Wall clock time and date at job start Mon Mar 30 2020 17:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47853 * 110.99991 * 2 1 4 4 C 1.54908 * 104.79674 * 146.36282 * 3 2 1 5 5 C 1.55140 * 101.65172 * 322.93467 * 4 3 2 6 6 H 1.09004 * 110.85406 * 277.19367 * 5 4 3 7 7 C 1.50701 * 110.70321 * 154.03573 * 5 4 3 8 8 O 1.21285 * 120.00364 * 4.94062 * 7 5 4 9 9 N 1.34776 * 119.99977 * 184.94490 * 7 5 4 10 10 C 1.46506 * 120.00027 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47033 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46843 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00516 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99783 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99707 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99956 * 180.27458 * 15 13 12 18 18 H 1.48497 * 109.47172 * 179.72730 * 17 15 13 19 19 H 1.48506 * 109.47132 * 299.72429 * 17 15 13 20 20 H 1.48501 * 109.47173 * 59.72550 * 17 15 13 21 21 C 1.47443 * 111.00341 * 120.84429 * 2 1 3 22 22 H 1.09007 * 109.47278 * 299.15160 * 1 2 3 23 23 H 1.08995 * 109.47893 * 59.15440 * 1 2 3 24 24 H 1.09006 * 109.47016 * 179.16008 * 1 2 3 25 25 H 1.08994 * 110.37630 * 265.20014 * 3 2 1 26 26 H 1.08999 * 110.36961 * 27.53805 * 3 2 1 27 27 H 1.08994 * 110.99135 * 204.83513 * 4 3 2 28 28 H 1.09001 * 110.98599 * 81.02247 * 4 3 2 29 29 H 0.96996 * 120.00282 * 359.97438 * 9 7 5 30 30 H 1.08998 * 109.47293 * 59.99931 * 10 9 7 31 31 H 1.08997 * 109.46855 * 300.00178 * 10 9 7 32 32 H 1.09006 * 109.46826 * 60.00209 * 11 10 9 33 33 H 1.08997 * 109.47123 * 300.00144 * 11 10 9 34 34 H 1.09001 * 109.46361 * 60.00532 * 12 11 10 35 35 H 1.08997 * 109.46991 * 300.00423 * 12 11 10 36 36 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.89148 * 117.33797 * 21 2 1 38 38 H 1.08997 * 110.02117 * 356.22492 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9158 0.2822 1.9314 6 1 2.3753 0.7724 2.7411 7 6 4.1383 -0.4230 2.4598 8 8 5.2414 -0.0917 2.0797 9 7 4.0060 -1.4219 3.3549 10 6 5.1944 -2.1079 3.8682 11 6 4.7689 -3.1908 4.8617 12 6 6.0101 -3.9076 5.3972 13 6 5.5909 -4.9747 6.3753 14 1 4.5441 -5.1262 6.5935 15 6 6.5440 -5.7569 6.9925 16 7 7.8188 -5.5714 6.7280 17 14 6.0241 -7.0848 8.1991 18 1 7.2283 -7.7836 8.7154 19 1 5.2884 -6.4650 9.3305 20 1 5.1421 -8.0613 7.5108 21 6 1.9974 -0.7057 1.1818 22 1 -0.3634 0.5006 0.8975 23 1 -0.3635 0.5269 -0.8822 24 1 -0.3633 -1.0276 -0.0151 25 1 2.2146 1.7040 -1.0182 26 1 1.2889 2.0592 0.4724 27 1 3.5495 2.2721 1.2639 28 1 4.1301 0.9283 0.2242 29 1 3.1239 -1.6867 3.6592 30 1 5.8408 -1.3882 4.3705 31 1 5.7354 -2.5660 3.0402 32 1 4.1224 -3.9107 4.3596 33 1 4.2282 -2.7322 5.6895 34 1 6.6568 -3.1880 5.8991 35 1 6.5504 -4.3662 4.5691 36 1 8.4894 -6.1215 7.1625 37 1 2.5697 -1.5784 0.8674 38 1 1.1772 -1.0142 1.8299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386264866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:24 Heat of formation + Delta-G solvation = -53.032031 kcal Electronic energy + Delta-G solvation = -16846.134806 eV Core-core repulsion = 14108.613907 eV Total energy + Delta-G solvation = -2737.520900 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.20464 -38.24117 -35.42680 -33.34616 -32.43982 -31.21014 -29.37871 -26.81767 -25.95832 -23.45462 -21.95030 -21.25812 -20.67858 -19.60307 -17.30822 -16.52603 -16.29187 -15.68809 -15.15857 -14.84394 -14.46059 -14.42748 -13.85050 -13.65020 -13.51190 -12.71031 -12.30958 -12.11178 -11.95981 -11.87309 -11.71443 -11.50224 -11.39454 -11.04880 -10.89089 -10.74056 -10.62865 -9.87636 -9.85496 -9.36699 -9.13372 -8.79475 -8.65635 -8.37813 -6.02498 -4.05836 2.73660 3.31411 3.33326 3.36383 3.38822 3.70255 4.22284 4.42104 4.44439 4.69715 4.99673 5.01346 5.08961 5.09419 5.19484 5.30916 5.33133 5.54940 5.57738 5.68199 5.74001 5.76831 5.79263 6.04996 6.15124 6.47279 6.58532 6.59168 6.71482 6.81800 6.99118 7.62262 7.68938 7.75097 7.96030 8.35135 8.39024 9.00629 9.58324 11.08768 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.047703 B = 0.003620 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.826195 B = 7733.779222 C = 8188.090204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.533 5.533 3 C 0.040 3.960 4 C -0.108 4.108 5 C -0.134 4.134 6 H 0.100 0.900 7 C 0.519 3.481 8 O -0.541 6.541 9 N -0.725 5.725 10 C 0.115 3.885 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.287 1.287 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.052 3.948 22 H 0.027 0.973 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.398 0.602 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.085 0.915 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.770 12.655 -10.961 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.157 4.157 6 H 0.118 0.882 7 C 0.304 3.696 8 O -0.418 6.418 9 N -0.375 5.375 10 C -0.007 4.007 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.213 1.213 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.076 4.076 22 H 0.046 0.954 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.231 0.769 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.626 12.549 -11.643 21.879 hybrid contribution -0.971 -0.523 1.688 2.017 sum -14.597 12.026 -9.954 21.373 Atomic orbital electron populations 1.22569 0.87482 1.02286 1.00653 1.63579 1.08039 1.14616 1.39504 1.23127 0.95563 0.89176 1.00919 1.22594 0.97910 0.98530 0.95614 1.22606 0.95740 0.97841 0.99475 0.88167 1.20250 0.90329 0.80069 0.78994 1.90700 1.27350 1.65036 1.58672 1.46234 1.11008 1.35981 1.44317 1.21659 0.86543 0.94905 0.97609 1.21889 1.01652 0.95775 0.96548 1.19025 0.91465 0.94868 0.96004 1.21170 0.92956 1.17409 1.24684 0.92702 1.25033 0.94947 0.97514 0.96956 1.69958 0.99957 1.40127 1.43229 0.86635 0.77916 0.81909 0.81393 1.21257 1.20256 1.20219 1.22823 0.97401 0.97063 0.90363 0.95396 0.91281 0.91175 0.89784 0.93410 0.90285 0.89103 0.76892 0.91791 0.91715 0.92713 0.92776 0.96295 0.96255 0.92847 0.89714 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.12 60.06 0.55 0.68 16 2 N -0.53 -5.14 5.44 -239.52 -1.30 -6.44 16 3 C 0.04 0.34 6.73 -2.29 -0.02 0.33 16 4 C -0.11 -1.11 6.13 -24.59 -0.15 -1.26 16 5 C -0.13 -1.42 3.34 -89.95 -0.30 -1.72 16 6 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 7 C 0.52 7.56 7.02 -10.99 -0.08 7.48 16 8 O -0.54 -10.12 15.76 5.55 0.09 -10.03 16 9 N -0.73 -10.23 5.50 -60.29 -0.33 -10.56 16 10 C 0.12 2.03 5.67 -4.04 -0.02 2.01 16 11 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 C 0.05 0.50 6.42 -2.84 -0.02 0.49 16 22 H 0.03 0.19 8.10 -51.93 -0.42 -0.23 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.35 7.78 -51.93 -0.40 -0.05 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.09 1.13 7.49 -51.93 -0.39 0.74 16 29 H 0.40 4.48 8.46 -40.82 -0.35 4.13 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.08 0.95 7.81 -51.93 -0.41 0.55 16 38 H 0.06 0.51 7.59 -51.93 -0.39 0.12 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -32.23 312.94 -8.39 -40.63 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.55 Total: -1.19 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.73 Total: -7.43 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.90 Total: -43.13 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.23 -8.39 -40.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386264866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.403 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds