Wall clock time and date at job start Mon Mar 30 2020 17:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99834 * 2 1 4 4 C 1.53009 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.88488 * 57.43026 * 4 3 2 6 6 C 1.55159 * 111.00127 * 293.54719 * 4 3 2 7 7 C 1.54324 * 102.93743 * 206.38735 * 6 4 3 8 8 N 1.47023 * 107.27638 * 22.19130 * 7 6 4 9 9 C 1.34773 * 125.64835 * 181.02133 * 8 7 6 10 10 O 1.21290 * 119.99736 * 185.51050 * 9 8 7 11 11 C 1.50691 * 120.00262 * 5.51481 * 9 8 7 12 12 H 1.09003 * 109.47524 * 24.16373 * 11 9 8 13 13 C 1.53007 * 109.47419 * 144.16285 * 11 9 8 14 14 C 1.50701 * 109.47364 * 264.16028 * 11 9 8 15 15 H 1.08007 * 119.99579 * 0.02562 * 14 11 9 16 16 C 1.37878 * 120.00232 * 179.97438 * 14 11 9 17 17 N 1.31515 * 120.00096 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99974 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46775 * 90.00668 * 18 16 14 20 20 H 1.48496 * 109.47212 * 210.00450 * 18 16 14 21 21 H 1.48494 * 109.47235 * 330.00792 * 18 16 14 22 22 C 1.47426 * 108.69922 * 1.28807 * 8 7 6 23 23 H 1.09000 * 109.47218 * 59.99748 * 1 2 3 24 24 H 1.09004 * 109.47221 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47409 * 300.00059 * 1 2 3 26 26 H 1.00898 * 110.99767 * 123.95381 * 2 1 3 27 27 H 1.09000 * 109.47632 * 60.00354 * 3 2 1 28 28 H 1.09004 * 109.47389 * 299.99631 * 3 2 1 29 29 H 1.08992 * 110.72022 * 88.02351 * 6 4 3 30 30 H 1.08995 * 110.72205 * 324.74651 * 6 4 3 31 31 H 1.09010 * 109.88138 * 262.77348 * 7 6 4 32 32 H 1.08994 * 109.88363 * 141.61386 * 7 6 4 33 33 H 1.08993 * 109.46993 * 186.20550 * 13 11 9 34 34 H 1.09004 * 109.46871 * 66.20132 * 13 11 9 35 35 H 1.09003 * 109.47027 * 306.20360 * 13 11 9 36 36 H 0.96998 * 120.00409 * 179.97438 * 17 16 14 37 37 H 1.09007 * 110.36396 * 94.48078 * 22 8 7 38 38 H 1.08996 * 110.36651 * 216.80151 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8984 0.7723 -0.8591 6 6 4.0659 0.7370 1.3269 7 6 5.4652 1.3767 1.4465 8 7 5.4578 2.5991 0.6297 9 6 6.5013 3.4341 0.4559 10 8 6.3542 4.4685 -0.1602 11 6 7.8508 3.0826 1.0269 12 1 7.9222 2.0021 1.1521 13 6 8.9481 3.5589 0.0729 14 6 8.0212 3.7556 2.3645 15 1 7.2309 4.3756 2.7615 16 6 9.1853 3.5791 3.0818 17 7 10.1474 2.8238 2.5986 18 14 9.3967 4.4140 4.7394 19 1 8.8932 3.5189 5.8122 20 1 10.8354 4.7013 4.9691 21 1 8.6294 5.6852 4.7548 22 6 4.1178 2.7636 0.0373 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8305 -0.5261 0.7814 27 1 1.6460 1.8948 0.8900 28 1 1.6459 1.8948 -0.8900 29 1 4.1423 -0.3482 1.2613 30 1 3.4349 1.0302 2.1659 31 1 6.2217 0.6861 1.0734 32 1 5.6704 1.6275 2.4872 33 1 9.9168 3.2090 0.4297 34 1 8.9473 4.6483 0.0333 35 1 8.7619 3.1589 -0.9238 36 1 10.9666 2.6998 3.1030 37 1 3.5045 3.4140 0.6612 38 1 4.1961 3.1681 -0.9717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340479567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:56:41 Heat of formation + Delta-G solvation = -45.759848 kcal Electronic energy + Delta-G solvation = -17617.405205 eV Core-core repulsion = 14880.199651 eV Total energy + Delta-G solvation = -2737.205554 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.46613 -37.48823 -35.54819 -33.73537 -31.53450 -30.23592 -29.16270 -26.55041 -25.16468 -23.75096 -22.94039 -21.45892 -20.15517 -18.27573 -16.67297 -16.42006 -16.27487 -15.17624 -14.78145 -14.65965 -14.26537 -13.86026 -13.53599 -13.35306 -12.69339 -12.37451 -12.35131 -12.11650 -11.95550 -11.66119 -11.51903 -10.97594 -10.88190 -10.83032 -10.70695 -10.55346 -10.50119 -10.22044 -10.08723 -9.01133 -8.69597 -8.62677 -8.35647 -7.94377 -6.09221 -4.16033 3.26722 3.33712 3.38367 3.70798 3.74471 4.06611 4.40844 4.61446 4.77955 4.96461 5.10147 5.21568 5.23129 5.33500 5.44272 5.47736 5.62308 5.65799 5.74834 5.86741 5.96719 6.19231 6.22579 6.32634 6.38238 6.73714 6.82088 7.00893 7.01702 7.12365 7.14620 7.58606 7.77422 7.96171 8.18754 8.38856 8.83797 9.23349 9.48915 10.97483 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035163 B = 0.005377 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.095191 B = 5206.461724 C = 5546.865528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.695 5.695 3 C 0.069 3.931 4 C -0.101 4.101 5 H 0.092 0.908 6 C -0.130 4.130 7 C 0.110 3.890 8 N -0.627 5.627 9 C 0.543 3.457 10 O -0.563 6.563 11 C 0.035 3.965 12 H 0.044 0.956 13 C -0.121 4.121 14 C -0.508 4.508 15 H 0.057 0.943 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.112 3.888 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.021 0.979 26 H 0.343 0.657 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.008 0.992 36 H 0.263 0.737 37 H 0.057 0.943 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.485 -7.465 -2.088 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.326 5.326 3 C -0.060 4.060 4 C -0.120 4.120 5 H 0.110 0.890 6 C -0.168 4.168 7 C -0.013 4.013 8 N -0.363 5.363 9 C 0.336 3.664 10 O -0.440 6.440 11 C 0.014 3.986 12 H 0.062 0.938 13 C -0.179 4.179 14 C -0.546 4.546 15 H 0.075 0.925 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.012 4.012 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.160 0.840 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.241 -6.976 -3.071 16.152 hybrid contribution -0.113 0.660 1.896 2.011 sum -14.354 -6.316 -1.175 15.726 Atomic orbital electron populations 1.22188 0.87915 1.01769 1.00397 1.60378 1.07578 1.14437 1.50170 1.21901 0.93851 0.89418 1.00843 1.22432 0.94031 0.96559 0.98994 0.88976 1.22738 0.96425 1.00530 0.97091 1.21881 0.96388 0.86532 0.96540 1.48652 1.10985 1.26104 1.50603 1.21777 0.86021 0.81431 0.77194 1.90536 1.85143 1.24951 1.43416 1.18873 0.85897 0.98337 0.95473 0.93803 1.21602 1.01592 1.00085 0.94643 1.20748 1.02229 1.30362 1.01260 0.92515 1.24899 0.95514 0.95011 0.98127 1.69896 1.06406 1.38092 1.38044 0.86481 0.77414 0.79961 0.83544 1.20561 1.21011 1.19809 1.22068 0.84849 0.95365 0.98953 0.91741 0.91492 0.96082 0.83977 0.94834 0.90720 0.90151 0.91218 0.91452 0.90801 0.89674 0.94138 0.97267 0.92725 0.92476 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.70 60.06 0.64 0.85 16 2 N -0.69 -6.50 6.86 -121.13 -0.83 -7.33 16 3 C 0.07 0.71 5.19 -3.82 -0.02 0.69 16 4 C -0.10 -1.21 3.31 -88.35 -0.29 -1.51 16 5 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 6 C -0.13 -1.52 5.62 -24.90 -0.14 -1.66 16 7 C 0.11 1.79 6.20 -3.06 -0.02 1.77 16 8 N -0.63 -12.31 3.32 -170.38 -0.57 -12.87 16 9 C 0.54 13.25 6.76 -10.99 -0.07 13.17 16 10 O -0.56 -15.24 16.71 5.55 0.09 -15.15 16 11 C 0.04 0.91 2.28 -92.92 -0.21 0.70 16 12 H 0.04 1.13 6.88 -51.93 -0.36 0.78 16 13 C -0.12 -3.13 8.45 37.16 0.31 -2.81 16 14 C -0.51 -14.11 8.54 -34.44 -0.29 -14.41 16 15 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 16 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 17 N -0.89 -24.70 11.39 55.43 0.63 -24.07 16 18 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.11 1.77 6.36 -2.41 -0.02 1.75 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.34 2.89 8.03 -39.29 -0.32 2.57 16 27 H 0.03 0.34 8.11 -51.93 -0.42 -0.08 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 30 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 31 H 0.07 1.10 7.62 -51.92 -0.40 0.70 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 2.28 6.26 -51.93 -0.33 1.96 16 34 H 0.04 1.08 8.05 -51.93 -0.42 0.66 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 37 H 0.06 0.89 8.04 -51.92 -0.42 0.47 16 38 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -31.16 308.11 -7.66 -38.82 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.41 Total: -0.45 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -0.20 Total: 0.27 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.77 Total: -44.28 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.09 Total: -15.15 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.16 -7.66 -38.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340479567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.935 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds