3.976 3 H 0.032 0.968 4 C -0.522 4.522 5 H 0.046 0.954 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.534 3.466 13 O -0.585 6.585 14 N -0.699 5.699 15 C 0.170 3.830 16 C 0.061 3.939 17 N -0.850 5.850 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.131 4.131 22 H 0.067 0.933 23 H 0.020 0.980 24 H 0.049 0.951 25 H 0.263 0.737 26 H 0.401 0.599 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.344 0.656 30 H 0.347 0.653 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 0.244 -18.049 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.003 3.997 3 H 0.050 0.950 4 C -0.560 4.560 5 H 0.064 0.936 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.199 1.199 12 C 0.323 3.677 13 O -0.465 6.465 14 N -0.350 5.350 15 C 0.083 3.917 16 C -0.071 4.071 17 N -0.381 5.381 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.170 4.170 22 H 0.086 0.914 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.236 0.764 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.308 -0.390 -17.192 17.199 hybrid contribution 0.719 -0.319 0.473 0.918 sum 0.411 -0.709 -16.719 16.739 Atomic orbital electron populations 1.21530 0.95536 0.99063 1.01416 1.18762 0.94950 0.95642 0.90393 0.94991 1.21337 1.31027 1.12410 0.91275 0.93567 1.25608 0.95356 0.95812 1.01412 1.69970 1.37580 1.23728 1.24042 0.85570 0.78339 0.78569 0.79557 1.20569 1.19980 1.19890 1.21090 0.78100 0.83243 0.85268 1.90449 1.40267 1.28248 1.87514 1.45710 1.48134 1.36914 1.04278 1.21241 0.91827 0.92779 0.85826 1.22018 0.95133 0.90601 0.99355 1.58387 1.19425 1.07690 1.52626 1.22769 0.97305 1.00239 0.94907 1.22358 0.96645 0.94292 1.02325 1.22110 0.96597 0.98156 0.98762 1.22474 0.98758 0.96341 0.99406 0.91375 0.96118 0.93228 0.92754 0.76357 0.93485 0.93112 0.84263 0.83884 0.89686 0.88455 0.89109 0.91997 0.90120 0.92927 0.91246 0.94433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.86 71.98 0.64 -4.95 16 2 C 0.02 1.25 2.65 -12.28 -0.03 1.22 16 3 H 0.03 1.79 8.14 -2.38 -0.02 1.77 16 4 C -0.52 -31.47 8.37 25.60 0.21 -31.25 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.91 -53.09 11.32 21.45 0.24 -52.85 16 8 Si 0.95 46.50 29.54 68.60 2.03 48.52 16 9 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 C 0.53 25.17 6.39 87.66 0.56 25.73 16 13 O -0.58 -31.46 12.41 -3.04 -0.04 -31.50 16 14 N -0.70 -24.34 4.73 -418.07 -1.98 -26.32 16 15 C 0.17 4.78 0.53 4.68 0.00 4.78 16 16 C 0.06 1.77 5.31 86.30 0.46 2.23 16 17 N -0.85 -22.70 9.29 -186.72 -1.74 -24.43 16 18 C -0.11 -2.10 5.29 31.89 0.17 -1.93 16 19 C -0.12 -2.12 6.79 31.67 0.22 -1.90 16 20 C -0.12 -2.60 6.80 31.32 0.21 -2.39 16 21 C -0.13 -3.85 5.67 31.32 0.18 -3.67 16 22 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 23 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.05 1.91 7.46 -2.39 -0.02 1.89 16 25 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 26 H 0.40 12.34 7.77 -92.71 -0.72 11.62 16 27 H 0.05 1.82 6.54 -2.39 -0.02 1.80 16 28 H 0.05 1.18 8.02 -2.39 -0.02 1.16 16 29 H 0.34 8.39 9.08 -89.70 -0.81 7.58 16 30 H 0.35 7.13 8.50 -89.70 -0.76 6.36 16 31 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.10 1.40 7.97 -2.39 -0.02 1.38 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.91 7.84 -2.38 -0.02 1.89 16 38 H 0.04 1.45 6.54 -2.39 -0.02 1.43 16 Total: -1.00 -70.72 298.36 0.36 -70.36 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -1.22 Total: 26.94 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 3.06 Total: -10.72 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -3.47 Total: -103.60 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.04 Total: -31.50 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -70.72 0.36 -70.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339857859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.204 kcal (2) G-P(sol) polarization free energy of solvation -70.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds