Wall clock time and date at job start Mon Mar 30 2020 17:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47078 * 2 1 4 4 C 1.36936 * 119.99753 * 269.95709 * 3 2 1 5 5 H 1.07998 * 120.00313 * 322.07563 * 4 3 2 6 6 C 1.38811 * 119.99503 * 142.06750 * 4 3 2 7 7 N 1.31621 * 119.99981 * 157.06104 * 6 4 3 8 8 Si 1.86800 * 120.00337 * 337.06611 * 6 4 3 9 9 H 1.48504 * 109.47136 * 95.70612 * 8 6 4 10 10 H 1.48504 * 109.47220 * 215.70385 * 8 6 4 11 11 H 1.48497 * 109.47024 * 335.70616 * 8 6 4 12 12 C 1.46500 * 120.00176 * 89.95975 * 3 2 1 13 13 C 1.50700 * 109.47062 * 89.99806 * 12 3 2 14 14 O 1.21283 * 120.00052 * 0.02562 * 13 12 3 15 15 N 1.34778 * 120.00284 * 179.97438 * 13 12 3 16 16 C 1.46504 * 119.99744 * 0.02562 * 15 13 12 17 17 C 1.46494 * 120.00233 * 180.02562 * 15 13 12 18 18 C 1.53003 * 109.47133 * 90.00099 * 17 15 13 19 19 C 1.53000 * 117.49782 * 243.62068 * 18 17 15 20 20 C 1.52998 * 60.00042 * 252.50837 * 19 18 17 21 21 H 1.08999 * 109.47742 * 300.00379 * 1 2 3 22 22 H 1.09008 * 109.47090 * 60.00590 * 1 2 3 23 23 H 1.09001 * 109.46941 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47742 * 239.99620 * 2 1 3 25 25 H 1.09000 * 109.46793 * 119.99449 * 2 1 3 26 26 H 0.97002 * 120.00676 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.47015 * 330.00331 * 12 3 2 28 28 H 1.08996 * 109.47180 * 210.00261 * 12 3 2 29 29 H 1.08997 * 109.47069 * 89.99404 * 16 15 13 30 30 H 1.08997 * 109.46905 * 209.99908 * 16 15 13 31 31 H 1.08999 * 109.46897 * 330.00108 * 16 15 13 32 32 H 1.09000 * 109.46971 * 210.00265 * 17 15 13 33 33 H 1.09000 * 109.47073 * 330.00303 * 17 15 13 34 34 H 1.09005 * 115.54907 * 29.32886 * 18 17 15 35 35 H 1.08991 * 117.50221 * 0.02562 * 19 18 17 36 36 H 1.09003 * 117.49252 * 145.01840 * 19 18 17 37 37 H 1.08994 * 117.50182 * 252.51300 * 20 19 18 38 38 H 1.08998 * 117.49621 * 107.49041 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2473 2.0265 -1.1859 5 1 2.6669 1.4868 -2.0220 6 6 1.9400 3.3741 -1.3134 7 7 2.5403 4.1021 -2.2311 8 14 0.6747 4.1547 -0.1825 9 1 1.3655 4.7997 0.9629 10 1 -0.0974 5.1767 -0.9340 11 1 -0.2500 3.1083 0.3227 12 6 2.2616 2.0722 1.2687 13 6 3.6846 1.8355 1.7047 14 8 4.4230 1.1569 1.0226 15 7 4.1371 2.3788 2.8522 16 6 3.2454 3.1990 3.6759 17 6 5.5206 2.1491 3.2758 18 6 6.4186 3.2467 2.7015 19 6 7.5038 2.8243 1.7090 20 6 7.8883 3.2515 3.1269 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 2.3259 5.0439 -2.3200 27 1 1.5804 1.6883 2.0280 28 1 2.0947 3.1414 1.1380 29 1 2.7275 2.5635 4.3942 30 1 3.8304 3.9483 4.2091 31 1 2.5149 3.6952 3.0370 32 1 5.5751 2.1674 4.3642 33 1 5.8556 1.1779 2.9115 34 1 5.9378 4.2118 2.5415 35 1 7.5776 1.7647 1.4648 36 1 7.7368 3.5115 0.8957 37 1 8.3744 4.2197 3.2464 38 1 8.2154 2.4728 3.8159 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355664001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:40 Heat of formation + Delta-G solvation = 21.257880 kcal Electronic energy + Delta-G solvation = -18187.022543 eV Core-core repulsion = 15452.723096 eV Total energy + Delta-G solvation = -2734.299447 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.30203 -37.14115 -35.64577 -34.53334 -31.88108 -30.11347 -28.25758 -26.71089 -25.15252 -23.72528 -22.16405 -20.89522 -20.16606 -18.86007 -16.89195 -16.57965 -15.83122 -15.48052 -14.85473 -14.56113 -14.10151 -13.63494 -13.32000 -13.13412 -12.63977 -12.51945 -12.39410 -12.08823 -11.84658 -11.71237 -11.40043 -11.32228 -11.28561 -10.85807 -10.58447 -10.27882 -10.13820 -9.97378 -9.76317 -9.59733 -9.03941 -8.48541 -8.19629 -6.83033 -5.97717 -3.37451 3.20086 3.36490 3.41896 3.47610 3.55767 4.02348 4.49189 4.90709 4.95625 5.07165 5.16233 5.31194 5.34270 5.46753 5.57542 5.58130 5.71847 5.81153 5.86991 5.94433 5.96009 6.02536 6.15504 6.18994 6.29091 6.30251 6.39474 6.43167 6.53378 6.84987 7.00232 7.09519 7.88175 8.08636 8.44501 8.90452 9.09057 9.71196 10.10812 11.18145 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.008422 C = 0.007775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.405942 B = 3323.996932 C = 3600.233073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.150 3.850 3 N -0.581 5.581 4 C -0.255 4.255 5 H 0.079 0.921 6 C 0.033 3.967 7 N -0.895 5.895 8 Si 0.865 3.135 9 H -0.287 1.287 10 H -0.298 1.298 11 H -0.263 1.263 12 C 0.121 3.879 13 C 0.488 3.512 14 O -0.513 6.513 15 N -0.632 5.632 16 C 0.082 3.918 17 C 0.148 3.852 18 C -0.167 4.167 19 C -0.166 4.166 20 C -0.183 4.183 21 H 0.040 0.960 22 H 0.057 0.943 23 H 0.040 0.960 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.262 0.738 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 -1.837 13.936 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.024 3.976 3 N -0.301 5.301 4 C -0.384 4.384 5 H 0.097 0.903 6 C -0.168 4.168 7 N -0.536 5.536 8 Si 0.695 3.305 9 H -0.216 1.216 10 H -0.226 1.226 11 H -0.187 1.187 12 C -0.009 4.009 13 C 0.274 3.726 14 O -0.386 6.386 15 N -0.369 5.369 16 C -0.062 4.062 17 C 0.025 3.975 18 C -0.187 4.187 19 C -0.203 4.203 20 C -0.221 4.221 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.926 -2.101 13.394 13.869 hybrid contribution -0.626 0.932 0.652 1.299 sum 2.299 -1.169 14.046 14.281 Atomic orbital electron populations 1.22335 0.99435 0.99332 1.01654 1.20833 0.91480 0.85798 0.99462 1.43787 1.73821 1.11532 1.00947 1.18784 1.35928 0.93393 0.90248 0.90315 1.25483 0.98002 0.96687 0.96588 1.69902 1.40770 1.06731 1.36219 0.87098 0.84212 0.79024 0.80206 1.21562 1.22554 1.18714 1.21358 0.90589 0.98961 0.90008 1.22903 0.92421 0.78452 0.78789 1.90597 1.58164 1.38047 1.51785 1.48271 1.11295 1.53107 1.24265 1.21706 0.94391 0.94775 0.95355 1.20873 0.81356 0.97580 0.97723 1.22757 0.90339 1.01065 1.04505 1.22945 1.02639 1.02326 0.92379 1.22928 0.97614 1.02613 0.98903 0.94093 0.92375 0.94069 0.92730 0.94505 0.92784 0.91529 0.90265 0.93062 0.91624 0.91206 0.91134 0.90185 0.87998 0.88542 0.89048 0.89165 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 10.24 37.16 0.38 -2.72 16 2 C 0.15 3.15 6.39 -4.04 -0.03 3.12 16 3 N -0.58 -14.33 1.56 -174.61 -0.27 -14.61 16 4 C -0.25 -7.36 9.90 -15.06 -0.15 -7.51 16 5 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 6 C 0.03 0.95 5.29 -17.43 -0.09 0.86 16 7 N -0.90 -27.78 13.97 55.49 0.78 -27.00 16 8 Si 0.86 21.44 25.10 -169.99 -4.27 17.17 16 9 H -0.29 -6.71 6.68 56.52 0.38 -6.34 16 10 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 11 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.12 2.67 3.55 -5.19 -0.02 2.65 16 13 C 0.49 10.61 7.74 -10.98 -0.09 10.52 16 14 O -0.51 -13.04 16.01 5.56 0.09 -12.95 16 15 N -0.63 -10.80 2.87 -181.57 -0.52 -11.33 16 16 C 0.08 1.08 10.24 59.85 0.61 1.69 16 17 C 0.15 2.21 5.69 -4.04 -0.02 2.19 16 18 C -0.17 -2.50 6.01 -90.62 -0.54 -3.05 16 19 C -0.17 -2.53 10.18 -26.73 -0.27 -2.80 16 20 C -0.18 -2.21 10.25 -26.73 -0.27 -2.48 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 1.17 8.04 -51.93 -0.42 0.76 16 25 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 27 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 28 H 0.08 1.85 2.63 -51.93 -0.14 1.71 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 31 H 0.07 1.01 6.44 -51.93 -0.33 0.67 16 32 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.08 1.32 7.15 -51.93 -0.37 0.95 16 34 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.10 1.54 8.03 -51.93 -0.42 1.12 16 36 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -33.42 311.93 -6.30 -39.72 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.32 Total: 1.83 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -0.49 Total: 2.47 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.02 Total: -52.93 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.27 Total: 17.17 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.42 -6.30 -39.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355664001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.978 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds