Wall clock time and date at job start Mon Mar 30 2020 17:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46895 * 2 1 4 4 C 1.50695 * 109.47317 * 239.99614 * 2 1 3 5 5 H 1.07999 * 120.00421 * 245.48373 * 4 2 1 6 6 C 1.37885 * 120.00020 * 65.48377 * 4 2 1 7 7 N 1.31516 * 119.99626 * 10.20276 * 6 4 2 8 8 Si 1.86796 * 119.99866 * 190.20685 * 6 4 2 9 9 H 1.48495 * 109.47258 * 94.89021 * 8 6 4 10 10 H 1.48503 * 109.46767 * 214.89125 * 8 6 4 11 11 H 1.48502 * 109.47087 * 334.88333 * 8 6 4 12 12 C 1.50703 * 109.46777 * 119.99460 * 2 1 3 13 13 O 1.21285 * 119.99317 * 99.17956 * 12 2 1 14 14 N 1.34771 * 120.00217 * 279.17874 * 12 2 1 15 15 C 1.48142 * 127.83911 * 357.38989 * 14 12 2 16 16 C 1.54382 * 104.61878 * 140.41733 * 15 14 12 17 17 C 1.54281 * 104.96192 * 23.86501 * 16 15 14 18 18 C 1.53002 * 110.34403 * 118.87163 * 17 16 15 19 19 C 1.52998 * 110.34724 * 241.02384 * 17 16 15 20 20 N 1.46903 * 109.47092 * 297.12692 * 19 17 16 21 21 C 1.48144 * 127.83737 * 177.39256 * 14 12 2 22 22 H 1.09001 * 109.47140 * 296.42139 * 1 2 3 23 23 H 1.09006 * 109.46930 * 56.41794 * 1 2 3 24 24 H 1.09001 * 109.47151 * 176.41344 * 1 2 3 25 25 H 0.97000 * 119.99218 * 180.02562 * 7 6 4 26 26 H 1.08996 * 110.40626 * 21.62737 * 15 14 12 27 27 H 1.09012 * 110.40665 * 259.20108 * 15 14 12 28 28 H 1.09000 * 110.34144 * 264.99294 * 16 15 14 29 29 H 1.09002 * 110.43287 * 142.78260 * 16 15 14 30 30 H 1.08997 * 109.47278 * 61.45589 * 18 17 16 31 31 H 1.08997 * 109.47160 * 301.45552 * 18 17 16 32 32 H 1.08999 * 109.47540 * 181.45574 * 18 17 16 33 33 H 1.09008 * 109.47012 * 57.12238 * 19 17 16 34 34 H 1.09003 * 109.47229 * 177.12074 * 19 17 16 35 35 H 1.00890 * 110.99896 * 56.04171 * 20 19 17 36 36 H 1.00901 * 110.99515 * 179.97438 * 20 19 17 37 37 H 1.09009 * 110.41027 * 100.79759 * 21 14 12 38 38 H 1.09003 * 110.41252 * 338.36564 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5783 -1.6373 -1.1337 6 6 1.7950 -0.1772 -2.4796 7 7 1.3120 1.0407 -2.5937 8 14 2.1595 -1.1848 -4.0097 9 1 0.9216 -1.8731 -4.4556 10 1 2.6433 -0.2874 -5.0895 11 1 3.2035 -2.1945 -3.7005 12 6 2.0323 -0.7103 1.2306 13 8 2.3923 -1.8663 1.1589 14 7 2.0813 -0.0611 2.4106 15 6 1.7388 1.3540 2.6842 16 6 1.0078 1.3221 4.0436 17 6 1.5031 0.0333 4.7321 18 6 2.2194 0.3711 6.0412 19 6 0.3301 -0.9125 4.9976 20 7 -0.6132 -0.2744 5.9255 21 6 2.4901 -0.6007 3.7283 22 1 -0.3633 0.4573 0.9203 23 1 -0.3633 0.5685 -0.8562 24 1 -0.3633 -1.0257 -0.0643 25 1 1.1447 1.4156 -3.4725 26 1 1.0803 1.7426 1.9075 27 1 2.6439 1.9576 2.7535 28 1 -0.0710 1.2806 3.8928 29 1 1.2731 2.1957 4.6390 30 1 1.5236 0.8657 6.7189 31 1 3.0593 1.0345 5.8350 32 1 2.5856 -0.5461 6.5023 33 1 -0.1776 -1.1342 4.0587 34 1 0.7020 -1.8382 5.4369 35 1 -0.9230 0.6174 5.5696 36 1 -1.3977 -0.8795 6.1165 37 1 3.5125 -0.3024 3.9607 38 1 2.3983 -1.6868 3.7395 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341768153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:22 Heat of formation + Delta-G solvation = -46.627120 kcal Electronic energy + Delta-G solvation = -18114.976124 eV Core-core repulsion = 15377.732962 eV Total energy + Delta-G solvation = -2737.243162 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78138 -37.62222 -34.44810 -33.68158 -31.56014 -30.37983 -29.37292 -26.44671 -25.14836 -24.76046 -23.04611 -21.80984 -18.98436 -18.31665 -16.41132 -16.10826 -15.79751 -15.58344 -14.90172 -14.46507 -14.11124 -13.78849 -13.53726 -13.12824 -12.69055 -12.48331 -12.33327 -12.00631 -11.80249 -11.67364 -11.46126 -10.97452 -10.84678 -10.76326 -10.62364 -10.53864 -10.45661 -10.31298 -9.96315 -9.04510 -8.76275 -8.51997 -8.36254 -8.10115 -6.07521 -4.05532 3.33312 3.39557 3.45911 3.68541 3.70730 4.35666 4.47372 4.63010 4.79555 4.97211 5.28096 5.30810 5.37857 5.43062 5.64092 5.66186 5.79144 5.81344 5.93745 5.98356 6.06857 6.08459 6.25588 6.29555 6.34385 6.57047 6.76890 6.85638 6.91731 7.00629 7.31660 7.43468 7.62250 7.96354 8.14105 8.44090 9.01978 9.23389 9.58083 11.03284 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043782 B = 0.005852 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.372971 B = 4783.534742 C = 4887.620502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.034 3.966 3 H 0.053 0.947 4 C -0.504 4.504 5 H 0.071 0.929 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.542 3.458 13 O -0.547 6.547 14 N -0.634 5.634 15 C 0.103 3.897 16 C -0.124 4.124 17 C -0.074 4.074 18 C -0.125 4.125 19 C 0.075 3.925 20 N -0.848 5.848 21 C 0.110 3.890 22 H 0.015 0.985 23 H 0.074 0.926 24 H 0.035 0.965 25 H 0.261 0.739 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.339 0.661 36 H 0.339 0.661 37 H 0.064 0.936 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 2.709 15.132 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.013 3.987 3 H 0.071 0.929 4 C -0.542 4.542 5 H 0.090 0.910 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.335 3.665 13 O -0.423 6.423 14 N -0.370 5.370 15 C -0.021 4.021 16 C -0.163 4.163 17 C -0.075 4.075 18 C -0.183 4.183 19 C -0.056 4.056 20 N -0.378 5.378 21 C -0.014 4.014 22 H 0.034 0.966 23 H 0.093 0.907 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.083 0.917 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.928 2.123 15.322 15.588 hybrid contribution -0.556 -0.460 -1.635 1.787 sum -2.484 1.663 13.687 14.010 Atomic orbital electron populations 1.21634 0.96728 1.00189 0.99472 1.18826 0.93640 0.97215 0.88999 0.92899 1.21095 1.35560 1.08416 0.89173 0.91038 1.24938 0.95235 0.94692 0.99079 1.69967 1.45729 1.13701 1.23859 0.86494 0.78661 0.80183 0.82256 1.20631 1.21313 1.19671 1.21762 0.75373 0.86573 0.82815 1.90537 1.48699 1.18320 1.84763 1.49317 1.68593 1.11683 1.07455 1.22299 0.99330 0.83821 0.96677 1.22641 1.00150 0.97394 0.96114 1.21525 0.95316 0.95259 0.95415 1.21702 0.99529 1.01219 0.95815 1.21791 0.92991 0.96638 0.94148 1.58793 1.20826 1.08192 1.49986 1.22255 0.96759 0.99548 0.82852 0.96594 0.90731 0.94533 0.92950 0.89626 0.91718 0.91601 0.90416 0.91382 0.93061 0.92929 0.95064 0.91099 0.84826 0.84957 0.91736 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 8.86 37.16 0.33 -2.52 16 2 C 0.03 0.87 1.75 -92.92 -0.16 0.71 16 3 H 0.05 1.39 7.39 -51.93 -0.38 1.00 16 4 C -0.50 -14.55 8.28 -34.44 -0.29 -14.83 16 5 H 0.07 2.19 6.93 -52.49 -0.36 1.82 16 6 C 0.06 1.74 5.22 -17.82 -0.09 1.65 16 7 N -0.89 -25.38 12.21 55.43 0.68 -24.70 16 8 Si 0.90 21.97 29.55 -169.99 -5.02 16.95 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.54 12.94 7.06 -10.99 -0.08 12.87 16 13 O -0.55 -14.88 15.97 5.55 0.09 -14.79 16 14 N -0.63 -11.82 3.32 -169.31 -0.56 -12.38 16 15 C 0.10 1.53 6.75 -2.41 -0.02 1.51 16 16 C -0.12 -1.44 5.79 -25.34 -0.15 -1.59 16 17 C -0.07 -0.88 0.82 -153.11 -0.13 -1.01 16 18 C -0.13 -1.27 8.06 37.16 0.30 -0.97 16 19 C 0.08 0.89 5.52 -3.82 -0.02 0.87 16 20 N -0.85 -8.17 8.91 -10.36 -0.09 -8.26 16 21 C 0.11 1.69 6.13 -2.41 -0.01 1.67 16 22 H 0.02 0.31 7.35 -51.93 -0.38 -0.07 16 23 H 0.07 1.85 7.03 -51.93 -0.36 1.49 16 24 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.09 1.36 6.27 -51.93 -0.33 1.03 16 27 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.07 0.74 6.73 -51.93 -0.35 0.39 16 29 H 0.08 0.75 7.71 -51.93 -0.40 0.35 16 30 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16 31 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.03 0.44 8.14 -51.92 -0.42 0.01 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.34 3.03 7.43 -39.30 -0.29 2.74 16 36 H 0.34 2.81 9.08 -39.29 -0.36 2.45 16 37 H 0.06 0.93 7.85 -51.92 -0.41 0.52 16 38 H 0.08 1.26 7.62 -51.93 -0.40 0.87 16 LS Contribution 301.72 15.07 4.55 4.55 Total: -1.00 -31.60 301.72 -6.77 -38.37 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.09 Total: 1.92 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -0.31 Total: -1.65 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.02 Total: -45.34 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.09 Total: -14.79 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.60 -6.77 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341768153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.257 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds