Wall clock time and date at job start Mon Mar 30 2020 17:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 119.99983 * 2 1 4 4 C 1.34777 * 119.99849 * 179.97438 * 2 1 3 5 5 O 1.21279 * 119.99983 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99822 * 179.97438 * 4 2 1 7 7 N 1.46899 * 109.47177 * 173.90044 * 6 4 2 8 8 C 1.46843 * 111.00369 * 169.43941 * 7 6 4 9 9 C 1.53033 * 109.52786 * 185.84511 * 8 7 6 10 10 C 1.53121 * 109.27565 * 300.81860 * 9 8 7 11 11 C 1.53120 * 109.15755 * 57.65581 * 10 9 8 12 12 H 1.08999 * 109.53759 * 62.30346 * 11 10 9 13 13 C 1.50702 * 109.50244 * 182.40345 * 11 10 9 14 14 H 1.08000 * 120.00025 * 119.52872 * 13 11 10 15 15 C 1.37878 * 119.99813 * 299.80283 * 13 11 10 16 16 N 1.31509 * 120.00118 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99817 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46827 * 60.00401 * 17 15 13 19 19 H 1.48500 * 109.46960 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47534 * 300.00073 * 17 15 13 21 21 C 1.46843 * 111.00294 * 293.65251 * 7 6 4 22 22 H 1.08992 * 109.47000 * 270.00082 * 1 2 3 23 23 H 1.09004 * 109.46831 * 30.00229 * 1 2 3 24 24 H 1.09000 * 109.46713 * 149.99877 * 1 2 3 25 25 H 1.08999 * 109.47131 * 270.00066 * 3 2 1 26 26 H 1.09004 * 109.47362 * 30.00134 * 3 2 1 27 27 H 1.09000 * 109.47483 * 149.99698 * 3 2 1 28 28 H 1.09006 * 109.47165 * 53.90812 * 6 4 2 29 29 H 1.08998 * 109.47441 * 293.90812 * 6 4 2 30 30 H 1.09005 * 109.46318 * 305.86642 * 8 7 6 31 31 H 1.09008 * 109.46275 * 65.82184 * 8 7 6 32 32 H 1.08993 * 109.50438 * 60.75706 * 9 8 7 33 33 H 1.09002 * 109.50486 * 180.88682 * 9 8 7 34 34 H 1.08999 * 109.52569 * 297.75463 * 10 9 8 35 35 H 1.08994 * 109.52485 * 177.55776 * 10 9 8 36 36 H 0.97001 * 119.99978 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.46197 * 54.14373 * 21 7 6 38 38 H 1.08998 * 109.46501 * 294.17285 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 -0.0001 7 7 4.1356 -2.5442 0.1478 8 6 5.5816 -2.6178 -0.0975 9 6 6.0298 -4.0809 -0.0788 10 6 5.6923 -4.6956 1.2824 11 6 4.1879 -4.5628 1.5347 12 1 3.6402 -5.1199 0.7745 13 6 3.8559 -5.1122 2.8981 14 1 3.4120 -4.4711 3.6453 15 6 4.1240 -6.4321 3.1934 16 7 4.6689 -7.2115 2.2851 17 14 3.7131 -7.1130 4.8837 18 1 2.2547 -6.9794 5.1300 19 1 4.0958 -8.5465 4.9462 20 1 4.4615 -6.3548 5.9182 21 6 3.7931 -3.0856 1.4691 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 2.3792 1.5833 -1.0277 26 1 1.6085 2.0284 0.5139 27 1 3.1499 1.1384 0.5139 28 1 4.0096 -0.5612 0.8299 29 1 4.0089 -0.7514 -0.9399 30 1 5.8076 -2.1811 -1.0703 31 1 6.1104 -2.0659 0.6797 32 1 5.5116 -4.6303 -0.8647 33 1 7.1057 -4.1341 -0.2453 34 1 6.2405 -4.1711 2.0650 35 1 5.9704 -5.7495 1.2852 36 1 4.8579 -8.1400 2.4930 37 1 2.7200 -2.9889 1.6342 38 1 4.3302 -2.5317 2.2390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397725120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:55 Heat of formation + Delta-G solvation = -28.311914 kcal Electronic energy + Delta-G solvation = -18005.273430 eV Core-core repulsion = 15268.824475 eV Total energy + Delta-G solvation = -2736.448955 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.77677 -37.70475 -35.33255 -33.63034 -31.73218 -29.76451 -28.75108 -27.08329 -25.10207 -24.85481 -22.08782 -21.25289 -19.04559 -18.55473 -16.80109 -16.39331 -15.83605 -15.74740 -14.77119 -14.44501 -14.05886 -13.62268 -13.34146 -12.81224 -12.74102 -12.62175 -12.59000 -12.28261 -12.17379 -11.97127 -11.56569 -11.35291 -10.85382 -10.63434 -10.59186 -10.05632 -9.79987 -9.51301 -9.33597 -8.92603 -8.63609 -8.54512 -8.20079 -7.60864 -5.87250 -3.92410 2.90944 3.03818 3.38874 3.42903 3.45923 4.43186 4.57318 4.77694 4.95370 5.15281 5.30558 5.38545 5.41332 5.42651 5.53645 5.61839 5.72185 5.81861 5.86116 6.09037 6.28802 6.44062 6.50172 6.67356 6.76204 6.82907 7.10739 7.29742 7.36051 7.49585 7.70368 7.84015 7.87852 8.23073 8.28891 8.47853 8.59655 9.11189 9.70703 11.19120 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.006591 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.194834 B = 4247.032420 C = 4960.766002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.634 5.634 3 C 0.080 3.920 4 C 0.509 3.491 5 O -0.502 6.502 6 C 0.040 3.960 7 N -0.523 5.523 8 C 0.065 3.935 9 C -0.117 4.117 10 C -0.111 4.111 11 C 0.057 3.943 12 H 0.036 0.964 13 C -0.511 4.511 14 H 0.051 0.949 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.279 1.279 21 C 0.067 3.933 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.029 0.971 35 H 0.091 0.909 36 H 0.259 0.741 37 H 0.071 0.929 38 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 16.627 -5.457 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.372 5.372 3 C -0.063 4.063 4 C 0.297 3.703 5 O -0.374 6.374 6 C -0.091 4.091 7 N -0.248 5.248 8 C -0.063 4.063 9 C -0.155 4.155 10 C -0.149 4.149 11 C 0.038 3.962 12 H 0.054 0.946 13 C -0.550 4.550 14 H 0.069 0.931 15 C -0.138 4.138 16 N -0.529 5.529 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.205 1.205 21 C -0.060 4.060 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -2.097 15.549 -5.832 16.739 hybrid contribution 0.206 0.365 1.555 1.610 sum -1.891 15.914 -4.277 16.587 Atomic orbital electron populations 1.21561 0.79546 1.02765 1.01618 1.47832 1.06893 1.06392 1.76037 1.21764 0.97405 0.85545 1.01605 1.20774 0.90378 0.83023 0.76158 1.90751 1.69776 1.30497 1.46418 1.21945 0.91955 0.93204 1.02026 1.61739 1.13776 1.15495 1.33785 1.22051 0.86966 0.98549 0.98716 1.21668 0.98403 0.94135 1.01245 1.21672 0.99198 1.02308 0.91766 1.18623 0.92189 0.88555 0.96803 0.94556 1.21109 1.40416 0.95318 0.98144 0.93067 1.24919 0.95222 0.96928 0.96766 1.69884 1.43337 1.06252 1.33382 0.86702 0.78834 0.77838 0.84844 1.20336 1.21322 1.20461 1.22414 1.00252 0.98722 0.84594 0.93040 0.91716 0.90514 0.92750 0.91281 0.90975 0.92926 0.88721 0.92374 0.95825 0.91943 0.93398 0.95236 0.89092 0.93096 0.91037 0.96943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.44 59.85 0.62 1.59 16 2 N -0.63 -7.99 3.27 -189.52 -0.62 -8.61 16 3 C 0.08 0.65 10.26 59.84 0.61 1.26 16 4 C 0.51 8.61 7.21 -10.99 -0.08 8.53 16 5 O -0.50 -10.98 14.28 5.56 0.08 -10.90 16 6 C 0.04 0.62 4.18 -4.98 -0.02 0.60 16 7 N -0.52 -10.43 4.35 -236.12 -1.03 -11.45 16 8 C 0.06 1.16 5.46 -3.84 -0.02 1.14 16 9 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 10 C -0.11 -2.74 5.03 -26.61 -0.13 -2.88 16 11 C 0.06 1.54 2.26 -91.69 -0.21 1.33 16 12 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.51 -14.84 8.56 -34.44 -0.29 -15.14 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.81 5.30 -17.82 -0.09 1.71 16 16 N -0.89 -26.39 11.36 55.43 0.63 -25.76 16 17 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.07 1.56 4.34 -3.84 -0.02 1.54 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 24 H 0.08 0.99 7.42 -51.93 -0.39 0.60 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 27 H 0.07 0.55 6.27 -51.93 -0.33 0.23 16 28 H 0.05 0.73 7.05 -51.93 -0.37 0.36 16 29 H 0.09 1.20 7.98 -51.93 -0.41 0.78 16 30 H 0.06 0.87 8.01 -51.93 -0.42 0.46 16 31 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 2.49 6.17 -51.93 -0.32 2.17 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.07 1.79 6.05 -51.93 -0.31 1.48 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 299.53 15.07 4.51 4.51 Total: -1.00 -33.49 299.53 -7.54 -41.03 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -6.30 Total: -3.07 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 0.21 Total: -2.83 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -1.02 Total: -45.82 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.49 -7.54 -41.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397725120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.719 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds