Wall clock time and date at job start Mon Mar 30 2020 17:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47317 * 59.99960 * 4 3 2 6 6 O 1.42905 * 109.46728 * 59.99947 * 5 4 3 7 7 C 1.42903 * 113.99896 * 90.00451 * 6 5 4 8 8 C 1.52999 * 109.47137 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46947 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46947 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47085 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00266 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00105 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99711 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47298 * 60.00263 * 15 13 11 17 17 H 1.48503 * 109.46928 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47157 * 299.99920 * 15 13 11 19 19 C 1.53005 * 109.47159 * 300.00546 * 5 4 3 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 5 4 21 21 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 22 22 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 24 24 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 25 25 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 26 26 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 27 27 H 1.08996 * 109.47853 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 29 29 H 1.09000 * 109.47486 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.46799 * 299.99649 * 7 6 5 31 31 H 1.09005 * 109.47176 * 59.99740 * 7 6 5 32 32 H 1.08994 * 109.47335 * 299.99920 * 8 7 6 33 33 H 1.09005 * 109.47114 * 59.99930 * 8 7 6 34 34 H 1.09002 * 109.47110 * 299.99951 * 9 8 7 35 35 H 1.08994 * 109.47496 * 60.00327 * 9 8 7 36 36 H 1.08994 * 109.47335 * 300.00184 * 10 9 8 37 37 H 1.09000 * 109.47161 * 60.00673 * 10 9 8 38 38 H 0.96997 * 119.99685 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.46935 * 299.99411 * 19 5 4 40 40 H 1.09001 * 109.46812 * 179.97438 * 19 5 4 41 41 H 1.08993 * 109.47194 * 179.97438 * 20 19 5 42 42 H 1.09002 * 109.46695 * 59.99734 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0795 0.7215 -1.2502 6 8 3.6026 1.3954 -2.4167 7 6 4.4745 2.4232 -2.8915 8 6 3.8672 3.0722 -4.1368 9 6 4.8005 4.1730 -4.6447 10 6 4.1929 4.8225 -5.8896 11 6 5.1119 5.9072 -6.3896 12 1 6.0370 6.1126 -5.8715 13 6 4.7717 6.6376 -7.5085 14 7 3.6454 6.3872 -8.1397 15 14 5.9111 7.9816 -8.1286 16 1 7.2304 7.3927 -8.4722 17 1 5.3213 8.6121 -9.3369 18 1 6.0878 9.0082 -7.0702 19 6 3.5694 -0.7210 -1.2503 20 6 2.0394 -0.7211 -1.2496 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6765 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.9333 2.4702 -0.0002 28 1 3.9337 0.9286 0.8891 29 1 5.1695 0.7211 -1.2504 30 1 4.6042 3.1771 -2.1149 31 1 5.4429 1.9906 -3.1432 32 1 3.7379 2.3182 -4.9131 33 1 2.8988 3.5048 -3.8854 34 1 4.9294 4.9270 -3.8682 35 1 5.7691 3.7409 -4.8959 36 1 4.0636 4.0688 -6.6663 37 1 3.2245 5.2548 -5.6380 38 1 3.4062 6.9008 -8.9271 39 1 3.9331 -1.2350 -0.3605 40 1 3.9321 -1.2345 -2.1407 41 1 1.6761 -1.7487 -1.2501 42 1 1.6758 -0.2070 -2.1393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385358958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:06 Heat of formation + Delta-G solvation = -102.202069 kcal Electronic energy + Delta-G solvation = -17303.936990 eV Core-core repulsion = 14667.824261 eV Total energy + Delta-G solvation = -2636.112729 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.183 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.47925 -36.72778 -34.51146 -32.49161 -31.53025 -30.86452 -28.53045 -26.15162 -24.67389 -22.79398 -21.66269 -21.31160 -20.07418 -19.50617 -16.28905 -16.13333 -15.92548 -15.51951 -14.50888 -14.41765 -14.30595 -13.87589 -13.55928 -13.15218 -12.84447 -12.44026 -12.33251 -11.91847 -11.79473 -11.71220 -11.48141 -11.25567 -11.12177 -11.00786 -10.71626 -10.55456 -10.52149 -10.34965 -10.22627 -10.07357 -9.63336 -9.27599 -9.24381 -9.02383 -8.31060 -5.96223 -3.98676 3.35293 3.39453 3.41933 3.83567 4.48901 4.59124 4.64140 4.70005 5.04668 5.05780 5.18394 5.31017 5.38925 5.41875 5.43547 5.46049 5.55262 5.59119 5.65105 5.73302 5.77951 5.83065 5.91920 5.94152 6.07693 6.15321 6.17884 6.19311 6.25552 6.26519 6.47910 6.53036 6.82777 6.96414 7.14827 7.49481 7.72119 7.87809 8.04599 8.46827 9.08476 9.64962 11.15142 Molecular weight = 240.18amu Principal moments of inertia in cm(-1) A = 0.046013 B = 0.003494 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.382047 B = 8012.769787 C = 8193.723683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.109 4.109 4 C -0.141 4.141 5 C 0.088 3.912 6 O -0.377 6.377 7 C 0.063 3.937 8 C -0.115 4.115 9 C -0.108 4.108 10 C 0.021 3.979 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.115 4.115 20 C -0.111 4.111 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 -14.018 17.336 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.147 4.147 4 C -0.178 4.178 5 C 0.030 3.970 6 O -0.296 6.296 7 C -0.014 4.014 8 C -0.153 4.153 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.152 4.152 20 C -0.148 4.148 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.561 -14.004 17.088 22.241 hybrid contribution 0.893 0.891 -0.255 1.287 sum -1.667 -13.113 16.833 21.403 Atomic orbital electron populations 1.21826 0.95447 1.01367 1.01819 1.21117 0.95330 0.96329 0.98095 1.21478 0.94811 0.96261 1.02136 1.22011 0.97042 1.00949 0.97834 1.22012 0.96956 0.92256 0.85806 1.87939 1.47231 1.50893 1.43576 1.22703 0.92808 0.89298 0.96556 1.21617 1.00186 0.98446 0.95023 1.21573 0.97650 0.95574 0.99734 1.19084 0.96088 0.95121 0.91263 1.21246 1.05846 1.17684 1.11216 0.92795 1.25036 0.95276 0.97457 0.96753 1.69961 1.22721 1.41062 1.19770 0.86659 0.80995 0.82136 0.78204 1.20270 1.21289 1.20261 1.21615 0.96792 0.94817 1.01974 1.21502 0.94875 0.99799 0.98637 0.92442 0.92981 0.92983 0.91870 0.90863 0.92572 0.91838 0.91626 0.92651 0.93883 0.93878 0.91799 0.91815 0.93417 0.93410 0.96557 0.96560 0.92972 0.91266 0.91435 0.92508 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.09 -0.85 2.72 -90.62 -0.25 -1.10 16 3 C -0.11 -1.15 5.06 -26.73 -0.14 -1.29 16 4 C -0.14 -1.46 5.63 -26.73 -0.15 -1.61 16 5 C 0.09 1.01 2.92 -26.73 -0.08 0.93 16 6 O -0.38 -5.50 8.64 -35.23 -0.30 -5.80 16 7 C 0.06 0.95 5.75 37.16 0.21 1.16 16 8 C -0.12 -2.08 5.58 -26.73 -0.15 -2.23 16 9 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 10 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 15 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.11 -1.14 5.66 -26.73 -0.15 -1.30 16 20 C -0.11 -1.12 5.06 -26.73 -0.14 -1.25 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.60 7.79 -51.93 -0.40 0.20 16 30 H 0.04 0.62 7.87 -51.93 -0.41 0.21 16 31 H 0.04 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -30.26 330.21 -9.11 -39.37 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -8.32 Total: -5.24 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -1.18 Total: -23.52 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.74 Total: -26.74 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.30 Total: -5.80 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.26 -9.11 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385358958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.833 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds