Wall clock time and date at job start Mon Mar 30 2020 17:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47384 * 2 1 4 4 C 1.50709 * 109.47041 * 240.00460 * 2 1 3 5 5 H 1.07990 * 119.99757 * 240.00086 * 4 2 1 6 6 C 1.37878 * 119.99643 * 59.99999 * 4 2 1 7 7 N 1.31513 * 120.00498 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99643 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47066 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47335 * 119.99565 * 8 6 4 11 11 H 1.48504 * 109.47045 * 239.99671 * 8 6 4 12 12 C 1.50701 * 109.47621 * 120.00317 * 2 1 3 13 13 O 1.21278 * 119.99686 * 119.99783 * 12 2 1 14 14 N 1.34775 * 119.99870 * 300.00358 * 12 2 1 15 15 C 1.46491 * 120.00039 * 179.97438 * 14 12 2 16 16 H 1.09002 * 110.78621 * 328.24466 * 15 14 12 17 17 C 1.54939 * 110.72743 * 91.49273 * 15 14 12 18 18 N 1.48532 * 103.22867 * 155.76994 * 17 15 14 19 19 C 1.47901 * 105.82396 * 320.79773 * 18 17 15 20 20 C 1.53997 * 107.05724 * 25.32897 * 19 18 17 21 21 C 1.52997 * 110.31228 * 117.69217 * 20 19 18 22 22 C 1.53003 * 110.30892 * 239.76383 * 20 19 18 23 23 H 1.08997 * 109.46808 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46901 * 299.99707 * 1 2 3 25 25 H 1.08996 * 109.47056 * 59.99443 * 1 2 3 26 26 H 0.96997 * 119.99776 * 180.02562 * 7 6 4 27 27 H 0.97002 * 119.99680 * 359.97438 * 14 12 2 28 28 H 1.09002 * 110.66320 * 37.34274 * 17 15 14 29 29 H 1.08998 * 110.66953 * 274.20853 * 17 15 14 30 30 H 1.00900 * 110.99912 * 81.31030 * 18 17 15 31 31 H 1.08998 * 109.91957 * 265.97750 * 19 18 17 32 32 H 1.09004 * 110.08512 * 144.76723 * 19 18 17 33 33 H 1.09002 * 109.47153 * 61.45259 * 21 20 19 34 34 H 1.09001 * 109.46832 * 301.45450 * 21 20 19 35 35 H 1.09004 * 109.47261 * 181.45431 * 21 20 19 36 36 H 1.08998 * 109.47067 * 297.20629 * 22 20 19 37 37 H 1.08998 * 109.47394 * 57.20431 * 22 20 19 38 38 H 1.09001 * 109.46932 * 177.20952 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3213 -1.1200 -4.0081 9 1 3.1464 -2.2867 -3.6040 10 1 1.1660 -1.5864 -4.8162 11 1 3.1465 -0.1869 -4.8166 12 6 2.0325 -0.7105 1.2304 13 8 2.7297 -1.6965 1.1189 14 7 1.7069 -0.2501 2.4545 15 6 2.1948 -0.9410 3.6506 16 1 2.2940 -2.0107 3.4660 17 6 3.5427 -0.3385 4.1204 18 7 3.5817 -0.6787 5.5657 19 6 2.1999 -0.4961 6.0604 20 6 1.2604 -0.6780 4.8539 21 6 0.3336 -1.8745 5.0780 22 6 0.4397 0.5926 4.6236 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7081 1.1611 -3.4844 27 1 1.1494 0.5387 2.5435 28 1 3.5509 0.7423 3.9793 29 1 4.3762 -0.8027 3.5932 30 1 3.8933 -1.6281 5.7054 31 1 2.0830 0.5053 6.4744 32 1 1.9737 -1.2417 6.8227 33 1 -0.2836 -1.6960 5.9586 34 1 0.9311 -2.7735 5.2292 35 1 -0.3070 -2.0063 4.2059 36 1 -0.1942 0.7778 5.4908 37 1 1.1121 1.4381 4.4780 38 1 -0.1834 0.4671 3.7382 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341466236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:57:40 Heat of formation + Delta-G solvation = -68.019099 kcal Electronic energy + Delta-G solvation = -18096.739350 eV Core-core repulsion = 15358.568562 eV Total energy + Delta-G solvation = -2738.170788 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33892 -39.58180 -35.78428 -35.02006 -33.84427 -32.45677 -28.96158 -28.36140 -27.21280 -26.03085 -24.53150 -22.73400 -21.06707 -20.04023 -18.34353 -17.93089 -17.31984 -16.95835 -16.38987 -16.00443 -15.22137 -15.05754 -14.73378 -14.50096 -14.34374 -14.18081 -13.52450 -13.22395 -13.00905 -12.97622 -12.85926 -12.69607 -12.59770 -12.51369 -12.23575 -12.04511 -11.91617 -11.71435 -11.57083 -11.04736 -10.62569 -10.35477 -10.22012 -9.40586 -8.16423 -6.26712 1.38351 1.40322 1.53765 1.91110 2.32223 2.50314 3.13063 3.30921 3.45111 3.78576 3.92714 4.10820 4.26221 4.32355 4.41562 4.58490 4.71425 4.74918 4.78694 4.83174 4.90544 4.93264 4.99594 5.02244 5.04529 5.16485 5.28037 5.36422 5.48037 5.55199 5.71137 5.76988 5.93087 6.20077 6.36420 6.72434 6.85175 7.39050 7.53969 8.89652 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041715 B = 0.005846 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.062692 B = 4788.052735 C = 5067.860503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.040 0.960 4 C -0.528 4.528 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.274 1.274 12 C 0.521 3.479 13 O -0.588 6.588 14 N -0.714 5.714 15 C 0.114 3.886 16 H 0.066 0.934 17 C 0.037 3.963 18 N -0.670 5.670 19 C 0.055 3.945 20 C -0.096 4.096 21 C -0.135 4.135 22 C -0.144 4.144 23 H 0.022 0.978 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.265 0.735 27 H 0.409 0.591 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.343 0.657 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 0.228 17.296 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.310 3.690 13 O -0.468 6.468 14 N -0.369 5.369 15 C 0.006 3.994 16 H 0.084 0.916 17 C -0.094 4.094 18 N -0.297 5.297 19 C -0.075 4.075 20 C -0.098 4.098 21 C -0.192 4.192 22 C -0.202 4.202 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.249 0.751 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.159 0.841 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.863 0.289 17.355 17.457 hybrid contribution -0.284 -0.931 -1.635 1.903 sum -2.148 -0.642 15.720 15.879 Atomic orbital electron populations 1.21544 0.95058 0.99343 1.01671 1.18817 0.95343 0.95910 0.89747 0.94179 1.21306 1.31515 1.12662 0.91150 0.93462 1.25598 0.95202 0.95757 1.01426 1.69950 1.37216 1.23598 1.24266 0.85543 0.78358 0.78567 0.79406 1.20558 1.19856 1.19915 1.21570 0.78094 0.83598 0.85712 1.90497 1.39977 1.28752 1.87542 1.46133 1.54181 1.32300 1.04317 1.22633 0.94887 0.96732 0.85098 0.91556 1.23372 0.96163 1.01267 0.88594 1.62761 1.23137 1.30658 1.13161 1.22947 0.85358 1.03673 0.95507 1.22007 0.96031 0.97656 0.94142 1.21857 0.98937 0.96213 1.02199 1.21875 0.99850 0.95596 1.02872 0.95927 0.93113 0.91017 0.92579 0.75139 0.90065 0.92243 0.84072 0.89390 0.89241 0.89874 0.92762 0.93901 0.89630 0.92013 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.87 71.98 0.64 -4.77 16 2 C 0.02 1.17 2.64 -12.28 -0.03 1.14 16 3 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16 4 C -0.53 -30.96 8.37 25.60 0.21 -30.74 16 5 H 0.05 2.98 6.75 -2.92 -0.02 2.96 16 6 C 0.02 1.09 5.30 84.65 0.45 1.53 16 7 N -0.91 -51.35 11.32 21.45 0.24 -51.10 16 8 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 9 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 C 0.52 24.15 7.15 87.66 0.63 24.78 16 13 O -0.59 -31.73 15.11 -3.02 -0.05 -31.78 16 14 N -0.71 -24.45 4.81 -436.84 -2.10 -26.55 16 15 C 0.11 3.30 2.85 46.20 0.13 3.44 16 16 H 0.07 2.28 7.27 -2.39 -0.02 2.27 16 17 C 0.04 1.02 7.23 86.65 0.63 1.65 16 18 N -0.67 -14.45 7.51 -502.19 -3.77 -18.22 16 19 C 0.05 0.95 6.85 86.45 0.59 1.54 16 20 C -0.10 -1.95 0.95 -51.30 -0.05 -2.00 16 21 C -0.13 -2.54 8.22 71.98 0.59 -1.95 16 22 C -0.14 -2.61 7.05 71.98 0.51 -2.10 16 23 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 24 H 0.05 1.86 7.56 -2.39 -0.02 1.84 16 25 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 26 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 27 H 0.41 12.08 5.35 -92.71 -0.50 11.58 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.34 6.66 8.92 -89.69 -0.80 5.86 16 31 H 0.09 1.41 7.68 -2.39 -0.02 1.39 16 32 H 0.09 1.21 7.68 -2.38 -0.02 1.19 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 35 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.12 8.01 -2.39 -0.02 1.10 16 38 H 0.05 1.10 6.90 -2.39 -0.02 1.09 16 Total: -1.00 -66.97 300.71 0.40 -66.56 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -0.24 Total: 21.24 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 4.30 Total: -7.48 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -5.63 Total: -95.88 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.05 Total: -31.78 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -66.97 0.40 -66.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341466236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.455 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds