Wall clock time and date at job start Mon Mar 30 2020 17:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46895 * 2 1 4 4 C 1.50695 * 109.47317 * 239.99614 * 2 1 3 5 5 H 1.07999 * 120.00421 * 245.48373 * 4 2 1 6 6 C 1.37885 * 120.00020 * 65.48377 * 4 2 1 7 7 N 1.31516 * 119.99626 * 10.20276 * 6 4 2 8 8 Si 1.86796 * 119.99866 * 190.20685 * 6 4 2 9 9 H 1.48495 * 109.47258 * 94.89021 * 8 6 4 10 10 H 1.48503 * 109.46767 * 214.89125 * 8 6 4 11 11 H 1.48502 * 109.47087 * 334.88333 * 8 6 4 12 12 C 1.50703 * 109.46777 * 119.99460 * 2 1 3 13 13 O 1.21285 * 119.99317 * 99.17956 * 12 2 1 14 14 N 1.34771 * 120.00217 * 279.17874 * 12 2 1 15 15 C 1.48142 * 127.83911 * 357.38989 * 14 12 2 16 16 C 1.54382 * 104.61878 * 140.41733 * 15 14 12 17 17 C 1.54281 * 104.96192 * 23.86501 * 16 15 14 18 18 C 1.53002 * 110.34403 * 118.87163 * 17 16 15 19 19 C 1.52998 * 110.34724 * 241.02384 * 17 16 15 20 20 N 1.46903 * 109.47092 * 297.12692 * 19 17 16 21 21 C 1.48144 * 127.83737 * 177.39256 * 14 12 2 22 22 H 1.09001 * 109.47140 * 296.42139 * 1 2 3 23 23 H 1.09006 * 109.46930 * 56.41794 * 1 2 3 24 24 H 1.09001 * 109.47151 * 176.41344 * 1 2 3 25 25 H 0.97000 * 119.99218 * 180.02562 * 7 6 4 26 26 H 1.08996 * 110.40626 * 21.62737 * 15 14 12 27 27 H 1.09012 * 110.40665 * 259.20108 * 15 14 12 28 28 H 1.09000 * 110.34144 * 264.99294 * 16 15 14 29 29 H 1.09002 * 110.43287 * 142.78260 * 16 15 14 30 30 H 1.08997 * 109.47278 * 61.45589 * 18 17 16 31 31 H 1.08997 * 109.47160 * 301.45552 * 18 17 16 32 32 H 1.08999 * 109.47540 * 181.45574 * 18 17 16 33 33 H 1.09008 * 109.47012 * 57.12238 * 19 17 16 34 34 H 1.09003 * 109.47229 * 177.12074 * 19 17 16 35 35 H 1.00890 * 110.99896 * 56.04171 * 20 19 17 36 36 H 1.00901 * 110.99515 * 179.97438 * 20 19 17 37 37 H 1.09009 * 110.41027 * 100.79759 * 21 14 12 38 38 H 1.09003 * 110.41252 * 338.36564 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5783 -1.6373 -1.1337 6 6 1.7950 -0.1772 -2.4796 7 7 1.3120 1.0407 -2.5937 8 14 2.1595 -1.1848 -4.0097 9 1 0.9216 -1.8731 -4.4556 10 1 2.6433 -0.2874 -5.0895 11 1 3.2035 -2.1945 -3.7005 12 6 2.0323 -0.7103 1.2306 13 8 2.3923 -1.8663 1.1589 14 7 2.0813 -0.0611 2.4106 15 6 1.7388 1.3540 2.6842 16 6 1.0078 1.3221 4.0436 17 6 1.5031 0.0333 4.7321 18 6 2.2194 0.3711 6.0412 19 6 0.3301 -0.9125 4.9976 20 7 -0.6132 -0.2744 5.9255 21 6 2.4901 -0.6007 3.7283 22 1 -0.3633 0.4573 0.9203 23 1 -0.3633 0.5685 -0.8562 24 1 -0.3633 -1.0257 -0.0643 25 1 1.1447 1.4156 -3.4725 26 1 1.0803 1.7426 1.9075 27 1 2.6439 1.9576 2.7535 28 1 -0.0710 1.2806 3.8928 29 1 1.2731 2.1957 4.6390 30 1 1.5236 0.8657 6.7189 31 1 3.0593 1.0345 5.8350 32 1 2.5856 -0.5461 6.5023 33 1 -0.1776 -1.1342 4.0587 34 1 0.7020 -1.8382 5.4369 35 1 -0.9230 0.6174 5.5696 36 1 -1.3977 -0.8795 6.1165 37 1 3.5125 -0.3024 3.9607 38 1 2.3983 -1.6868 3.7395 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341768153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:21 Heat of formation + Delta-G solvation = -69.148297 kcal Electronic energy + Delta-G solvation = -18115.952715 eV Core-core repulsion = 15377.732962 eV Total energy + Delta-G solvation = -2738.219753 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18244 -39.19358 -35.81436 -35.60660 -32.97702 -32.07634 -30.53970 -27.61348 -27.25588 -25.91398 -24.30060 -23.54399 -20.30427 -19.71302 -18.40296 -17.65858 -17.03782 -16.84762 -16.70862 -15.85000 -15.57160 -15.14926 -14.83406 -14.60511 -14.10871 -13.93100 -13.72817 -13.37751 -13.20389 -13.00961 -12.87423 -12.73650 -12.56999 -12.49066 -12.36117 -12.04436 -11.81036 -11.49633 -11.45225 -11.15148 -10.56194 -10.37718 -9.63450 -9.59705 -8.23602 -6.28832 1.37800 1.39096 1.50948 1.86082 2.14986 2.43990 3.08811 3.38453 3.61405 3.75668 4.00502 4.19460 4.30830 4.34510 4.39704 4.62381 4.63980 4.71662 4.74248 4.82206 4.87126 4.87789 4.94755 5.00217 5.05706 5.25291 5.33715 5.36861 5.45235 5.59222 5.63082 5.79532 6.14282 6.19407 6.60847 6.66629 6.79791 7.34806 7.45094 8.86344 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043782 B = 0.005852 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.372971 B = 4783.534742 C = 4887.620502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.033 3.967 3 H 0.042 0.958 4 C -0.534 4.534 5 H 0.043 0.957 6 C 0.025 3.975 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.538 3.462 13 O -0.594 6.594 14 N -0.632 5.632 15 C 0.093 3.907 16 C -0.113 4.113 17 C -0.064 4.064 18 C -0.118 4.118 19 C 0.080 3.920 20 N -0.840 5.840 21 C 0.104 3.896 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.024 0.976 25 H 0.267 0.733 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.004 0.996 34 H 0.068 0.932 35 H 0.346 0.654 36 H 0.348 0.652 37 H 0.079 0.921 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 3.990 16.612 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.012 3.988 3 H 0.060 0.940 4 C -0.573 4.573 5 H 0.062 0.938 6 C -0.175 4.175 7 N -0.548 5.548 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.205 1.205 12 C 0.330 3.670 13 O -0.475 6.475 14 N -0.366 5.366 15 C -0.029 4.029 16 C -0.151 4.151 17 C -0.065 4.065 18 C -0.175 4.175 19 C -0.052 4.052 20 N -0.371 5.371 21 C -0.019 4.019 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.022 0.978 34 H 0.086 0.914 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.097 0.903 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.386 3.461 16.852 17.369 hybrid contribution -0.404 -0.811 -2.029 2.222 sum -2.790 2.651 14.823 15.315 Atomic orbital electron populations 1.21435 0.95335 0.99394 1.00355 1.18716 0.94751 0.96161 0.89150 0.93984 1.21211 1.36604 1.08071 0.91365 0.93843 1.25577 0.94894 0.95620 1.01387 1.70017 1.45613 1.14339 1.24812 0.85623 0.78531 0.78841 0.79169 1.19693 1.19790 1.20457 1.21347 0.75536 0.86002 0.84083 1.90500 1.51063 1.20110 1.85810 1.49192 1.66823 1.13397 1.07166 1.22617 1.00434 0.81503 0.98346 1.22637 1.00077 0.98271 0.94155 1.21462 0.94572 0.95045 0.95444 1.21659 0.99836 1.01601 0.94432 1.21667 0.93293 0.96852 0.93348 1.58763 1.21039 1.08549 1.48738 1.22529 0.98656 0.98786 0.81912 0.93314 0.92394 0.95702 0.92406 0.90705 0.90050 0.90975 0.87220 0.90351 0.92008 0.92887 0.97758 0.91368 0.84047 0.83937 0.90331 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.05 8.86 71.98 0.64 -4.41 16 2 C 0.03 1.75 1.75 -12.29 -0.02 1.72 16 3 H 0.04 2.26 7.39 -2.39 -0.02 2.24 16 4 C -0.53 -31.82 8.28 25.60 0.21 -31.61 16 5 H 0.04 2.78 6.93 -2.91 -0.02 2.76 16 6 C 0.03 1.43 5.22 84.66 0.44 1.87 16 7 N -0.91 -51.73 12.21 21.45 0.26 -51.46 16 8 Si 0.95 45.41 29.55 68.60 2.03 47.44 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 12 C 0.54 26.41 7.06 87.66 0.62 27.03 16 13 O -0.59 -33.74 15.97 -3.04 -0.05 -33.79 16 14 N -0.63 -23.41 3.32 -807.95 -2.68 -26.09 16 15 C 0.09 2.61 6.75 86.53 0.58 3.19 16 16 C -0.11 -2.25 5.79 31.50 0.18 -2.07 16 17 C -0.06 -1.37 0.82 -51.28 -0.04 -1.42 16 18 C -0.12 -1.98 8.06 71.98 0.58 -1.40 16 19 C 0.08 1.76 5.52 86.30 0.48 2.24 16 20 N -0.84 -13.90 8.91 -186.70 -1.66 -15.56 16 21 C 0.10 3.11 6.13 86.53 0.53 3.64 16 22 H 0.05 1.91 7.35 -2.39 -0.02 1.90 16 23 H 0.06 2.90 7.03 -2.38 -0.02 2.88 16 24 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.07 2.27 6.27 -2.39 -0.01 2.25 16 27 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.07 1.39 6.73 -2.39 -0.02 1.37 16 29 H 0.11 1.58 7.71 -2.39 -0.02 1.56 16 30 H 0.08 1.21 7.67 -2.39 -0.02 1.20 16 31 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.35 5.04 7.43 -89.70 -0.67 4.37 16 36 H 0.35 4.94 9.08 -89.69 -0.81 4.13 16 37 H 0.08 2.14 7.85 -2.38 -0.02 2.12 16 38 H 0.06 1.90 7.62 -2.39 -0.02 1.89 16 Total: -1.00 -69.84 301.72 1.68 -68.16 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -0.42 Total: 12.51 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 4.20 Total: -1.21 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -4.08 Total: -93.11 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.05 Total: -33.79 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -69.84 1.68 -68.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341768153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.984 kcal (2) G-P(sol) polarization free energy of solvation -69.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds