Wall clock time and date at job start Mon Mar 30 2020 17:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46957 * 111.00347 * 2 1 4 4 C 1.53052 * 109.36089 * 176.81153 * 3 2 1 5 5 N 1.46958 * 109.36605 * 58.40165 * 4 3 2 6 6 C 1.46905 * 110.99732 * 176.81098 * 5 4 3 7 7 C 1.53007 * 109.46732 * 294.61027 * 6 5 4 8 8 C 1.53002 * 109.46467 * 185.32876 * 7 6 5 9 9 C 1.50705 * 109.46552 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00150 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99830 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99550 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99755 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47517 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47053 * 119.99801 * 13 11 9 16 16 H 1.48500 * 109.46970 * 239.99626 * 13 11 9 17 17 C 1.46953 * 110.87756 * 300.67220 * 5 4 3 18 18 C 1.52998 * 109.48709 * 179.28916 * 17 5 4 19 19 C 1.52991 * 109.49383 * 299.35471 * 17 5 4 20 20 C 1.46958 * 110.99903 * 236.19292 * 2 1 3 21 21 H 1.09001 * 109.46467 * 63.95547 * 1 2 3 22 22 H 1.08996 * 109.47479 * 183.95449 * 1 2 3 23 23 H 1.08998 * 109.46800 * 303.95585 * 1 2 3 24 24 H 1.08994 * 109.48538 * 56.84446 * 3 2 1 25 25 H 1.08997 * 109.50099 * 296.78456 * 3 2 1 26 26 H 1.08997 * 109.49000 * 298.42875 * 4 3 2 27 27 H 1.09003 * 109.50501 * 178.37852 * 4 3 2 28 28 H 1.08996 * 109.47456 * 54.60772 * 6 5 4 29 29 H 1.09001 * 109.46944 * 174.61108 * 6 5 4 30 30 H 1.08995 * 109.47239 * 305.32983 * 7 6 5 31 31 H 1.09003 * 109.47009 * 65.33090 * 7 6 5 32 32 H 1.08995 * 109.47478 * 299.99960 * 8 7 6 33 33 H 1.08993 * 109.47290 * 60.00395 * 8 7 6 34 34 H 0.97001 * 119.99373 * 180.02562 * 12 11 9 35 35 H 1.09001 * 109.47182 * 60.00043 * 18 17 5 36 36 H 1.08998 * 109.47566 * 180.02562 * 18 17 5 37 37 H 1.09006 * 109.47333 * 300.00136 * 18 17 5 38 38 H 1.09005 * 109.47031 * 64.96533 * 19 17 5 39 39 H 1.08997 * 109.47558 * 184.96072 * 19 17 5 40 40 H 1.09003 * 109.47373 * 304.96564 * 19 17 5 41 41 H 1.08993 * 109.49411 * 303.16334 * 20 2 1 42 42 H 1.08998 * 109.48613 * 63.20573 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3719 0.0000 4 6 3.5236 1.3289 0.0803 5 7 4.0502 0.5656 -1.0598 6 6 5.5192 0.5655 -1.0597 7 6 6.0293 1.9895 -1.2900 8 6 7.5534 1.9700 -1.4225 9 6 8.0558 3.3727 -1.6488 10 1 7.3579 4.1956 -1.6940 11 6 9.4066 3.6053 -1.7991 12 7 10.2564 2.6031 -1.7445 13 14 10.0293 5.3438 -2.0802 14 1 8.8801 6.2841 -2.1008 15 1 10.9579 5.7203 -0.9842 16 1 10.7450 5.4092 -3.3798 17 6 3.5235 -0.8063 -1.0596 18 6 4.0769 -1.5656 -2.2671 19 6 3.9471 -1.5157 0.2279 20 6 1.9957 -0.7634 -1.1400 21 1 -0.3632 0.4512 -0.9233 22 1 -0.3634 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 1.6014 1.9128 0.8602 25 1 1.6939 1.8776 -0.9172 26 1 3.8254 0.8478 1.0106 27 1 3.9183 2.3445 0.0514 28 1 5.8825 0.2004 -0.0991 29 1 5.8825 -0.0839 -1.8562 30 1 5.5901 2.3894 -2.2040 31 1 5.7459 2.6180 -0.4457 32 1 7.9925 1.5702 -0.5085 33 1 7.8367 1.3416 -2.2668 34 1 11.2066 2.7668 -1.8499 35 1 5.1651 -1.5943 -2.2107 36 1 3.6858 -2.5830 -2.2671 37 1 3.7739 -1.0603 -3.1842 38 1 3.4797 -1.0269 1.0828 39 1 3.6323 -2.5585 0.1888 40 1 5.0313 -1.4671 0.3297 41 1 1.6013 -1.7790 -1.1109 42 1 1.6935 -0.2825 -2.0703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347570001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:28 Heat of formation + Delta-G solvation = -0.830337 kcal Electronic energy + Delta-G solvation = -18189.304807 eV Core-core repulsion = 15589.880637 eV Total energy + Delta-G solvation = -2599.424170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.98565 -36.09737 -34.02895 -32.78921 -31.21352 -28.63815 -27.15975 -27.04998 -25.84512 -23.94875 -22.36286 -21.36316 -19.89733 -18.20107 -16.33651 -15.93663 -15.51905 -15.00833 -14.97424 -14.45642 -14.28123 -13.94911 -13.43807 -13.15669 -12.70073 -12.44826 -12.19361 -11.95082 -11.89010 -11.74326 -11.59120 -11.39355 -11.04031 -11.01013 -10.86804 -10.70213 -10.55448 -10.34761 -10.11514 -9.51746 -9.27109 -8.99796 -8.41169 -8.30779 -7.91138 -5.96087 -3.97696 3.33514 3.40824 3.45402 3.87546 4.12646 4.50157 4.79241 4.94793 5.07007 5.19741 5.31242 5.35051 5.39865 5.43155 5.48398 5.59163 5.68749 5.70078 5.72572 5.80261 5.93910 5.98028 6.00807 6.04826 6.10183 6.19787 6.23493 6.47690 6.50801 6.75571 6.85126 6.96287 6.98340 7.19459 7.47871 7.51385 7.73513 7.89296 8.05027 8.48712 9.09791 9.66095 11.15455 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040299 B = 0.004765 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.633552 B = 5874.943158 C = 6290.579268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.058 3.942 4 C 0.052 3.948 5 N -0.528 5.528 6 C 0.051 3.949 7 C -0.104 4.104 8 C 0.022 3.978 9 C -0.516 4.516 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.106 3.894 18 C -0.142 4.142 19 C -0.172 4.172 20 C 0.070 3.930 21 H 0.024 0.976 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.259 0.741 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.642 -7.724 2.827 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.268 5.268 3 C -0.070 4.070 4 C -0.076 4.076 5 N -0.253 5.253 6 C -0.075 4.075 7 C -0.142 4.142 8 C -0.016 4.016 9 C -0.555 4.555 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.211 1.211 17 C 0.016 3.984 18 C -0.200 4.200 19 C -0.231 4.231 20 C -0.058 4.058 21 H 0.042 0.958 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -17.471 -7.755 2.812 19.321 hybrid contribution 0.462 0.921 -0.130 1.038 sum -17.009 -6.835 2.682 18.526 Atomic orbital electron populations 1.22328 0.87654 1.01894 1.00361 1.62143 1.07303 1.14288 1.43070 1.22191 0.95302 0.88845 1.00709 1.22198 0.93320 0.99485 0.92647 1.62457 1.09132 1.11699 1.42007 1.22386 0.84970 1.00145 1.00041 1.21647 0.99161 0.92948 1.00446 1.19071 0.88561 0.96992 0.96943 1.21298 0.91962 0.93568 1.48634 0.92689 1.25026 0.97102 0.96861 0.95538 1.69979 1.02316 1.30533 1.50797 0.86557 0.78832 0.85024 0.77722 1.19752 1.21073 1.21050 1.21050 0.93318 0.88995 0.95017 1.21913 1.01762 0.98894 0.97460 1.22358 1.01293 1.00361 0.99059 1.22159 0.94141 0.97871 0.91619 0.95777 0.91620 0.91536 0.90678 0.94095 0.93953 0.89637 0.95196 0.90678 0.92692 0.93699 0.96867 0.96647 0.93143 0.91569 0.92559 0.91929 0.91271 0.92869 0.92656 0.90839 0.94162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.60 60.07 0.58 0.82 16 2 N -0.54 -6.37 4.20 -242.76 -1.02 -7.39 16 3 C 0.06 0.71 5.62 -3.77 -0.02 0.69 16 4 C 0.05 0.75 5.02 -3.77 -0.02 0.73 16 5 N -0.53 -8.18 4.48 -218.82 -0.98 -9.16 16 6 C 0.05 0.92 4.13 -3.82 -0.02 0.90 16 7 C -0.10 -2.21 4.93 -26.73 -0.13 -2.34 16 8 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 9 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 10 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 13 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.11 1.41 0.68 -131.55 -0.09 1.32 16 18 C -0.14 -1.77 8.17 37.16 0.30 -1.46 16 19 C -0.17 -2.23 7.69 37.15 0.29 -1.94 16 20 C 0.07 0.84 4.33 -3.77 -0.02 0.82 16 21 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 24 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.63 6.46 -51.93 -0.34 0.29 16 27 H 0.09 1.30 6.42 -51.93 -0.33 0.97 16 28 H 0.03 0.54 6.75 -51.93 -0.35 0.19 16 29 H 0.07 1.35 5.77 -51.93 -0.30 1.05 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.04 0.94 6.73 -51.93 -0.35 0.59 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 0.89 6.16 -51.93 -0.32 0.57 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.94 6.07 -51.93 -0.32 0.63 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.77 6.45 -51.93 -0.33 0.44 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -30.16 315.24 -8.89 -39.05 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -7.67 Total: -3.88 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 0.32 Total: -13.73 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -1.26 Total: -43.13 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.16 -8.89 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347570001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.218 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds