Wall clock time and date at job start Mon Mar 30 2020 17:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99780 * 2 1 4 4 O 1.21281 * 119.99998 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99974 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47476 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47740 * 176.52059 * 6 5 3 8 8 H 1.08997 * 109.58207 * 303.65604 * 7 6 5 9 9 C 1.53188 * 109.58132 * 64.07661 * 7 6 5 10 10 C 1.53042 * 109.31223 * 174.42422 * 9 7 6 11 11 C 1.53042 * 109.53753 * 298.63772 * 10 9 7 12 12 C 1.53195 * 109.31338 * 61.36195 * 11 10 9 13 13 N 1.46923 * 108.77529 * 305.36518 * 12 11 10 14 14 C 1.36933 * 120.63043 * 233.63266 * 13 12 11 15 15 H 1.08003 * 120.00175 * 150.19847 * 14 13 12 16 16 C 1.38809 * 120.00217 * 330.19486 * 14 13 12 17 17 N 1.31622 * 119.99900 * 345.40295 * 16 14 13 18 18 Si 1.86800 * 120.00229 * 165.40734 * 16 14 13 19 19 H 1.48496 * 109.47138 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47228 * 120.00515 * 18 16 14 21 21 H 1.48503 * 109.46865 * 240.00054 * 18 16 14 22 22 H 1.08991 * 109.47619 * 299.72660 * 1 2 3 23 23 H 1.09003 * 109.47117 * 59.73316 * 1 2 3 24 24 H 1.09004 * 109.47163 * 179.72210 * 1 2 3 25 25 H 0.96995 * 120.00081 * 180.26706 * 2 1 3 26 26 H 1.09004 * 109.47434 * 300.00134 * 5 3 2 27 27 H 1.08999 * 109.47224 * 59.99786 * 5 3 2 28 28 H 1.09000 * 109.46986 * 296.52521 * 6 5 3 29 29 H 1.08999 * 109.47339 * 56.51816 * 6 5 3 30 30 H 1.09001 * 109.50515 * 294.37398 * 9 7 6 31 31 H 1.09005 * 109.50308 * 54.47810 * 9 7 6 32 32 H 1.09002 * 109.46433 * 178.61446 * 10 9 7 33 33 H 1.09005 * 109.46018 * 58.65456 * 10 9 7 34 34 H 1.09000 * 109.50094 * 301.41062 * 11 10 9 35 35 H 1.09003 * 109.52720 * 181.33319 * 11 10 9 36 36 H 1.09000 * 109.58386 * 185.58044 * 12 11 10 37 37 H 1.08994 * 109.70417 * 65.22486 * 12 11 10 38 38 H 0.96999 * 120.00297 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1673 0.0006 6 6 4.1558 2.6097 0.0011 7 6 5.6833 2.6107 0.0892 8 1 5.9984 2.0590 0.9749 9 6 6.2703 1.9542 -1.1642 10 6 7.7951 2.0824 -1.1358 11 6 8.1844 3.5625 -1.1383 12 6 7.6190 4.2372 0.1155 13 7 6.1710 3.9942 0.1711 14 6 5.2929 5.0374 0.2963 15 1 4.3014 4.9623 -0.1254 16 6 5.6768 6.1914 0.9654 17 7 6.7553 6.1867 1.7199 18 14 4.6629 7.7509 0.7952 19 1 3.5086 7.4953 -0.1033 20 1 4.1677 8.1678 2.1317 21 1 5.5067 8.8298 0.2214 22 1 -0.3634 0.5095 0.8923 23 1 -0.3633 0.5180 -0.8876 24 1 -0.3634 -1.0277 -0.0050 25 1 1.9500 -0.8400 -0.0039 26 1 4.0089 0.6536 0.8908 27 1 4.0095 0.6532 -0.8891 28 1 3.8446 3.1054 -0.9184 29 1 3.7421 3.1411 0.8582 30 1 5.9942 0.9000 -1.1861 31 1 5.8800 2.4515 -2.0522 32 1 8.2170 1.5945 -2.0145 33 1 8.1828 1.6064 -0.2351 34 1 7.7760 4.0447 -2.0264 35 1 9.2706 3.6535 -1.1420 36 1 7.8080 5.3097 0.0700 37 1 8.0939 3.8198 1.0033 38 1 7.0239 6.9932 2.1872 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353163604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:38 Heat of formation + Delta-G solvation = -33.916004 kcal Electronic energy + Delta-G solvation = -17908.522937 eV Core-core repulsion = 15171.830970 eV Total energy + Delta-G solvation = -2736.691966 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.49886 -37.71211 -34.50357 -33.28765 -32.96244 -30.06949 -29.16133 -26.77216 -25.05232 -23.66233 -21.95410 -20.55615 -19.77853 -19.00502 -17.11052 -16.20458 -15.71618 -15.48934 -14.90221 -13.97738 -13.96428 -13.63588 -13.38338 -13.15370 -12.87448 -12.51773 -12.37360 -12.32526 -11.87114 -11.22310 -11.14147 -10.82165 -10.62944 -10.43593 -10.23678 -10.08434 -9.91729 -9.83203 -9.63219 -9.32998 -9.10896 -9.07249 -8.35760 -6.50882 -5.66924 -3.10672 2.87268 3.33165 3.45873 3.53705 3.58317 4.60010 4.92703 5.20160 5.25022 5.39383 5.44886 5.56315 5.66070 5.70380 5.72821 5.77747 5.81446 6.09488 6.15518 6.34163 6.39757 6.43222 6.51393 6.59144 6.69541 6.82265 6.85718 6.95724 7.19541 7.27027 7.50939 7.54779 7.78257 7.96128 8.41188 8.58737 9.34527 9.97630 10.54348 11.41562 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.007883 C = 0.005829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.590454 B = 3551.194188 C = 4802.116409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.746 5.746 3 C 0.509 3.491 4 O -0.531 6.531 5 C -0.139 4.139 6 C -0.092 4.092 7 C 0.175 3.825 8 H 0.023 0.977 9 C -0.131 4.131 10 C -0.109 4.109 11 C -0.143 4.143 12 C 0.172 3.828 13 N -0.587 5.587 14 C -0.245 4.245 15 H 0.072 0.928 16 C 0.001 3.999 17 N -0.906 5.906 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.291 1.291 21 H -0.291 1.291 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.400 0.600 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.016 0.984 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 -14.287 -4.494 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.399 5.399 3 C 0.296 3.704 4 O -0.406 6.406 5 C -0.179 4.179 6 C -0.130 4.130 7 C 0.068 3.932 8 H 0.041 0.959 9 C -0.170 4.170 10 C -0.147 4.147 11 C -0.183 4.183 12 C 0.046 3.954 13 N -0.311 5.311 14 C -0.375 4.375 15 H 0.089 0.911 16 C -0.197 4.197 17 N -0.551 5.551 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.218 1.218 21 H -0.217 1.217 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.233 0.767 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.034 0.966 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.007 -13.350 -4.388 14.918 hybrid contribution -0.238 0.331 -0.008 0.408 sum -5.246 -13.019 -4.395 14.708 Atomic orbital electron populations 1.21470 0.80336 1.01637 1.02205 1.45913 1.07442 1.08974 1.77549 1.21078 0.90944 0.83221 0.75129 1.90728 1.70599 1.31270 1.47995 1.21783 0.90427 1.02000 1.03725 1.21421 0.95560 0.91956 1.04088 1.20425 0.91467 0.87610 0.93723 0.95924 1.22108 0.95800 0.98664 1.00448 1.21392 0.96149 0.97344 0.99800 1.22191 0.98643 0.95551 1.01886 1.20756 0.82955 1.00414 0.91225 1.44070 1.02033 0.99850 1.85101 1.19283 0.96830 0.93272 1.28123 0.91067 1.25075 0.98122 0.99614 0.96870 1.70032 1.26460 1.27297 1.31345 0.86272 0.79779 0.83729 0.77421 1.20115 1.21813 1.21744 0.92451 0.92505 0.91106 0.76734 0.89251 0.89273 0.91520 0.90210 0.93462 0.92425 0.94054 0.93022 0.92907 0.93660 0.89661 0.96612 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.70 59.85 0.64 1.48 16 2 N -0.75 -8.06 5.71 -67.08 -0.38 -8.44 16 3 C 0.51 7.79 7.83 -10.99 -0.09 7.71 16 4 O -0.53 -10.76 15.95 5.56 0.09 -10.67 16 5 C -0.14 -1.98 5.35 -27.89 -0.15 -2.13 16 6 C -0.09 -1.81 2.77 -26.73 -0.07 -1.88 16 7 C 0.17 3.62 2.97 -67.60 -0.20 3.42 16 8 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 9 C -0.13 -2.28 4.96 -26.61 -0.13 -2.41 16 10 C -0.11 -1.88 5.88 -26.69 -0.16 -2.04 16 11 C -0.14 -2.84 6.08 -26.61 -0.16 -3.00 16 12 C 0.17 4.21 5.28 -3.71 -0.02 4.19 16 13 N -0.59 -14.88 2.99 -164.79 -0.49 -15.38 16 14 C -0.25 -6.87 8.53 -15.06 -0.13 -6.99 16 15 H 0.07 2.01 6.28 -52.48 -0.33 1.68 16 16 C 0.00 0.03 4.96 -17.43 -0.09 -0.05 16 17 N -0.91 -26.95 11.17 55.49 0.62 -26.33 16 18 Si 0.90 22.70 29.58 -169.99 -5.03 17.68 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.40 2.91 8.83 -40.82 -0.36 2.55 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.09 1.06 6.85 -51.93 -0.36 0.70 16 28 H 0.07 1.42 7.64 -51.93 -0.40 1.02 16 29 H 0.08 1.83 7.29 -51.93 -0.38 1.45 16 30 H 0.05 0.67 6.92 -51.93 -0.36 0.31 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 2.34 6.11 -51.93 -0.32 2.02 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 299.83 15.07 4.52 4.52 Total: -1.00 -33.24 299.83 -7.51 -40.75 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.28 Total: -0.42 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.56 Total: -1.71 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.26 Total: -50.15 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.24 -7.51 -40.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353163604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.835 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds