Wall clock time and date at job start Mon Mar 30 2020 17:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46933 * 2 1 4 4 H 1.09000 * 109.46865 * 176.94064 * 3 2 1 5 5 C 1.50699 * 109.47070 * 296.93358 * 3 2 1 6 6 H 1.08005 * 119.99213 * 119.99925 * 5 3 2 7 7 C 1.37870 * 120.00493 * 300.00483 * 5 3 2 8 8 N 1.31512 * 119.99946 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00258 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46966 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47035 * 120.00125 * 9 7 5 12 12 H 1.48498 * 109.47539 * 240.00077 * 9 7 5 13 13 N 1.46898 * 109.47461 * 56.93933 * 3 2 1 14 14 C 1.39781 * 110.99944 * 56.21543 * 13 3 2 15 15 C 1.54428 * 111.77208 * 189.12627 * 14 13 3 16 16 C 1.50755 * 109.02754 * 282.59619 * 15 14 13 17 17 C 1.54172 * 112.61358 * 93.01251 * 16 15 14 18 18 C 1.53820 * 111.96770 * 318.49010 * 17 16 15 19 19 H 1.08993 * 109.04780 * 79.59580 * 18 17 16 20 20 C 1.53004 * 109.04516 * 198.56245 * 18 17 16 21 21 N 1.46894 * 109.47089 * 294.99966 * 20 18 17 22 22 C 1.47629 * 111.00060 * 185.10759 * 13 3 2 23 23 H 1.08997 * 109.46976 * 305.13892 * 1 2 3 24 24 H 1.08996 * 109.46798 * 65.14546 * 1 2 3 25 25 H 1.08995 * 109.46958 * 185.14234 * 1 2 3 26 26 H 1.09002 * 109.46766 * 120.00035 * 2 1 3 27 27 H 1.09000 * 109.46814 * 239.99783 * 2 1 3 28 28 H 0.97007 * 120.00204 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.02353 * 309.71839 * 14 13 3 30 30 H 1.09001 * 109.01782 * 68.53770 * 14 13 3 31 31 H 1.09004 * 109.54017 * 42.45584 * 15 14 13 32 32 H 1.09000 * 109.54991 * 162.63560 * 15 14 13 33 33 H 1.09007 * 108.85235 * 213.82524 * 16 15 14 34 34 H 1.09001 * 108.85335 * 332.30734 * 16 15 14 35 35 H 1.08998 * 108.97812 * 79.13220 * 17 16 15 36 36 H 1.08999 * 108.97956 * 197.84649 * 17 16 15 37 37 H 1.08997 * 109.47211 * 55.00367 * 20 18 17 38 38 H 1.09005 * 109.46559 * 175.00071 * 20 18 17 39 39 H 1.00903 * 111.00459 * 56.04953 * 21 20 18 40 40 H 1.00900 * 111.00366 * 180.02562 * 21 20 18 41 41 H 1.09008 * 109.74449 * 269.98574 * 22 13 3 42 42 H 1.08999 * 109.74526 * 30.70458 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4430 0.0548 5 6 1.6007 2.1306 -1.2667 6 1 0.9759 3.0100 -1.2146 7 6 1.9961 1.6375 -2.4920 8 7 2.7564 0.5663 -2.5554 9 14 1.4509 2.4901 -4.0621 10 1 0.6073 3.6635 -3.7208 11 1 2.6451 2.9431 -4.8197 12 1 0.6674 1.5417 -4.8940 13 7 1.4909 2.1560 1.1607 14 6 1.8083 1.4954 2.3509 15 6 1.0562 2.0970 3.5581 16 6 1.7306 3.3819 3.9666 17 6 1.1029 4.6201 3.2961 18 6 0.7723 4.3671 1.8153 19 1 -0.1616 3.8090 1.7497 20 6 0.6012 5.7115 1.1052 21 7 -0.5676 6.4107 1.6554 22 6 1.8630 3.5843 1.1282 23 1 -0.3633 0.5915 0.8404 24 1 -0.3633 0.4319 -0.9325 25 1 -0.3633 -1.0235 0.0921 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.0344 0.2191 -3.4175 29 1 1.5417 0.4428 2.2550 30 1 2.8813 1.5741 2.5257 31 1 0.0224 2.3006 3.2790 32 1 1.0774 1.3921 4.3892 33 1 1.6551 3.4908 5.0486 34 1 2.7840 3.3299 3.6911 35 1 0.1863 4.8828 3.8242 36 1 1.8018 5.4537 3.3660 37 1 1.4932 6.3191 1.2578 38 1 0.4547 5.5427 0.0383 39 1 -0.4851 6.5219 2.6549 40 1 -0.7023 7.3020 1.2021 41 1 2.8075 3.7308 1.6523 42 1 1.9593 3.9163 0.0945 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389619972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:30 Heat of formation + Delta-G solvation = -23.818030 kcal Electronic energy + Delta-G solvation = -19000.235634 eV Core-core repulsion = 16399.814643 eV Total energy + Delta-G solvation = -2600.420991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.66040 -37.50796 -35.60064 -34.01294 -32.74266 -31.91810 -28.85681 -27.17048 -26.18887 -24.89362 -23.53260 -22.17275 -20.68960 -19.71182 -18.10785 -17.43445 -16.90941 -16.39908 -16.26398 -15.52648 -15.31142 -15.08656 -14.61723 -14.49547 -14.09040 -13.98091 -13.62611 -13.09019 -12.86070 -12.77342 -12.73214 -12.59249 -12.34122 -12.12045 -11.94770 -11.72043 -11.56033 -11.36066 -11.07407 -11.01391 -10.95600 -10.67547 -10.41498 -9.52881 -8.67746 -8.05727 -6.14457 1.39966 1.43252 1.53749 2.44570 3.22121 3.35671 3.85333 3.92326 3.96480 4.12787 4.30069 4.35929 4.51442 4.59218 4.61507 4.74153 4.77028 4.82521 4.86483 4.91453 4.92439 5.03695 5.09125 5.21180 5.22887 5.31396 5.37012 5.44155 5.48797 5.54196 5.63000 5.71390 5.77840 5.83591 5.98538 6.30838 6.37722 6.54722 6.70516 7.00024 7.13051 7.53179 9.00050 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021368 B = 0.009193 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.030305 B = 3045.022248 C = 3940.250450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.110 4.110 3 C 0.227 3.773 4 H -0.050 1.050 5 C -0.495 4.495 6 H 0.058 0.942 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.543 5.543 14 C 0.070 3.930 15 C -0.108 4.108 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.071 4.071 19 H 0.069 0.931 20 C 0.073 3.927 21 N -0.852 5.852 22 C 0.078 3.922 23 H 0.055 0.945 24 H 0.031 0.969 25 H 0.037 0.963 26 H 0.027 0.973 27 H 0.062 0.938 28 H 0.258 0.742 29 H 0.064 0.936 30 H -0.012 1.012 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.030 0.970 38 H 0.051 0.949 39 H 0.347 0.653 40 H 0.347 0.653 41 H 0.018 0.982 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 7.794 11.482 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.148 4.148 3 C 0.120 3.880 4 H -0.032 1.032 5 C -0.534 4.534 6 H 0.076 0.924 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.267 5.267 14 C -0.060 4.060 15 C -0.146 4.146 16 C -0.152 4.152 17 C -0.141 4.141 18 C -0.091 4.091 19 H 0.087 0.913 20 C -0.059 4.059 21 N -0.384 5.384 22 C -0.050 4.050 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.006 0.994 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.036 0.964 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.502 7.054 11.069 13.877 hybrid contribution 1.787 0.742 -0.980 2.169 sum -2.715 7.797 10.090 13.037 Atomic orbital electron populations 1.21310 0.95576 0.98626 1.00921 1.21493 0.96500 0.97630 0.99191 1.18990 0.89500 0.91550 0.87921 1.03219 1.21308 1.29931 1.11484 0.90631 0.92380 1.25601 0.95497 0.95729 1.01760 1.70023 1.37302 1.23668 1.25193 0.85635 0.77890 0.78795 0.80128 1.19152 1.21064 1.20920 1.58822 1.63105 1.02142 1.02600 1.21076 0.95245 0.98762 0.90877 1.21434 0.99969 0.97012 0.96149 1.21364 0.98954 0.94430 1.00476 1.21915 1.00768 0.97354 0.94069 1.20899 0.98859 0.94689 0.94637 0.91279 1.21788 0.91316 0.94354 0.98401 1.58653 1.42525 1.27321 1.09886 1.21689 0.95265 0.87958 1.00050 0.92563 0.94996 0.94423 0.95479 0.92001 0.93241 0.91820 0.99372 0.91407 0.90394 0.90416 0.94054 0.90779 0.92126 0.95166 0.93056 0.83963 0.83969 0.96357 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.38 71.98 0.68 -4.01 16 2 C -0.11 -5.35 4.96 30.60 0.15 -5.20 16 3 C 0.23 11.55 1.81 44.17 0.08 11.63 16 4 H -0.05 -2.90 8.14 -2.39 -0.02 -2.92 16 5 C -0.49 -26.85 6.49 25.60 0.17 -26.68 16 6 H 0.06 3.17 6.68 -2.91 -0.02 3.15 16 7 C 0.01 0.67 5.30 84.65 0.45 1.12 16 8 N -0.92 -53.43 11.30 21.44 0.24 -53.18 16 9 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 N -0.54 -22.87 2.93 -892.31 -2.61 -25.48 16 14 C 0.07 2.59 4.46 88.07 0.39 2.99 16 15 C -0.11 -3.04 5.65 30.35 0.17 -2.87 16 16 C -0.11 -2.86 5.32 30.26 0.16 -2.70 16 17 C -0.10 -2.50 4.62 31.27 0.14 -2.35 16 18 C -0.07 -2.22 1.96 -11.23 -0.02 -2.24 16 19 H 0.07 2.48 7.26 -2.39 -0.02 2.46 16 20 C 0.07 2.05 6.01 86.31 0.52 2.57 16 21 N -0.85 -19.66 9.62 -186.72 -1.80 -21.45 16 22 C 0.08 3.03 4.56 85.45 0.39 3.42 16 23 H 0.06 2.34 7.08 -2.39 -0.02 2.33 16 24 H 0.03 1.51 7.49 -2.39 -0.02 1.49 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.03 1.21 6.34 -2.39 -0.02 1.20 16 27 H 0.06 3.41 5.99 -2.39 -0.01 3.40 16 28 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 29 H 0.06 2.42 5.44 -2.39 -0.01 2.41 16 30 H -0.01 -0.46 7.54 -2.39 -0.02 -0.47 16 31 H 0.07 2.01 7.11 -2.38 -0.02 1.99 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.04 1.15 6.57 -2.39 -0.02 1.13 16 35 H 0.07 1.55 7.51 -2.39 -0.02 1.53 16 36 H 0.06 1.33 7.88 -2.39 -0.02 1.31 16 37 H 0.03 0.78 8.01 -2.39 -0.02 0.76 16 38 H 0.05 1.70 7.91 -2.38 -0.02 1.68 16 39 H 0.35 6.61 7.65 -89.69 -0.69 5.93 16 40 H 0.35 6.63 9.08 -89.69 -0.81 5.82 16 41 H 0.02 0.70 6.66 -2.38 -0.02 0.69 16 42 H 0.06 2.83 5.22 -2.39 -0.01 2.82 16 Total: -1.00 -59.93 303.52 0.64 -59.29 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -0.50 Total: 19.01 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 3.28 Total: -24.33 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -4.17 Total: -100.12 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -59.93 0.64 -59.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389619972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.473 kcal (2) G-P(sol) polarization free energy of solvation -59.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds