Wall clock time and date at job start Mon Mar 30 2020 17:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46957 * 111.00347 * 2 1 4 4 C 1.53052 * 109.36089 * 176.81153 * 3 2 1 5 5 N 1.46958 * 109.36605 * 58.40165 * 4 3 2 6 6 C 1.46905 * 110.99732 * 176.81098 * 5 4 3 7 7 C 1.53007 * 109.46732 * 294.61027 * 6 5 4 8 8 C 1.53002 * 109.46467 * 185.32876 * 7 6 5 9 9 C 1.50705 * 109.46552 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00150 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99830 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99550 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99755 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47517 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47053 * 119.99801 * 13 11 9 16 16 H 1.48500 * 109.46970 * 239.99626 * 13 11 9 17 17 C 1.46953 * 110.87756 * 300.67220 * 5 4 3 18 18 C 1.52998 * 109.48709 * 179.28916 * 17 5 4 19 19 C 1.52991 * 109.49383 * 299.35471 * 17 5 4 20 20 C 1.46958 * 110.99903 * 236.19292 * 2 1 3 21 21 H 1.09001 * 109.46467 * 63.95547 * 1 2 3 22 22 H 1.08996 * 109.47479 * 183.95449 * 1 2 3 23 23 H 1.08998 * 109.46800 * 303.95585 * 1 2 3 24 24 H 1.08994 * 109.48538 * 56.84446 * 3 2 1 25 25 H 1.08997 * 109.50099 * 296.78456 * 3 2 1 26 26 H 1.08997 * 109.49000 * 298.42875 * 4 3 2 27 27 H 1.09003 * 109.50501 * 178.37852 * 4 3 2 28 28 H 1.08996 * 109.47456 * 54.60772 * 6 5 4 29 29 H 1.09001 * 109.46944 * 174.61108 * 6 5 4 30 30 H 1.08995 * 109.47239 * 305.32983 * 7 6 5 31 31 H 1.09003 * 109.47009 * 65.33090 * 7 6 5 32 32 H 1.08995 * 109.47478 * 299.99960 * 8 7 6 33 33 H 1.08993 * 109.47290 * 60.00395 * 8 7 6 34 34 H 0.97001 * 119.99373 * 180.02562 * 12 11 9 35 35 H 1.09001 * 109.47182 * 60.00043 * 18 17 5 36 36 H 1.08998 * 109.47566 * 180.02562 * 18 17 5 37 37 H 1.09006 * 109.47333 * 300.00136 * 18 17 5 38 38 H 1.09005 * 109.47031 * 64.96533 * 19 17 5 39 39 H 1.08997 * 109.47558 * 184.96072 * 19 17 5 40 40 H 1.09003 * 109.47373 * 304.96564 * 19 17 5 41 41 H 1.08993 * 109.49411 * 303.16334 * 20 2 1 42 42 H 1.08998 * 109.48613 * 63.20573 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3719 0.0000 4 6 3.5236 1.3289 0.0803 5 7 4.0502 0.5656 -1.0598 6 6 5.5192 0.5655 -1.0597 7 6 6.0293 1.9895 -1.2900 8 6 7.5534 1.9700 -1.4225 9 6 8.0558 3.3727 -1.6488 10 1 7.3579 4.1956 -1.6940 11 6 9.4066 3.6053 -1.7991 12 7 10.2564 2.6031 -1.7445 13 14 10.0293 5.3438 -2.0802 14 1 8.8801 6.2841 -2.1008 15 1 10.9579 5.7203 -0.9842 16 1 10.7450 5.4092 -3.3798 17 6 3.5235 -0.8063 -1.0596 18 6 4.0769 -1.5656 -2.2671 19 6 3.9471 -1.5157 0.2279 20 6 1.9957 -0.7634 -1.1400 21 1 -0.3632 0.4512 -0.9233 22 1 -0.3634 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 1.6014 1.9128 0.8602 25 1 1.6939 1.8776 -0.9172 26 1 3.8254 0.8478 1.0106 27 1 3.9183 2.3445 0.0514 28 1 5.8825 0.2004 -0.0991 29 1 5.8825 -0.0839 -1.8562 30 1 5.5901 2.3894 -2.2040 31 1 5.7459 2.6180 -0.4457 32 1 7.9925 1.5702 -0.5085 33 1 7.8367 1.3416 -2.2668 34 1 11.2066 2.7668 -1.8499 35 1 5.1651 -1.5943 -2.2107 36 1 3.6858 -2.5830 -2.2671 37 1 3.7739 -1.0603 -3.1842 38 1 3.4797 -1.0269 1.0828 39 1 3.6323 -2.5585 0.1888 40 1 5.0313 -1.4671 0.3297 41 1 1.6013 -1.7790 -1.1109 42 1 1.6935 -0.2825 -2.0703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347570001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:27 Heat of formation + Delta-G solvation = -20.478296 kcal Electronic energy + Delta-G solvation = -18190.156806 eV Core-core repulsion = 15589.880637 eV Total energy + Delta-G solvation = -2600.276169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.08185 -37.26524 -35.75116 -34.33956 -32.87341 -30.02739 -28.18129 -28.01143 -27.54353 -25.17298 -24.02748 -22.40233 -21.64604 -19.32941 -18.44428 -17.12754 -16.64999 -16.45619 -16.16127 -16.04671 -15.51918 -15.12183 -14.77473 -14.31022 -14.19108 -13.74154 -13.58676 -13.52327 -12.98738 -12.83892 -12.82087 -12.63408 -12.51962 -12.48794 -12.30195 -12.15320 -12.06440 -11.78337 -11.46874 -11.32158 -11.15225 -10.99599 -10.55153 -9.35019 -9.12628 -8.19933 -6.30814 1.39796 1.40121 1.53773 2.41016 2.91864 3.00441 3.13184 3.77252 3.96968 4.01823 4.17410 4.22544 4.34894 4.41574 4.49594 4.59807 4.61075 4.64850 4.74865 4.75362 4.79978 4.85132 4.91039 4.91815 5.00471 5.03769 5.06193 5.11108 5.17615 5.25428 5.32805 5.46521 5.52864 5.74541 5.86092 6.02428 6.02767 6.21737 6.28178 6.32636 6.85916 7.38339 8.92281 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040299 B = 0.004765 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.633552 B = 5874.943158 C = 6290.579268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.551 5.551 3 C 0.065 3.935 4 C 0.050 3.950 5 N -0.534 5.534 6 C 0.066 3.934 7 C -0.087 4.087 8 C 0.027 3.973 9 C -0.541 4.541 10 H 0.058 0.942 11 C -0.001 4.001 12 N -0.933 5.933 13 Si 0.965 3.035 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.102 3.898 18 C -0.140 4.140 19 C -0.164 4.164 20 C 0.075 3.925 21 H 0.025 0.975 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.023 0.977 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.047 0.953 32 H -0.011 1.011 33 H -0.009 1.009 34 H 0.263 0.737 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.094 0.906 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.274 -7.514 2.934 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.276 5.276 3 C -0.064 4.064 4 C -0.078 4.078 5 N -0.259 5.259 6 C -0.061 4.061 7 C -0.125 4.125 8 C -0.011 4.011 9 C -0.579 4.579 10 H 0.076 0.924 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.187 1.187 15 H -0.203 1.203 16 H -0.203 1.203 17 C 0.012 3.988 18 C -0.198 4.198 19 C -0.223 4.223 20 C -0.053 4.053 21 H 0.044 0.956 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.110 0.890 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.007 0.993 33 H 0.010 0.990 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.112 0.888 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -19.130 -7.552 2.923 20.773 hybrid contribution 0.953 0.805 -0.151 1.257 sum -18.177 -6.747 2.772 19.586 Atomic orbital electron populations 1.22388 0.85821 1.03018 1.00876 1.62161 1.08945 1.13601 1.42889 1.22109 0.93495 0.89633 1.01129 1.22214 0.95060 0.98498 0.92002 1.62415 1.07149 1.13634 1.42687 1.22067 0.87004 0.97539 0.99538 1.21382 0.95589 0.95354 1.00214 1.18960 0.91909 0.95578 0.94611 1.21706 0.92636 0.94593 1.48981 0.92405 1.25982 0.97298 1.01596 0.94940 1.70106 1.02815 1.33062 1.51407 0.85393 0.78396 0.79351 0.77874 1.18667 1.20266 1.20279 1.21211 0.94542 0.87580 0.95477 1.21901 1.00792 1.00239 0.96874 1.22273 1.00066 1.01400 0.98545 1.22131 0.92734 0.99008 0.91465 0.95637 0.90298 0.90551 0.89016 0.94764 0.94433 0.90888 0.95836 0.91023 0.93186 0.93468 0.99271 0.99015 0.92772 0.93127 0.90029 0.92374 0.91887 0.90993 0.94335 0.88814 0.94821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.60 127.69 1.23 1.64 16 2 N -0.55 -11.62 4.20 -921.95 -3.87 -15.49 16 3 C 0.06 1.49 5.62 86.31 0.49 1.97 16 4 C 0.05 1.43 5.02 86.31 0.43 1.86 16 5 N -0.53 -16.38 4.48 -846.22 -3.79 -20.18 16 6 C 0.07 2.41 4.13 86.30 0.36 2.77 16 7 C -0.09 -3.80 4.93 30.60 0.15 -3.65 16 8 C 0.03 1.48 4.97 29.85 0.15 1.63 16 9 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 10 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 11 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 12 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 13 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 14 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 C 0.10 2.56 0.68 3.53 0.00 2.56 16 18 C -0.14 -3.32 8.17 71.98 0.59 -2.73 16 19 C -0.16 -4.05 7.69 71.98 0.55 -3.49 16 20 C 0.07 1.61 4.33 86.31 0.37 1.98 16 21 H 0.03 0.39 8.14 -2.39 -0.02 0.38 16 22 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.08 1.04 8.13 -2.39 -0.02 1.02 16 24 H 0.09 1.80 8.13 -2.39 -0.02 1.78 16 25 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.04 1.10 6.46 -2.39 -0.02 1.08 16 27 H 0.07 2.22 6.42 -2.39 -0.02 2.21 16 28 H 0.02 0.88 6.75 -2.39 -0.02 0.87 16 29 H 0.07 2.66 5.77 -2.39 -0.01 2.64 16 30 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.05 2.01 6.73 -2.39 -0.02 1.99 16 32 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.05 1.35 6.16 -2.39 -0.01 1.33 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.06 1.63 6.07 -2.38 -0.01 1.62 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.04 1.06 6.45 -2.39 -0.02 1.05 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 42 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -64.74 315.24 0.62 -64.13 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.95 Total: 8.52 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 5.01 Total: -26.56 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -7.38 Total: -93.22 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.74 0.62 -64.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347570001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.648 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds