Wall clock time and date at job start Mon Mar 30 2020 17:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34775 * 119.99947 * 2 1 4 4 O 1.21279 * 119.99986 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99926 * 179.97438 * 3 2 1 6 6 C 1.52992 * 109.47094 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47090 * 185.40898 * 6 5 3 8 8 H 1.08996 * 109.69792 * 54.93584 * 7 6 5 9 9 C 1.52760 * 109.51156 * 294.81508 * 7 6 5 10 10 C 1.53041 * 109.38120 * 185.70665 * 9 7 6 11 11 C 1.53034 * 109.53951 * 61.24040 * 10 9 7 12 12 C 1.53188 * 109.31445 * 298.63263 * 11 10 9 13 13 N 1.46927 * 108.77581 * 54.63489 * 12 11 10 14 14 C 1.36934 * 120.63277 * 126.37249 * 13 12 11 15 15 H 1.08001 * 120.00228 * 211.43509 * 14 13 12 16 16 C 1.38818 * 120.00088 * 31.42521 * 14 13 12 17 17 N 1.31618 * 119.99539 * 23.74068 * 16 14 13 18 18 Si 1.86795 * 120.00090 * 203.74545 * 16 14 13 19 19 H 1.48497 * 109.47301 * 89.99883 * 18 16 14 20 20 H 1.48498 * 109.47109 * 329.99771 * 18 16 14 21 21 H 1.48498 * 109.47056 * 209.99965 * 18 16 14 22 22 H 1.09002 * 109.47290 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47072 * 300.00246 * 1 2 3 24 24 H 1.08997 * 109.46709 * 60.00482 * 1 2 3 25 25 H 0.97004 * 119.99783 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47166 * 59.99242 * 5 3 2 27 27 H 1.09006 * 109.46719 * 299.99824 * 5 3 2 28 28 H 1.09000 * 109.47418 * 65.41110 * 6 5 3 29 29 H 1.09002 * 109.47518 * 305.41187 * 6 5 3 30 30 H 1.08994 * 109.56341 * 65.66653 * 9 7 6 31 31 H 1.09004 * 109.38333 * 305.62774 * 9 7 6 32 32 H 1.08993 * 109.45992 * 301.21722 * 10 9 7 33 33 H 1.09004 * 109.45593 * 181.25694 * 10 9 7 34 34 H 1.09004 * 109.49982 * 178.67717 * 11 10 9 35 35 H 1.09000 * 109.50050 * 58.58531 * 11 10 9 36 36 H 1.09006 * 109.58372 * 294.84881 * 12 11 10 37 37 H 1.09001 * 109.59212 * 174.42655 * 12 11 10 38 38 H 0.96999 * 120.00236 * 5.83898 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6096 -0.0002 7 6 5.6799 2.6116 -0.1356 8 1 5.9707 2.0487 -1.0225 9 6 6.3029 1.9681 1.1019 10 6 7.8260 2.0990 1.0301 11 6 8.2120 3.5797 1.0074 12 6 7.6108 4.2410 -0.2367 13 7 6.1624 3.9947 -0.2500 14 6 5.2787 5.0349 -0.3612 15 1 4.3093 4.9728 0.1108 16 6 5.6290 6.1694 -1.0804 17 7 6.5512 6.0963 -2.0166 18 14 4.7918 7.7997 -0.7193 19 1 5.5562 8.5283 0.3247 20 1 3.4096 7.5502 -0.2372 21 1 4.7438 8.6166 -1.9584 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.9500 -0.8401 0.0004 26 1 4.0096 0.6530 -0.8891 27 1 4.0089 0.6535 0.8909 28 1 3.8735 3.0954 0.9338 29 1 3.7160 3.1502 -0.8383 30 1 6.0298 0.9137 1.1416 31 1 5.9362 2.4729 1.9956 32 1 8.1897 1.6150 0.1237 33 1 8.2731 1.6206 1.9015 34 1 9.2977 3.6724 0.9800 35 1 7.8272 4.0698 1.9018 36 1 8.0624 3.8136 -1.1321 37 1 7.7987 5.3143 -0.2071 38 1 6.9254 5.2358 -2.2628 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353163599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:36 Heat of formation + Delta-G solvation = -37.701118 kcal Electronic energy + Delta-G solvation = -17946.542493 eV Core-core repulsion = 15209.686392 eV Total energy + Delta-G solvation = -2736.856101 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.53176 -37.90262 -34.52977 -33.46789 -33.14924 -29.92323 -29.25617 -26.81171 -24.87921 -23.74662 -21.90463 -20.67541 -19.90700 -19.04864 -17.25537 -16.69054 -15.77190 -15.52409 -14.66117 -14.13725 -13.95450 -13.58888 -13.38936 -13.34885 -13.12418 -12.83522 -12.38454 -12.33483 -11.81509 -11.36913 -11.09085 -10.97122 -10.64093 -10.42260 -10.14825 -10.09501 -9.95937 -9.77000 -9.64521 -9.54339 -9.10512 -8.96662 -8.25335 -6.73498 -5.91726 -3.13417 2.84657 3.30519 3.59534 3.62436 3.78485 4.68700 4.90020 5.13306 5.18089 5.36378 5.42767 5.52441 5.54987 5.60603 5.65322 5.70719 5.75040 6.00341 6.03386 6.23398 6.28983 6.40466 6.40929 6.45921 6.58120 6.65347 6.71513 6.79589 7.04655 7.20062 7.23252 7.32183 7.52112 8.21558 8.38803 8.72236 9.25235 9.97988 10.43209 11.34303 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019211 B = 0.007843 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.160902 B = 3569.116238 C = 4769.091436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.745 5.745 3 C 0.509 3.491 4 O -0.530 6.530 5 C -0.139 4.139 6 C -0.089 4.089 7 C 0.176 3.824 8 H 0.020 0.980 9 C -0.131 4.131 10 C -0.109 4.109 11 C -0.138 4.138 12 C 0.153 3.847 13 N -0.594 5.594 14 C -0.344 4.344 15 H 0.061 0.939 16 C -0.024 4.024 17 N -0.920 5.920 18 Si 1.064 2.936 19 H -0.294 1.294 20 H -0.291 1.291 21 H -0.291 1.291 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.399 0.601 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.014 0.986 37 H 0.074 0.926 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 -14.390 5.216 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.399 5.399 3 C 0.296 3.704 4 O -0.405 6.405 5 C -0.179 4.179 6 C -0.127 4.127 7 C 0.070 3.930 8 H 0.038 0.962 9 C -0.171 4.171 10 C -0.147 4.147 11 C -0.177 4.177 12 C 0.028 3.972 13 N -0.318 5.318 14 C -0.473 4.473 15 H 0.079 0.921 16 C -0.226 4.226 17 N -0.560 5.560 18 Si 0.894 3.106 19 H -0.222 1.222 20 H -0.217 1.217 21 H -0.217 1.217 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.233 0.767 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.093 0.907 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.900 -11.956 4.819 13.791 hybrid contribution 0.210 -2.211 0.421 2.261 sum -4.689 -14.168 5.240 15.817 Atomic orbital electron populations 1.21475 0.80279 1.01660 1.02233 1.45911 1.07471 1.08937 1.77551 1.21048 0.90891 0.83251 0.75195 1.90733 1.70562 1.31252 1.47915 1.21782 0.90579 1.01950 1.03625 1.21390 0.95338 0.91883 1.04121 1.20333 0.91748 0.87268 0.93694 0.96212 1.22031 0.95665 0.98842 1.00516 1.21386 0.96230 0.97067 1.00009 1.22071 0.98675 0.95689 1.01298 1.20906 0.84059 0.99687 0.92594 1.44128 1.01125 1.00683 1.85868 1.20020 0.99935 0.97033 1.30294 0.92091 1.25828 1.00394 1.02798 0.93549 1.70738 1.30475 1.28731 1.26043 0.83522 0.75320 0.75995 0.75722 1.22189 1.21730 1.21727 0.91078 0.92488 0.92421 0.76749 0.89325 0.89360 0.91606 0.90063 0.93298 0.92345 0.93004 0.93731 0.93427 0.92524 0.96755 0.90733 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.70 59.85 0.64 1.49 16 2 N -0.75 -8.16 5.71 -67.07 -0.38 -8.54 16 3 C 0.51 7.90 7.83 -10.98 -0.09 7.82 16 4 O -0.53 -10.88 15.91 5.56 0.09 -10.79 16 5 C -0.14 -2.01 5.32 -27.88 -0.15 -2.16 16 6 C -0.09 -1.78 2.80 -26.73 -0.07 -1.86 16 7 C 0.18 3.66 2.95 -67.82 -0.20 3.46 16 8 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 9 C -0.13 -2.28 4.96 -26.83 -0.13 -2.42 16 10 C -0.11 -1.85 5.88 -26.69 -0.16 -2.01 16 11 C -0.14 -2.68 6.08 -26.62 -0.16 -2.84 16 12 C 0.15 3.66 4.73 -3.71 -0.02 3.64 16 13 N -0.59 -14.97 2.81 -165.02 -0.46 -15.44 16 14 C -0.34 -9.72 8.35 -15.06 -0.13 -9.85 16 15 H 0.06 1.77 6.42 -52.49 -0.34 1.44 16 16 C -0.02 -0.69 4.69 -17.43 -0.08 -0.77 16 17 N -0.92 -28.17 12.54 55.49 0.70 -27.47 16 18 Si 1.06 26.46 29.98 -169.99 -5.10 21.37 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.40 2.95 8.83 -40.82 -0.36 2.59 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.09 1.06 6.98 -51.93 -0.36 0.70 16 28 H 0.07 1.43 7.70 -51.93 -0.40 1.03 16 29 H 0.08 1.93 7.15 -51.93 -0.37 1.55 16 30 H 0.05 0.70 6.99 -51.93 -0.36 0.33 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.01 0.35 7.85 -51.93 -0.41 -0.06 16 37 H 0.07 2.00 6.54 -51.93 -0.34 1.66 16 38 H 0.27 8.25 6.78 -40.82 -0.28 7.98 16 LS Contribution 299.23 15.07 4.51 4.51 Total: -1.00 -33.88 299.23 -7.44 -41.32 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.24 Total: 0.54 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -0.55 Total: -5.49 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.15 Total: -51.45 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -5.10 Total: 21.37 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.88 -7.44 -41.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353163599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.615 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds