Wall clock time and date at job start Mon Mar 30 2020 17:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47317 * 59.99960 * 4 3 2 6 6 O 1.42905 * 109.46728 * 59.99947 * 5 4 3 7 7 C 1.42903 * 113.99896 * 90.00451 * 6 5 4 8 8 C 1.52999 * 109.47137 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46947 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46947 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47085 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00266 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00105 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99711 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47298 * 60.00263 * 15 13 11 17 17 H 1.48503 * 109.46928 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47157 * 299.99920 * 15 13 11 19 19 C 1.53005 * 109.47159 * 300.00546 * 5 4 3 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 5 4 21 21 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 22 22 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 24 24 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 25 25 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 26 26 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 27 27 H 1.08996 * 109.47853 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 29 29 H 1.09000 * 109.47486 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.46799 * 299.99649 * 7 6 5 31 31 H 1.09005 * 109.47176 * 59.99740 * 7 6 5 32 32 H 1.08994 * 109.47335 * 299.99920 * 8 7 6 33 33 H 1.09005 * 109.47114 * 59.99930 * 8 7 6 34 34 H 1.09002 * 109.47110 * 299.99951 * 9 8 7 35 35 H 1.08994 * 109.47496 * 60.00327 * 9 8 7 36 36 H 1.08994 * 109.47335 * 300.00184 * 10 9 8 37 37 H 1.09000 * 109.47161 * 60.00673 * 10 9 8 38 38 H 0.96997 * 119.99685 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.46935 * 299.99411 * 19 5 4 40 40 H 1.09001 * 109.46812 * 179.97438 * 19 5 4 41 41 H 1.08993 * 109.47194 * 179.97438 * 20 19 5 42 42 H 1.09002 * 109.46695 * 59.99734 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0795 0.7215 -1.2502 6 8 3.6026 1.3954 -2.4167 7 6 4.4745 2.4232 -2.8915 8 6 3.8672 3.0722 -4.1368 9 6 4.8005 4.1730 -4.6447 10 6 4.1929 4.8225 -5.8896 11 6 5.1119 5.9072 -6.3896 12 1 6.0370 6.1126 -5.8715 13 6 4.7717 6.6376 -7.5085 14 7 3.6454 6.3872 -8.1397 15 14 5.9111 7.9816 -8.1286 16 1 7.2304 7.3927 -8.4722 17 1 5.3213 8.6121 -9.3369 18 1 6.0878 9.0082 -7.0702 19 6 3.5694 -0.7210 -1.2503 20 6 2.0394 -0.7211 -1.2496 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6765 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.9333 2.4702 -0.0002 28 1 3.9337 0.9286 0.8891 29 1 5.1695 0.7211 -1.2504 30 1 4.6042 3.1771 -2.1149 31 1 5.4429 1.9906 -3.1432 32 1 3.7379 2.3182 -4.9131 33 1 2.8988 3.5048 -3.8854 34 1 4.9294 4.9270 -3.8682 35 1 5.7691 3.7409 -4.8959 36 1 4.0636 4.0688 -6.6663 37 1 3.2245 5.2548 -5.6380 38 1 3.4062 6.9008 -8.9271 39 1 3.9331 -1.2350 -0.3605 40 1 3.9321 -1.2345 -2.1407 41 1 1.6761 -1.7487 -1.2501 42 1 1.6758 -0.2070 -2.1393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385358958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:05 Heat of formation + Delta-G solvation = -117.529549 kcal Electronic energy + Delta-G solvation = -17304.601639 eV Core-core repulsion = 14667.824261 eV Total energy + Delta-G solvation = -2636.777378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.183 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.38944 -37.81677 -36.26004 -34.35584 -32.59775 -31.66586 -30.30870 -27.05669 -26.45424 -23.71635 -23.27616 -22.18729 -21.69806 -20.42592 -18.44716 -17.24727 -16.97507 -16.65903 -16.46371 -15.64465 -15.13500 -14.80630 -14.79742 -14.37487 -14.07985 -13.97329 -13.59190 -13.24219 -13.06960 -12.93878 -12.66443 -12.46378 -12.45342 -12.31466 -12.24334 -12.01497 -11.91722 -11.48566 -11.36049 -11.29496 -11.11613 -11.07727 -10.87559 -10.55726 -10.26129 -8.20252 -6.32289 1.39620 1.43407 1.51363 2.40589 2.78310 3.12414 3.79816 3.83185 3.89767 4.06474 4.19687 4.24883 4.29619 4.41204 4.46615 4.53207 4.60362 4.62388 4.66089 4.71091 4.81390 4.86886 4.93302 5.00798 5.03002 5.12868 5.17041 5.18707 5.23863 5.28259 5.34325 5.37179 5.42800 5.47051 5.52228 5.67559 5.74353 5.84857 6.23713 6.42814 6.84914 7.37096 8.91699 Molecular weight = 240.18amu Principal moments of inertia in cm(-1) A = 0.046013 B = 0.003494 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.382047 B = 8012.769787 C = 8193.723683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.110 4.110 4 C -0.139 4.139 5 C 0.078 3.922 6 O -0.395 6.395 7 C 0.073 3.927 8 C -0.108 4.108 9 C -0.094 4.094 10 C 0.022 3.978 11 C -0.547 4.547 12 H 0.062 0.938 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.968 3.032 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.265 1.265 19 C -0.113 4.113 20 C -0.110 4.110 21 H 0.041 0.959 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.056 0.944 36 H -0.011 1.011 37 H -0.011 1.011 38 H 0.264 0.736 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 -14.425 18.988 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.148 4.148 4 C -0.176 4.176 5 C 0.021 3.979 6 O -0.315 6.315 7 C -0.004 4.004 8 C -0.145 4.145 9 C -0.132 4.132 10 C -0.015 4.015 11 C -0.584 4.584 12 H 0.081 0.919 13 C -0.201 4.201 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.150 4.150 20 C -0.148 4.148 21 H 0.060 0.940 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.008 0.992 37 H 0.007 0.993 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.119 -14.423 18.758 23.689 hybrid contribution 0.387 0.975 -0.762 1.296 sum -0.732 -13.448 17.996 22.478 Atomic orbital electron populations 1.21823 0.95185 1.01954 1.01460 1.21115 0.95596 0.95522 0.98323 1.21472 0.95180 0.96951 1.01162 1.22013 0.96696 1.00732 0.98176 1.22300 0.97707 0.92896 0.84997 1.87919 1.47587 1.50868 1.45136 1.22461 0.92822 0.89859 0.95232 1.21433 0.99203 0.97446 0.96449 1.21352 0.98095 0.96352 0.97372 1.19018 0.95059 0.94387 0.93020 1.21712 1.06498 1.18443 1.11790 0.91932 1.26055 0.96974 1.00172 0.96920 1.70108 1.24721 1.42408 1.20301 0.85453 0.78812 0.78750 0.77744 1.19024 1.20822 1.19022 1.21652 0.96474 0.93932 1.02968 1.21489 0.95216 1.00276 0.97821 0.93982 0.91924 0.92187 0.90073 0.93752 0.91632 0.92562 0.89287 0.91640 0.92958 0.92695 0.92715 0.92889 0.92643 0.92538 0.99211 0.99271 0.92743 0.88731 0.91924 0.91178 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.19 71.98 0.66 -1.74 16 2 C -0.09 -1.49 2.72 -10.79 -0.03 -1.52 16 3 C -0.11 -2.20 5.06 30.59 0.15 -2.05 16 4 C -0.14 -2.61 5.63 30.59 0.17 -2.44 16 5 C 0.08 1.67 2.92 30.60 0.09 1.76 16 6 O -0.40 -11.35 8.64 -148.98 -1.29 -12.64 16 7 C 0.07 2.14 5.75 71.98 0.41 2.55 16 8 C -0.11 -3.95 5.58 30.59 0.17 -3.78 16 9 C -0.09 -3.99 5.15 30.59 0.16 -3.83 16 10 C 0.02 1.23 4.97 29.85 0.15 1.37 16 11 C -0.55 -32.01 9.11 25.60 0.23 -31.77 16 12 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 13 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 14 N -0.94 -58.50 13.29 21.45 0.28 -58.22 16 15 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 C -0.11 -2.03 5.66 30.60 0.17 -1.86 16 20 C -0.11 -2.11 5.06 30.59 0.15 -1.95 16 21 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 22 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.04 1.13 7.68 -2.39 -0.02 1.12 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.14 7.87 -2.39 -0.02 1.12 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.26 7.79 -2.39 -0.02 1.25 16 30 H 0.05 1.44 7.87 -2.39 -0.02 1.42 16 31 H 0.05 1.49 8.09 -2.38 -0.02 1.47 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 36 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.04 1.12 7.68 -2.39 -0.02 1.10 16 Total: -1.00 -65.66 330.21 4.91 -60.75 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.92 Total: 8.17 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 2.96 Total: -45.02 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.28 Total: -58.22 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -1.29 Total: -12.64 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.66 4.91 -60.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385358958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.784 kcal (2) G-P(sol) polarization free energy of solvation -65.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds