Wall clock time and date at job start Mon Mar 30 2020 17:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47127 * 2 1 4 4 C 1.50700 * 109.47157 * 239.99904 * 2 1 3 5 5 H 1.08004 * 119.99981 * 245.47151 * 4 2 1 6 6 C 1.37878 * 119.99972 * 65.46516 * 4 2 1 7 7 N 1.31521 * 119.99947 * 9.65445 * 6 4 2 8 8 Si 1.86798 * 119.99986 * 189.64887 * 6 4 2 9 9 H 1.48503 * 109.46851 * 84.99863 * 8 6 4 10 10 H 1.48502 * 109.47129 * 204.99665 * 8 6 4 11 11 H 1.48498 * 109.47192 * 325.00143 * 8 6 4 12 12 C 1.50699 * 109.46733 * 119.99809 * 2 1 3 13 13 O 1.21282 * 119.99435 * 120.00090 * 12 2 1 14 14 N 1.34771 * 120.00560 * 300.00228 * 12 2 1 15 15 C 1.46497 * 120.00164 * 180.02562 * 14 12 2 16 16 C 1.53006 * 109.46771 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.50521 * 54.92470 * 16 15 14 18 18 C 1.53128 * 109.49937 * 174.99719 * 16 15 14 19 19 C 1.53115 * 109.15949 * 177.63801 * 18 16 15 20 20 C 1.53041 * 109.30931 * 302.32901 * 19 18 16 21 21 N 1.46927 * 109.48308 * 59.15914 * 20 19 18 22 22 C 1.46848 * 111.21649 * 298.28477 * 21 20 19 23 23 H 1.09003 * 109.47459 * 303.69931 * 1 2 3 24 24 H 1.09010 * 109.47249 * 63.69343 * 1 2 3 25 25 H 1.09001 * 109.47354 * 183.69234 * 1 2 3 26 26 H 0.96994 * 119.99826 * 179.97438 * 7 6 4 27 27 H 0.97006 * 119.99673 * 359.97438 * 14 12 2 28 28 H 1.09000 * 109.47505 * 59.99737 * 15 14 12 29 29 H 1.08996 * 109.46829 * 299.99159 * 15 14 12 30 30 H 1.08992 * 109.52094 * 57.73162 * 18 16 15 31 31 H 1.09006 * 109.57541 * 297.57426 * 18 16 15 32 32 H 1.09009 * 109.50538 * 62.28534 * 19 18 16 33 33 H 1.08993 * 109.50458 * 182.36801 * 19 18 16 34 34 H 1.09004 * 109.46196 * 179.21782 * 20 19 18 35 35 H 1.09003 * 109.46014 * 299.18166 * 20 19 18 36 36 H 1.00897 * 110.98846 * 62.38735 * 21 20 19 37 37 H 1.08996 * 109.46370 * 301.72258 * 22 21 20 38 38 H 1.09008 * 109.45647 * 181.75924 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5784 -1.6372 -1.1338 6 6 1.7947 -0.1773 -2.4796 7 7 1.3012 1.0364 -2.5936 8 14 2.1737 -1.1790 -4.0101 9 1 1.0201 -2.0602 -4.3231 10 1 2.4212 -0.2630 -5.1524 11 1 3.3809 -2.0101 -3.7714 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1192 14 7 1.7066 -0.2500 2.4546 15 6 2.1954 -0.9403 3.6507 16 6 1.6857 -0.2187 4.9000 17 1 0.5994 -0.1391 4.8565 18 6 2.0908 -1.0087 6.1476 19 6 1.6286 -0.2502 7.3948 20 6 2.2430 1.1515 7.3912 21 7 1.8251 1.8666 6.1776 22 6 2.2984 1.1819 4.9678 23 1 -0.3634 0.5702 0.8550 24 1 -0.3634 0.4555 -0.9213 25 1 -0.3634 -1.0255 0.0662 26 1 1.1343 1.4116 -3.4723 27 1 1.1492 0.5389 2.5436 28 1 3.2854 -0.9400 3.6506 29 1 1.8323 -1.9680 3.6509 30 1 3.1745 -1.1221 6.1709 31 1 1.6220 -1.9926 6.1251 32 1 0.5414 -0.1709 7.3905 33 1 1.9509 -0.7865 8.2872 34 1 1.9044 1.6987 8.2711 35 1 3.3299 1.0716 7.4094 36 1 0.8237 1.9877 6.1562 37 1 3.3851 1.1019 4.9973 38 1 2.0001 1.7518 4.0878 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352989816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:59:14 Heat of formation + Delta-G solvation = -85.826569 kcal Electronic energy + Delta-G solvation = -17468.377242 eV Core-core repulsion = 14729.434265 eV Total energy + Delta-G solvation = -2738.942977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80217 -39.66499 -35.93578 -35.68790 -33.17777 -32.49439 -31.60617 -27.23148 -26.93369 -24.63504 -24.26589 -22.45987 -21.50687 -20.77042 -18.37879 -17.81549 -16.85091 -16.82888 -16.55547 -16.22073 -15.66455 -15.49297 -14.78826 -14.59342 -14.48560 -13.80979 -13.78308 -13.48301 -13.12408 -12.96008 -12.87212 -12.74901 -12.57398 -12.25738 -12.20292 -12.05949 -11.99458 -11.57073 -11.44379 -11.08420 -10.53094 -10.33126 -9.97321 -9.25819 -8.18997 -6.24159 1.40756 1.41236 1.52364 1.94080 2.36026 2.54460 3.13500 3.34731 3.70878 3.83141 3.89595 4.12242 4.26881 4.39867 4.42998 4.53494 4.63437 4.67593 4.72944 4.80337 4.92528 4.96832 5.01186 5.02245 5.10247 5.14870 5.20192 5.38645 5.48355 5.60591 5.73102 5.84825 6.06868 6.18229 6.51709 6.74846 6.87708 7.40054 7.55517 8.90525 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.053596 B = 0.004570 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.298052 B = 6125.805958 C = 6375.376914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.022 3.978 3 H 0.045 0.955 4 C -0.531 4.531 5 H 0.047 0.953 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.520 3.480 13 O -0.590 6.590 14 N -0.723 5.723 15 C 0.129 3.871 16 C -0.120 4.120 17 H 0.085 0.915 18 C -0.113 4.113 19 C -0.149 4.149 20 C 0.054 3.946 21 N -0.691 5.691 22 C 0.064 3.936 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.029 0.971 26 H 0.265 0.735 27 H 0.409 0.591 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.348 0.652 37 H 0.064 0.936 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 1.404 19.756 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.000 4.000 3 H 0.062 0.938 4 C -0.570 4.570 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.205 1.205 12 C 0.309 3.691 13 O -0.470 6.470 14 N -0.377 5.377 15 C 0.005 3.995 16 C -0.140 4.140 17 H 0.104 0.896 18 C -0.151 4.151 19 C -0.188 4.188 20 C -0.076 4.076 21 N -0.319 5.319 22 C -0.066 4.066 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.245 0.755 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.166 0.834 37 H 0.083 0.917 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.792 1.308 19.590 19.715 hybrid contribution -0.460 -1.031 -1.149 1.611 sum -2.252 0.277 18.441 18.580 Atomic orbital electron populations 1.21492 0.95051 0.99318 1.01192 1.18819 0.95176 0.96265 0.89693 0.93752 1.21250 1.36030 1.08351 0.91337 0.93486 1.25579 0.95095 0.95614 1.01429 1.70022 1.45708 1.14634 1.24673 0.85670 0.78581 0.78864 0.79157 1.19679 1.20089 1.20470 1.21550 0.78245 0.83623 0.85720 1.90505 1.40065 1.28844 1.87618 1.46011 1.54305 1.32523 1.04820 1.21284 0.98418 0.95893 0.83931 1.22027 1.01429 0.97188 0.93380 0.89639 1.21548 1.01453 0.98781 0.93321 1.22198 1.01188 0.97543 0.97839 1.22112 1.00413 0.92207 0.92828 1.60667 1.19368 1.50077 1.01815 1.22016 0.99860 0.91394 0.93332 0.92377 0.92920 0.95183 0.92578 0.75453 0.93247 0.93078 0.91924 0.91437 0.91341 0.90130 0.89382 0.91536 0.83363 0.91747 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.99 8.94 71.98 0.64 -4.35 16 2 C 0.02 1.10 2.50 -12.29 -0.03 1.07 16 3 H 0.04 2.36 8.08 -2.39 -0.02 2.34 16 4 C -0.53 -31.19 8.28 25.60 0.21 -30.98 16 5 H 0.05 2.96 6.79 -2.91 -0.02 2.94 16 6 C 0.02 1.27 5.17 84.65 0.44 1.70 16 7 N -0.91 -51.95 12.17 21.45 0.26 -51.69 16 8 Si 0.95 45.31 29.55 68.60 2.03 47.34 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 C 0.52 24.06 7.15 87.66 0.63 24.69 16 13 O -0.59 -32.15 15.47 -3.04 -0.05 -32.20 16 14 N -0.72 -24.20 5.20 -463.07 -2.41 -26.60 16 15 C 0.13 3.65 5.07 86.38 0.44 4.09 16 16 C -0.12 -2.32 2.37 -10.74 -0.03 -2.35 16 17 H 0.09 1.53 8.14 -2.38 -0.02 1.52 16 18 C -0.11 -1.87 5.29 30.68 0.16 -1.71 16 19 C -0.15 -1.88 6.08 30.65 0.19 -1.69 16 20 C 0.05 0.74 6.56 86.31 0.57 1.31 16 21 N -0.69 -11.60 6.87 -513.81 -3.53 -15.13 16 22 C 0.06 1.27 5.70 86.32 0.49 1.76 16 23 H 0.06 2.05 7.67 -2.39 -0.02 2.03 16 24 H 0.05 2.58 6.83 -2.38 -0.02 2.56 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.41 11.37 7.16 -92.70 -0.66 10.71 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 0.98 8.14 -2.38 -0.02 0.97 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.35 4.92 8.86 -89.70 -0.79 4.12 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.54 7.22 -2.38 -0.02 1.52 16 Total: -1.00 -67.96 304.16 -0.40 -68.36 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -0.41 Total: 16.38 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 3.71 Total: -6.46 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -5.67 Total: -93.42 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.05 Total: -32.20 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -67.96 -0.40 -68.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352989816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.468 kcal (2) G-P(sol) polarization free energy of solvation -67.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds