Wall clock time and date at job start Mon Mar 30 2020 17:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00261 * 2 1 4 4 O 1.21585 * 119.99975 * 179.97438 * 3 2 1 5 5 N 1.34771 * 119.99862 * 359.97438 * 3 2 1 6 6 C 1.46495 * 120.00195 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47522 * 180.02562 * 6 5 3 8 8 C 1.50698 * 109.47190 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00096 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99935 * 179.97438 * 8 7 6 11 11 N 1.31521 * 120.00159 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 120.00092 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47074 * 90.00025 * 12 10 8 14 14 H 1.48496 * 109.46948 * 209.99944 * 12 10 8 15 15 H 1.48501 * 109.46977 * 330.00125 * 12 10 8 16 16 C 1.46500 * 119.99716 * 179.97438 * 2 1 3 17 17 C 1.54961 * 110.92632 * 306.54194 * 16 2 1 18 18 C 1.54270 * 104.16191 * 156.29508 * 17 16 2 19 19 C 1.53869 * 106.63967 * 336.44607 * 18 17 16 20 20 C 1.54268 * 106.60115 * 359.97438 * 19 18 17 21 21 H 1.09003 * 109.47349 * 270.00323 * 1 2 3 22 22 H 1.09003 * 109.47237 * 29.99893 * 1 2 3 23 23 H 1.09000 * 109.47693 * 150.00009 * 1 2 3 24 24 H 0.97004 * 120.00466 * 0.02562 * 5 3 2 25 25 H 1.09007 * 109.47143 * 299.99845 * 6 5 3 26 26 H 1.09002 * 109.47311 * 59.99969 * 6 5 3 27 27 H 1.09001 * 109.46976 * 300.00040 * 7 6 5 28 28 H 1.09002 * 109.47076 * 59.99552 * 7 6 5 29 29 H 0.96993 * 119.99842 * 179.97438 * 11 10 8 30 30 H 1.09001 * 110.67461 * 183.23307 * 16 2 1 31 31 H 1.08997 * 110.47708 * 37.64106 * 17 16 2 32 32 H 1.09002 * 110.53308 * 274.97498 * 17 16 2 33 33 H 1.09002 * 110.03399 * 217.13605 * 18 17 16 34 34 H 1.08995 * 110.02943 * 95.75505 * 18 17 16 35 35 H 1.08999 * 110.03405 * 119.26051 * 19 18 17 36 36 H 1.09001 * 110.03705 * 240.64196 * 19 18 17 37 37 H 1.08997 * 110.48788 * 142.28685 * 20 19 18 38 38 H 1.09001 * 110.48482 * 264.93365 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1671 0.0005 5 7 1.4651 2.3343 -0.0005 6 6 2.1975 3.6030 -0.0011 7 6 1.2034 4.7660 -0.0010 8 6 1.9569 6.0711 -0.0022 9 1 3.0369 6.0710 -0.0026 10 6 1.2676 7.2651 -0.0028 11 7 1.9252 8.4041 -0.0034 12 14 -0.6005 7.2652 -0.0029 13 1 -1.0955 7.2660 1.3971 14 1 -1.0953 8.4774 -0.7036 15 1 -1.0955 6.0524 -0.7023 16 6 2.1974 -1.2688 0.0006 17 6 1.7278 -2.1784 1.1638 18 6 2.0868 -3.6042 0.6967 19 6 2.1615 -3.5587 -0.8395 20 6 1.8447 -2.1068 -1.2535 21 1 -0.3634 0.0001 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 0.4950 2.3344 -0.0005 25 1 2.8242 3.6612 0.8889 26 1 2.8242 3.6604 -0.8911 27 1 0.5764 4.7081 -0.8907 28 1 0.5770 4.7085 0.8892 29 1 1.4402 9.2441 -0.0042 30 1 3.2716 -1.0930 0.0580 31 1 0.6518 -2.0847 1.3107 32 1 2.2618 -1.9319 2.0815 33 1 1.3148 -4.3060 1.0123 34 1 3.0513 -3.9003 1.1088 35 1 3.1627 -3.8320 -1.1729 36 1 1.4265 -4.2391 -1.2695 37 1 2.4640 -1.8073 -2.0989 38 1 0.7875 -2.0017 -1.4975 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337784629.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:18 Heat of formation + Delta-G solvation = -65.298031 kcal Electronic energy + Delta-G solvation = -17282.149423 eV Core-core repulsion = 14544.096630 eV Total energy + Delta-G solvation = -2738.052793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.38425 -38.99050 -36.62855 -35.71569 -34.67893 -31.93304 -29.61282 -29.01453 -27.76099 -26.34333 -22.82262 -22.12308 -21.13729 -20.37523 -19.24121 -18.98138 -17.61181 -16.81356 -16.47655 -16.27872 -15.84612 -15.38707 -15.21204 -14.59995 -14.39836 -14.21711 -14.03577 -13.44784 -13.18496 -13.06490 -13.03633 -12.37452 -12.18662 -12.15142 -12.11006 -11.99419 -11.75564 -11.54994 -11.52399 -11.24688 -11.20726 -10.78591 -10.19184 -9.44835 -8.29712 -6.37335 1.39400 1.42513 1.53800 1.65562 2.10419 2.37521 3.02651 3.05149 3.70568 3.72381 3.96147 4.22436 4.31170 4.43083 4.45025 4.50188 4.54155 4.56694 4.68289 4.74252 4.81810 4.83274 4.94772 5.10233 5.10623 5.20668 5.27373 5.30863 5.40232 5.43036 5.50083 5.60002 5.67412 5.98045 6.23147 6.69651 6.99182 7.27114 7.55253 8.87250 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.054092 B = 0.004268 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.516822 B = 6558.889586 C = 6827.060228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.621 5.621 3 C 0.694 3.306 4 O -0.643 6.643 5 N -0.731 5.731 6 C 0.163 3.837 7 C -0.010 4.010 8 C -0.540 4.540 9 H 0.028 0.972 10 C 0.004 3.996 11 N -0.951 5.951 12 Si 0.961 3.039 13 H -0.264 1.264 14 H -0.286 1.286 15 H -0.236 1.236 16 C 0.141 3.859 17 C -0.128 4.128 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.131 4.131 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.100 0.900 24 H 0.409 0.591 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.268 0.732 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 -25.781 -0.169 27.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.357 5.357 3 C 0.396 3.604 4 O -0.526 6.526 5 N -0.388 5.388 6 C 0.039 3.961 7 C -0.047 4.047 8 C -0.579 4.579 9 H 0.046 0.954 10 C -0.193 4.193 11 N -0.591 5.591 12 Si 0.783 3.217 13 H -0.189 1.189 14 H -0.212 1.212 15 H -0.159 1.159 16 C 0.037 3.963 17 C -0.167 4.167 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.169 4.169 21 H 0.088 0.912 22 H 0.092 0.908 23 H 0.118 0.882 24 H 0.247 0.753 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.703 -25.588 -0.170 27.029 hybrid contribution -0.335 0.926 0.027 0.985 sum -9.038 -24.663 -0.143 26.267 Atomic orbital electron populations 1.21989 0.77610 1.04547 1.03166 1.47033 1.07702 1.03609 1.77371 1.16194 0.84956 0.81516 0.77784 1.90850 1.14071 1.87069 1.60573 1.45275 1.10439 1.04170 1.78902 1.20884 0.94559 0.81074 0.99613 1.19628 0.95402 0.91663 0.98049 1.21244 0.93746 0.91205 1.51667 0.95406 1.26102 1.05101 0.94546 0.93592 1.70080 1.38613 0.98484 1.51939 0.85512 0.77946 0.78873 0.79376 1.18907 1.21186 1.15909 1.22092 0.96257 0.81258 0.96684 1.22679 1.02259 0.94873 0.96855 1.22058 1.02376 0.95674 0.95472 1.22055 1.02385 0.95306 0.95826 1.22699 1.02434 0.95352 0.96465 0.91212 0.90787 0.88171 0.75344 0.94238 0.94231 0.94451 0.94594 0.92291 0.90984 0.89606 0.92480 0.89726 0.91742 0.91802 0.89759 0.92748 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 8.87 127.77 1.13 2.20 16 2 N -0.62 -15.70 2.89 -833.22 -2.41 -18.11 16 3 C 0.69 24.82 8.28 179.06 1.48 26.30 16 4 O -0.64 -29.28 15.72 -3.98 -0.06 -29.35 16 5 N -0.73 -25.02 5.42 -478.54 -2.59 -27.62 16 6 C 0.16 7.05 5.61 86.38 0.48 7.54 16 7 C -0.01 -0.44 4.16 29.85 0.12 -0.31 16 8 C -0.54 -31.38 9.66 25.60 0.25 -31.13 16 9 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 10 C 0.00 0.21 5.47 84.65 0.46 0.67 16 11 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 12 Si 0.96 42.40 27.47 68.60 1.88 44.28 16 13 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 14 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 16 C 0.14 3.22 3.29 46.31 0.15 3.37 16 17 C -0.13 -2.13 6.38 31.70 0.20 -1.93 16 18 C -0.12 -1.48 6.80 31.32 0.21 -1.26 16 19 C -0.12 -1.50 6.80 31.32 0.21 -1.29 16 20 C -0.13 -2.25 6.39 31.67 0.20 -2.04 16 21 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 22 H 0.07 1.09 6.36 -2.39 -0.02 1.08 16 23 H 0.10 1.05 6.38 -2.39 -0.02 1.03 16 24 H 0.41 10.98 6.20 -92.71 -0.58 10.40 16 25 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 28 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 29 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.07 2.16 7.00 -2.39 -0.02 2.15 16 31 H 0.09 1.16 7.08 -2.39 -0.02 1.14 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.19 6.36 -2.39 -0.02 1.17 16 Total: -1.00 -74.89 301.60 2.44 -72.45 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.41 Total: 15.75 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 4.92 Total: 2.11 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -4.70 Total: -105.25 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.06 Total: -29.35 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Total: -74.89 2.44 -72.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337784629.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.155 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds