Wall clock time and date at job start Mon Mar 30 2020 17:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46870 * 2 1 4 4 C 1.53002 * 109.47346 * 119.99817 * 2 1 3 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47165 * 300.00293 * 5 4 2 7 7 C 1.52999 * 109.47592 * 60.00300 * 6 5 4 8 8 C 1.52997 * 109.46975 * 240.00222 * 2 1 3 9 9 H 1.09000 * 109.47140 * 299.99612 * 8 2 1 10 10 O 1.42906 * 109.47139 * 60.00085 * 8 2 1 11 11 C 1.42903 * 113.99577 * 210.00129 * 10 8 2 12 12 C 1.52993 * 109.47005 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47352 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.47392 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47438 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99491 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00289 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99721 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99847 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47084 * 90.00029 * 19 17 15 21 21 H 1.48507 * 109.46909 * 209.99505 * 19 17 15 22 22 H 1.48497 * 109.47353 * 329.99810 * 19 17 15 23 23 H 1.09004 * 109.47368 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47108 * 299.99894 * 1 2 3 25 25 H 1.09001 * 109.47367 * 59.99592 * 1 2 3 26 26 H 1.08992 * 109.46974 * 300.00318 * 4 2 1 27 27 H 1.08996 * 109.46550 * 60.00424 * 4 2 1 28 28 H 1.09000 * 109.47054 * 60.00300 * 5 4 2 29 29 H 1.09001 * 109.46997 * 180.02562 * 5 4 2 30 30 H 1.09000 * 109.47140 * 299.99954 * 6 5 4 31 31 H 1.09002 * 109.47045 * 180.02562 * 6 5 4 32 32 H 1.08993 * 109.47839 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47160 * 59.99666 * 7 6 5 34 34 H 1.08999 * 109.46805 * 299.99656 * 11 10 8 35 35 H 1.09000 * 109.47333 * 59.99541 * 11 10 8 36 36 H 1.09004 * 109.47014 * 299.99984 * 12 11 10 37 37 H 1.09000 * 109.47451 * 59.99612 * 12 11 10 38 38 H 1.08999 * 109.46805 * 299.99867 * 13 12 11 39 39 H 1.09007 * 109.46939 * 59.99954 * 13 12 11 40 40 H 1.09004 * 109.46663 * 300.00269 * 14 13 12 41 41 H 1.08995 * 109.46821 * 59.99792 * 14 13 12 42 42 H 0.97002 * 119.99467 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 6 4.0794 -1.4433 -0.0004 7 6 3.5695 -0.7221 -1.2497 8 6 2.0399 -0.7212 -1.2493 9 1 1.6766 -1.7489 -1.2493 10 8 1.5636 -0.0475 -2.4160 11 6 1.3698 -0.9041 -3.5433 12 6 0.8620 -0.0804 -4.7284 13 6 0.6551 -0.9974 -5.9356 14 6 0.1467 -0.1737 -7.1206 15 6 -0.0577 -1.0770 -8.3094 16 1 0.1535 -2.1330 -8.2277 17 6 -0.5142 -0.5553 -9.5012 18 7 -0.7719 0.7305 -9.6003 19 14 -0.7668 -1.6749 -10.9749 20 1 -2.1540 -2.2050 -10.9618 21 1 -0.5428 -0.9055 -12.2252 22 1 0.1952 -2.8042 -10.9094 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6767 -0.2074 2.1392 27 1 1.6767 -1.7488 1.2492 28 1 3.9337 0.3058 1.2486 29 1 3.9334 -1.2359 2.1386 30 1 3.7158 -2.4708 -0.0002 31 1 5.1694 -1.4440 -0.0004 32 1 3.9320 -1.2363 -2.1396 33 1 3.9331 0.3055 -1.2499 34 1 2.3161 -1.3758 -3.8081 35 1 0.6380 -1.6725 -3.2942 36 1 -0.0842 0.3917 -4.4639 37 1 1.5942 0.6878 -4.9773 38 1 1.6016 -1.4691 -6.1999 39 1 -0.0769 -1.7658 -5.6869 40 1 -0.7998 0.2977 -6.8558 41 1 0.8784 0.5949 -7.3693 42 1 -1.0934 1.0974 -10.4387 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385384080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:13 Heat of formation + Delta-G solvation = -103.127269 kcal Electronic energy + Delta-G solvation = -17235.857616 eV Core-core repulsion = 14599.704768 eV Total energy + Delta-G solvation = -2636.152849 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.183 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.51586 -36.77183 -34.47112 -32.75353 -32.26767 -30.12061 -28.43703 -26.29268 -24.71117 -22.55066 -21.69202 -21.38893 -20.19361 -19.75512 -16.61429 -16.19906 -15.64865 -15.30811 -14.69130 -14.54068 -14.42965 -13.91664 -13.45739 -13.31687 -12.91863 -12.45456 -12.37395 -12.05251 -11.73960 -11.69963 -11.46106 -11.19335 -11.04995 -11.04581 -10.81595 -10.58288 -10.55010 -10.45416 -10.34782 -10.25849 -9.63611 -9.27510 -9.23338 -9.01290 -8.31355 -5.96378 -3.98726 3.33888 3.39835 3.43320 3.75137 4.48022 4.49775 4.53140 4.72648 4.94068 4.99719 5.14565 5.24553 5.28045 5.32327 5.38952 5.43744 5.48818 5.52347 5.62717 5.73255 5.78444 5.82789 5.86096 5.91088 5.95130 6.06477 6.11250 6.14836 6.18243 6.29543 6.30719 6.52788 6.82638 6.96334 7.14759 7.48814 7.72381 7.87803 8.04568 8.46886 9.08651 9.65012 11.15035 Molecular weight = 240.18amu Principal moments of inertia in cm(-1) A = 0.052617 B = 0.003386 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.020466 B = 8267.840568 C = 8511.120402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.143 4.143 8 C 0.095 3.905 9 H 0.056 0.944 10 O -0.381 6.381 11 C 0.064 3.936 12 C -0.116 4.116 13 C -0.108 4.108 14 C 0.021 3.979 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.183 -3.306 22.054 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.181 4.181 8 C 0.037 3.963 9 H 0.074 0.926 10 O -0.300 6.300 11 C -0.012 4.012 12 C -0.153 4.153 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.085 -2.977 21.917 23.226 hybrid contribution -0.083 -0.848 -0.940 1.268 sum 7.002 -3.825 20.977 22.443 Atomic orbital electron populations 1.21773 0.94685 1.01682 1.02151 1.21186 0.96228 1.00208 0.92999 0.90544 1.21588 0.95432 1.00720 0.97268 1.21570 0.95721 1.00923 0.97706 1.21496 1.00328 0.99310 0.94334 1.22044 0.96312 1.01668 0.98030 1.22047 0.92748 0.95641 0.85898 0.92602 1.87920 1.86303 1.35827 1.19993 1.22698 0.98901 0.93256 0.86385 1.21628 1.01391 0.99063 0.93257 1.21578 1.00149 0.98061 0.94746 1.19089 0.96297 0.95077 0.91119 1.21279 1.43886 0.94665 0.96063 0.92741 1.25036 0.95648 0.95011 0.98859 1.69972 1.45729 1.11637 1.26173 0.86599 0.78477 0.80685 0.82264 1.20687 1.21229 1.19901 0.93112 0.92954 0.91492 0.91579 0.91943 0.91839 0.92026 0.92050 0.91834 0.91737 0.91161 0.93864 0.93823 0.91768 0.91772 0.93397 0.93400 0.96554 0.96543 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.05 37.16 0.34 -1.17 16 2 C -0.09 -0.90 2.46 -90.62 -0.22 -1.12 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -0.92 5.20 -26.73 -0.14 -1.06 16 5 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 6 C -0.12 -0.99 5.92 -26.73 -0.16 -1.14 16 7 C -0.14 -1.51 5.54 -26.76 -0.15 -1.66 16 8 C 0.09 1.12 2.04 -26.76 -0.05 1.06 16 9 H 0.06 0.65 7.79 -51.93 -0.40 0.24 16 10 O -0.38 -5.72 9.31 -35.23 -0.33 -6.04 16 11 C 0.06 0.98 5.75 37.15 0.21 1.20 16 12 C -0.12 -2.11 5.58 -26.74 -0.15 -2.26 16 13 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 16 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 19 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.71 7.87 -51.93 -0.41 0.31 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.63 7.87 -51.93 -0.41 0.22 16 35 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -30.39 331.23 -9.14 -39.53 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -8.35 Total: -5.54 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -1.17 Total: -23.14 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.74 Total: -26.75 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.33 Total: -6.04 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.39 -9.14 -39.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385384080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.602 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds