Wall clock time and date at job start Mon Mar 30 2020 17:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47078 * 2 1 4 4 C 1.36936 * 119.99753 * 269.95709 * 3 2 1 5 5 H 1.07998 * 120.00313 * 322.07563 * 4 3 2 6 6 C 1.38811 * 119.99503 * 142.06750 * 4 3 2 7 7 N 1.31621 * 119.99981 * 157.06104 * 6 4 3 8 8 Si 1.86800 * 120.00337 * 337.06611 * 6 4 3 9 9 H 1.48504 * 109.47136 * 95.70612 * 8 6 4 10 10 H 1.48504 * 109.47220 * 215.70385 * 8 6 4 11 11 H 1.48497 * 109.47024 * 335.70616 * 8 6 4 12 12 C 1.46500 * 120.00176 * 89.95975 * 3 2 1 13 13 C 1.50700 * 109.47062 * 89.99806 * 12 3 2 14 14 O 1.21283 * 120.00052 * 0.02562 * 13 12 3 15 15 N 1.34778 * 120.00284 * 179.97438 * 13 12 3 16 16 C 1.46504 * 119.99744 * 0.02562 * 15 13 12 17 17 C 1.46494 * 120.00233 * 180.02562 * 15 13 12 18 18 C 1.53003 * 109.47133 * 90.00099 * 17 15 13 19 19 C 1.53000 * 117.49782 * 243.62068 * 18 17 15 20 20 C 1.52998 * 60.00042 * 252.50837 * 19 18 17 21 21 H 1.08999 * 109.47742 * 300.00379 * 1 2 3 22 22 H 1.09008 * 109.47090 * 60.00590 * 1 2 3 23 23 H 1.09001 * 109.46941 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47742 * 239.99620 * 2 1 3 25 25 H 1.09000 * 109.46793 * 119.99449 * 2 1 3 26 26 H 0.97002 * 120.00676 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.47015 * 330.00331 * 12 3 2 28 28 H 1.08996 * 109.47180 * 210.00261 * 12 3 2 29 29 H 1.08997 * 109.47069 * 89.99404 * 16 15 13 30 30 H 1.08997 * 109.46905 * 209.99908 * 16 15 13 31 31 H 1.08999 * 109.46897 * 330.00108 * 16 15 13 32 32 H 1.09000 * 109.46971 * 210.00265 * 17 15 13 33 33 H 1.09000 * 109.47073 * 330.00303 * 17 15 13 34 34 H 1.09005 * 115.54907 * 29.32886 * 18 17 15 35 35 H 1.08991 * 117.50221 * 0.02562 * 19 18 17 36 36 H 1.09003 * 117.49252 * 145.01840 * 19 18 17 37 37 H 1.08994 * 117.50182 * 252.51300 * 20 19 18 38 38 H 1.08998 * 117.49621 * 107.49041 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2473 2.0265 -1.1859 5 1 2.6669 1.4868 -2.0220 6 6 1.9400 3.3741 -1.3134 7 7 2.5403 4.1021 -2.2311 8 14 0.6747 4.1547 -0.1825 9 1 1.3655 4.7997 0.9629 10 1 -0.0974 5.1767 -0.9340 11 1 -0.2500 3.1083 0.3227 12 6 2.2616 2.0722 1.2687 13 6 3.6846 1.8355 1.7047 14 8 4.4230 1.1569 1.0226 15 7 4.1371 2.3788 2.8522 16 6 3.2454 3.1990 3.6759 17 6 5.5206 2.1491 3.2758 18 6 6.4186 3.2467 2.7015 19 6 7.5038 2.8243 1.7090 20 6 7.8883 3.2515 3.1269 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 2.3259 5.0439 -2.3200 27 1 1.5804 1.6883 2.0280 28 1 2.0947 3.1414 1.1380 29 1 2.7275 2.5635 4.3942 30 1 3.8304 3.9483 4.2091 31 1 2.5149 3.6952 3.0370 32 1 5.5751 2.1674 4.3642 33 1 5.8556 1.1779 2.9115 34 1 5.9378 4.2118 2.5415 35 1 7.5776 1.7647 1.4648 36 1 7.7368 3.5115 0.8957 37 1 8.3744 4.2197 3.2464 38 1 8.2154 2.4728 3.8159 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355664001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:39 Heat of formation + Delta-G solvation = -0.698639 kcal Electronic energy + Delta-G solvation = -18187.974649 eV Core-core repulsion = 15452.723096 eV Total energy + Delta-G solvation = -2735.251553 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84461 -38.47318 -37.38824 -35.98718 -34.00441 -31.77186 -29.73260 -28.17823 -26.64389 -25.54931 -23.25617 -22.40321 -21.68464 -20.43505 -18.79441 -18.19649 -17.40644 -16.99288 -16.43411 -16.05516 -15.66138 -15.18174 -14.88786 -14.82295 -14.35156 -13.88730 -13.77545 -13.58029 -13.40743 -13.11379 -12.97502 -12.63699 -12.57594 -12.40915 -12.37428 -12.05889 -11.65507 -11.61262 -11.42127 -10.92714 -10.81136 -10.55011 -9.55373 -8.81241 -8.20544 -5.60244 1.24368 1.41239 1.53632 1.82915 2.13831 2.40678 2.87291 3.03174 3.35573 3.76738 3.86501 3.98852 4.11270 4.28773 4.32834 4.37520 4.39872 4.45130 4.59664 4.65021 4.73764 4.76592 4.81473 4.84975 4.92094 4.98220 5.04582 5.18908 5.23816 5.25189 5.54370 5.72810 5.90958 6.16562 6.47381 6.92379 7.40545 7.60948 7.99141 9.00016 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.008422 C = 0.007775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.405942 B = 3323.996932 C = 3600.233073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 N -0.594 5.594 4 C -0.254 4.254 5 H 0.022 0.978 6 C -0.028 4.028 7 N -0.952 5.952 8 Si 0.941 3.059 9 H -0.261 1.261 10 H -0.305 1.305 11 H -0.239 1.239 12 C 0.118 3.882 13 C 0.481 3.519 14 O -0.568 6.568 15 N -0.625 5.625 16 C 0.071 3.929 17 C 0.148 3.852 18 C -0.182 4.182 19 C -0.200 4.200 20 C -0.138 4.138 21 H 0.054 0.946 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.263 0.737 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.115 0.885 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 -1.377 18.262 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 N -0.316 5.316 4 C -0.384 4.384 5 H 0.039 0.961 6 C -0.224 4.224 7 N -0.595 5.595 8 Si 0.767 3.233 9 H -0.187 1.187 10 H -0.234 1.234 11 H -0.162 1.162 12 C -0.012 4.012 13 C 0.268 3.732 14 O -0.445 6.445 15 N -0.360 5.360 16 C -0.071 4.071 17 C 0.025 3.975 18 C -0.201 4.201 19 C -0.238 4.238 20 C -0.175 4.175 21 H 0.073 0.927 22 H 0.054 0.946 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.133 0.867 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.732 -1.645 17.805 17.965 hybrid contribution -0.130 0.723 -0.690 1.008 sum 1.602 -0.922 17.115 17.215 Atomic orbital electron populations 1.22180 0.96704 1.01498 1.01102 1.20962 0.93567 0.84038 0.99438 1.43858 1.74629 1.12573 1.00505 1.18524 1.35319 0.93628 0.90965 0.96060 1.26225 0.99781 0.97147 0.99255 1.70069 1.42730 1.07184 1.39529 0.85883 0.80763 0.78199 0.78450 1.18720 1.23372 1.16178 1.21466 0.91832 0.98217 0.89645 1.22763 0.92170 0.78460 0.79832 1.90583 1.59217 1.40798 1.53901 1.48235 1.12723 1.52002 1.23063 1.22045 0.94225 0.95546 0.95237 1.21047 0.79943 0.96443 1.00057 1.22769 0.91814 1.00479 1.05053 1.22929 1.05344 1.01196 0.94289 1.23021 0.94681 1.03929 0.95867 0.92729 0.94643 0.90602 0.94839 0.92558 0.92816 0.87301 0.91310 0.89717 0.88819 0.92226 0.86675 0.92331 0.89038 0.90188 0.90412 0.87234 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.37 10.24 71.98 0.74 -4.63 16 2 C 0.14 6.01 6.39 86.38 0.55 6.57 16 3 N -0.59 -29.44 1.56 -706.35 -1.10 -30.54 16 4 C -0.25 -15.39 9.90 84.03 0.83 -14.55 16 5 H 0.02 1.50 8.06 -2.91 -0.02 1.47 16 6 C -0.03 -1.70 5.29 84.86 0.45 -1.25 16 7 N -0.95 -61.73 13.97 21.65 0.30 -61.43 16 8 Si 0.94 44.18 25.10 68.60 1.72 45.90 16 9 H -0.26 -11.02 6.68 99.48 0.66 -10.36 16 10 H -0.31 -14.64 7.11 99.48 0.71 -13.93 16 11 H -0.24 -10.20 7.11 99.48 0.71 -9.49 16 12 C 0.12 4.95 3.55 85.63 0.30 5.26 16 13 C 0.48 20.55 7.74 87.66 0.68 21.23 16 14 O -0.57 -29.71 16.01 -3.04 -0.05 -29.76 16 15 N -0.63 -19.80 2.87 -846.76 -2.43 -22.23 16 16 C 0.07 1.56 10.24 127.77 1.31 2.86 16 17 C 0.15 4.07 5.69 86.38 0.49 4.56 16 18 C -0.18 -5.16 6.01 -10.79 -0.06 -5.23 16 19 C -0.20 -6.21 10.18 30.59 0.31 -5.90 16 20 C -0.14 -2.94 10.25 30.59 0.31 -2.63 16 21 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.03 1.49 8.04 -2.39 -0.02 1.47 16 25 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 26 H 0.26 15.98 8.31 -92.71 -0.77 15.20 16 27 H 0.11 3.61 8.04 -2.39 -0.02 3.59 16 28 H 0.07 3.04 2.63 -2.39 -0.01 3.04 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.55 8.07 -2.39 -0.02 1.53 16 31 H 0.06 1.46 6.44 -2.39 -0.02 1.44 16 32 H 0.12 2.15 8.07 -2.39 -0.02 2.13 16 33 H 0.06 1.89 7.15 -2.39 -0.02 1.87 16 34 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 35 H 0.08 2.70 8.03 -2.39 -0.02 2.68 16 36 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -78.75 311.93 5.33 -73.42 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.97 Total: 18.36 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 5.91 Total: 6.27 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -3.23 Total: -114.20 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.76 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.72 Total: 45.90 kcal Total: -78.75 5.33 -73.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355664001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.720 kcal (2) G-P(sol) polarization free energy of solvation -78.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds