Wall clock time and date at job start Mon Mar 30 2020 17:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47853 * 110.99991 * 2 1 4 4 C 1.54908 * 104.79674 * 146.36282 * 3 2 1 5 5 C 1.55140 * 101.65172 * 322.93467 * 4 3 2 6 6 H 1.09004 * 110.85406 * 277.19367 * 5 4 3 7 7 C 1.50701 * 110.70321 * 154.03573 * 5 4 3 8 8 O 1.21285 * 120.00364 * 4.94062 * 7 5 4 9 9 N 1.34776 * 119.99977 * 184.94490 * 7 5 4 10 10 C 1.46506 * 120.00027 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47033 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46843 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00516 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99783 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99707 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99956 * 180.27458 * 15 13 12 18 18 H 1.48497 * 109.47172 * 179.72730 * 17 15 13 19 19 H 1.48506 * 109.47132 * 299.72429 * 17 15 13 20 20 H 1.48501 * 109.47173 * 59.72550 * 17 15 13 21 21 C 1.47443 * 111.00341 * 120.84429 * 2 1 3 22 22 H 1.09007 * 109.47278 * 299.15160 * 1 2 3 23 23 H 1.08995 * 109.47893 * 59.15440 * 1 2 3 24 24 H 1.09006 * 109.47016 * 179.16008 * 1 2 3 25 25 H 1.08994 * 110.37630 * 265.20014 * 3 2 1 26 26 H 1.08999 * 110.36961 * 27.53805 * 3 2 1 27 27 H 1.08994 * 110.99135 * 204.83513 * 4 3 2 28 28 H 1.09001 * 110.98599 * 81.02247 * 4 3 2 29 29 H 0.96996 * 120.00282 * 359.97438 * 9 7 5 30 30 H 1.08998 * 109.47293 * 59.99931 * 10 9 7 31 31 H 1.08997 * 109.46855 * 300.00178 * 10 9 7 32 32 H 1.09006 * 109.46826 * 60.00209 * 11 10 9 33 33 H 1.08997 * 109.47123 * 300.00144 * 11 10 9 34 34 H 1.09001 * 109.46361 * 60.00532 * 12 11 10 35 35 H 1.08997 * 109.46991 * 300.00423 * 12 11 10 36 36 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.89148 * 117.33797 * 21 2 1 38 38 H 1.08997 * 110.02117 * 356.22492 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9158 0.2822 1.9314 6 1 2.3753 0.7724 2.7411 7 6 4.1383 -0.4230 2.4598 8 8 5.2414 -0.0917 2.0797 9 7 4.0060 -1.4219 3.3549 10 6 5.1944 -2.1079 3.8682 11 6 4.7689 -3.1908 4.8617 12 6 6.0101 -3.9076 5.3972 13 6 5.5909 -4.9747 6.3753 14 1 4.5441 -5.1262 6.5935 15 6 6.5440 -5.7569 6.9925 16 7 7.8188 -5.5714 6.7280 17 14 6.0241 -7.0848 8.1991 18 1 7.2283 -7.7836 8.7154 19 1 5.2884 -6.4650 9.3305 20 1 5.1421 -8.0613 7.5108 21 6 1.9974 -0.7057 1.1818 22 1 -0.3634 0.5006 0.8975 23 1 -0.3635 0.5269 -0.8822 24 1 -0.3633 -1.0276 -0.0151 25 1 2.2146 1.7040 -1.0182 26 1 1.2889 2.0592 0.4724 27 1 3.5495 2.2721 1.2639 28 1 4.1301 0.9283 0.2242 29 1 3.1239 -1.6867 3.6592 30 1 5.8408 -1.3882 4.3705 31 1 5.7354 -2.5660 3.0402 32 1 4.1224 -3.9107 4.3596 33 1 4.2282 -2.7322 5.6895 34 1 6.6568 -3.1880 5.8991 35 1 6.5504 -4.3662 4.5691 36 1 8.4894 -6.1215 7.1625 37 1 2.5697 -1.5784 0.8674 38 1 1.1772 -1.0142 1.8299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386264866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:23 Heat of formation + Delta-G solvation = -76.596845 kcal Electronic energy + Delta-G solvation = -16847.156653 eV Core-core repulsion = 14108.613907 eV Total energy + Delta-G solvation = -2738.542747 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.25595 -39.18105 -36.97701 -35.21218 -33.45517 -32.76864 -30.29057 -28.47277 -26.76160 -25.11639 -23.09403 -22.33557 -21.95322 -20.80427 -18.60303 -18.26024 -17.23844 -16.98899 -16.47080 -16.44283 -15.82010 -15.40487 -14.86853 -14.66779 -14.39594 -14.24386 -13.79156 -13.69415 -13.30752 -12.87583 -12.71678 -12.58123 -12.56583 -12.44063 -12.24015 -12.16083 -11.83655 -11.68075 -11.56734 -11.25935 -10.80929 -10.55347 -10.12458 -9.31040 -8.19860 -6.31753 1.41661 1.44846 1.52721 1.57500 2.16935 2.42594 3.02378 3.13821 3.39807 3.61899 3.89110 4.12519 4.19761 4.28342 4.29497 4.34194 4.48834 4.53705 4.56137 4.68882 4.85236 4.92704 4.97678 4.98295 5.02733 5.09607 5.15777 5.21619 5.42434 5.51725 5.69548 5.83335 5.92430 6.10351 6.21328 6.55021 6.85769 7.22566 7.38014 8.92140 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.047703 B = 0.003620 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.826195 B = 7733.779222 C = 8188.090204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.553 5.553 3 C 0.046 3.954 4 C -0.111 4.111 5 C -0.124 4.124 6 H 0.130 0.870 7 C 0.516 3.484 8 O -0.588 6.588 9 N -0.713 5.713 10 C 0.129 3.871 11 C -0.101 4.101 12 C 0.023 3.977 13 C -0.543 4.543 14 H 0.067 0.933 15 C -0.004 4.004 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.286 1.286 19 H -0.265 1.265 20 H -0.265 1.265 21 C 0.055 3.945 22 H 0.040 0.960 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.415 0.585 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.069 0.931 34 H -0.009 1.009 35 H -0.009 1.009 36 H 0.263 0.737 37 H 0.063 0.937 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.767 12.832 -10.431 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.278 5.278 3 C -0.081 4.081 4 C -0.149 4.149 5 C -0.146 4.146 6 H 0.148 0.852 7 C 0.303 3.697 8 O -0.468 6.468 9 N -0.364 5.364 10 C 0.004 3.996 11 C -0.139 4.139 12 C -0.014 4.014 13 C -0.581 4.581 14 H 0.086 0.914 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.212 1.212 19 H -0.189 1.189 20 H -0.190 1.190 21 C -0.073 4.073 22 H 0.058 0.942 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.252 0.748 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.010 0.990 35 H 0.009 0.991 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.683 12.730 -11.115 23.747 hybrid contribution -0.010 -0.548 1.471 1.570 sum -16.692 12.182 -9.644 22.805 Atomic orbital electron populations 1.22620 0.85934 1.02811 1.01623 1.63539 1.09599 1.15157 1.39516 1.23103 0.94795 0.89205 1.00969 1.22585 0.98033 0.98750 0.95578 1.22619 0.93915 0.97765 1.00273 0.85214 1.21011 0.91071 0.79522 0.78050 1.90685 1.29615 1.66374 1.60123 1.46007 1.10705 1.35610 1.44106 1.21232 0.87615 0.94214 0.96500 1.21594 0.98974 0.96015 0.97308 1.18944 0.93416 0.94364 0.94724 1.21665 0.93659 1.17833 1.24922 0.91435 1.26046 0.94863 1.00177 0.99067 1.70111 1.01328 1.41493 1.44677 0.85453 0.77634 0.78721 0.78951 1.21208 1.18942 1.18973 1.22768 0.97662 0.96107 0.90750 0.94189 0.90513 0.90932 0.89520 0.91361 0.89367 0.92046 0.74773 0.93304 0.93475 0.91315 0.91240 0.99033 0.99079 0.92796 0.91832 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.12 127.69 1.16 1.38 16 2 N -0.55 -9.40 5.44 -911.70 -4.96 -14.36 16 3 C 0.05 0.69 6.73 86.77 0.58 1.28 16 4 C -0.11 -2.16 6.13 31.98 0.20 -1.97 16 5 C -0.12 -2.36 3.34 -10.36 -0.03 -2.39 16 6 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 7 C 0.52 14.74 7.02 87.66 0.62 15.36 16 8 O -0.59 -22.54 15.76 -3.05 -0.05 -22.59 16 9 N -0.71 -19.31 5.50 -463.05 -2.55 -21.86 16 10 C 0.13 4.57 5.67 86.38 0.49 5.06 16 11 C -0.10 -3.87 5.27 30.60 0.16 -3.71 16 12 C 0.02 1.21 4.97 29.85 0.15 1.36 16 13 C -0.54 -30.30 9.11 25.60 0.23 -30.06 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 15 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 16 N -0.94 -57.44 13.29 21.45 0.28 -57.15 16 17 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 21 C 0.06 0.96 6.42 86.65 0.56 1.51 16 22 H 0.04 0.38 8.10 -2.38 -0.02 0.36 16 23 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 0.76 7.78 -2.39 -0.02 0.75 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.56 7.49 -2.39 -0.02 1.55 16 29 H 0.42 8.30 8.46 -92.71 -0.78 7.52 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 36 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 37 H 0.06 1.36 7.81 -2.39 -0.02 1.35 16 38 H 0.09 1.09 7.59 -2.39 -0.02 1.07 16 Total: -1.00 -71.12 312.94 -0.43 -71.55 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.24 Total: 10.66 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 4.58 Total: -11.95 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -7.22 Total: -93.37 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -71.12 -0.43 -71.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386264866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.048 kcal (2) G-P(sol) polarization free energy of solvation -71.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds