Wall clock time and date at job start Mon Mar 30 2020 17:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 119.99983 * 2 1 4 4 C 1.34777 * 119.99849 * 179.97438 * 2 1 3 5 5 O 1.21279 * 119.99983 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99822 * 179.97438 * 4 2 1 7 7 N 1.46899 * 109.47177 * 173.90044 * 6 4 2 8 8 C 1.46843 * 111.00369 * 169.43941 * 7 6 4 9 9 C 1.53033 * 109.52786 * 185.84511 * 8 7 6 10 10 C 1.53121 * 109.27565 * 300.81860 * 9 8 7 11 11 C 1.53120 * 109.15755 * 57.65581 * 10 9 8 12 12 H 1.08999 * 109.53759 * 62.30346 * 11 10 9 13 13 C 1.50702 * 109.50244 * 182.40345 * 11 10 9 14 14 H 1.08000 * 120.00025 * 119.52872 * 13 11 10 15 15 C 1.37878 * 119.99813 * 299.80283 * 13 11 10 16 16 N 1.31509 * 120.00118 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99817 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46827 * 60.00401 * 17 15 13 19 19 H 1.48500 * 109.46960 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47534 * 300.00073 * 17 15 13 21 21 C 1.46843 * 111.00294 * 293.65251 * 7 6 4 22 22 H 1.08992 * 109.47000 * 270.00082 * 1 2 3 23 23 H 1.09004 * 109.46831 * 30.00229 * 1 2 3 24 24 H 1.09000 * 109.46713 * 149.99877 * 1 2 3 25 25 H 1.08999 * 109.47131 * 270.00066 * 3 2 1 26 26 H 1.09004 * 109.47362 * 30.00134 * 3 2 1 27 27 H 1.09000 * 109.47483 * 149.99698 * 3 2 1 28 28 H 1.09006 * 109.47165 * 53.90812 * 6 4 2 29 29 H 1.08998 * 109.47441 * 293.90812 * 6 4 2 30 30 H 1.09005 * 109.46318 * 305.86642 * 8 7 6 31 31 H 1.09008 * 109.46275 * 65.82184 * 8 7 6 32 32 H 1.08993 * 109.50438 * 60.75706 * 9 8 7 33 33 H 1.09002 * 109.50486 * 180.88682 * 9 8 7 34 34 H 1.08999 * 109.52569 * 297.75463 * 10 9 8 35 35 H 1.08994 * 109.52485 * 177.55776 * 10 9 8 36 36 H 0.97001 * 119.99978 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.46197 * 54.14373 * 21 7 6 38 38 H 1.08998 * 109.46501 * 294.17285 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 -0.0001 7 7 4.1356 -2.5442 0.1478 8 6 5.5816 -2.6178 -0.0975 9 6 6.0298 -4.0809 -0.0788 10 6 5.6923 -4.6956 1.2824 11 6 4.1879 -4.5628 1.5347 12 1 3.6402 -5.1199 0.7745 13 6 3.8559 -5.1122 2.8981 14 1 3.4120 -4.4711 3.6453 15 6 4.1240 -6.4321 3.1934 16 7 4.6689 -7.2115 2.2851 17 14 3.7131 -7.1130 4.8837 18 1 2.2547 -6.9794 5.1300 19 1 4.0958 -8.5465 4.9462 20 1 4.4615 -6.3548 5.9182 21 6 3.7931 -3.0856 1.4691 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 2.3792 1.5833 -1.0277 26 1 1.6085 2.0284 0.5139 27 1 3.1499 1.1384 0.5139 28 1 4.0096 -0.5612 0.8299 29 1 4.0089 -0.7514 -0.9399 30 1 5.8076 -2.1811 -1.0703 31 1 6.1104 -2.0659 0.6797 32 1 5.5116 -4.6303 -0.8647 33 1 7.1057 -4.1341 -0.2453 34 1 6.2405 -4.1711 2.0650 35 1 5.9704 -5.7495 1.2852 36 1 4.8579 -8.1400 2.4930 37 1 2.7200 -2.9889 1.6342 38 1 4.3302 -2.5317 2.2390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397725120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:55 Heat of formation + Delta-G solvation = -52.563919 kcal Electronic energy + Delta-G solvation = -18006.325076 eV Core-core repulsion = 15268.824475 eV Total energy + Delta-G solvation = -2737.500601 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05716 -39.29164 -36.46863 -35.56099 -33.53505 -31.66725 -29.85417 -28.08270 -26.95274 -26.22766 -23.72919 -23.05190 -20.39595 -20.17157 -18.44877 -17.97886 -17.07354 -16.96911 -16.57706 -16.03869 -15.58634 -14.97426 -14.90199 -14.40642 -14.20671 -14.04956 -13.72973 -13.44402 -13.37877 -13.24366 -12.89914 -12.82878 -12.79369 -12.56243 -12.47558 -11.82310 -11.73562 -11.36691 -11.01675 -10.82375 -10.51596 -10.37951 -9.61908 -9.10352 -8.08564 -6.23265 1.38112 1.41313 1.48730 1.68141 2.04704 2.41874 3.12901 3.17510 3.67551 4.13337 4.21768 4.28992 4.32679 4.43247 4.45517 4.50638 4.52036 4.61410 4.77327 4.82977 4.89593 4.92320 4.96492 5.00001 5.11535 5.21843 5.40739 5.49368 5.59534 5.61909 5.93751 6.14092 6.19140 6.23292 6.45042 6.48447 6.88746 7.29291 7.43938 8.96377 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.006591 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.194834 B = 4247.032420 C = 4960.766002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.628 5.628 3 C 0.071 3.929 4 C 0.498 3.502 5 O -0.570 6.570 6 C 0.043 3.957 7 N -0.547 5.547 8 C 0.068 3.932 9 C -0.112 4.112 10 C -0.103 4.103 11 C 0.054 3.946 12 H -0.016 1.016 13 C -0.540 4.540 14 H 0.046 0.954 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.957 3.043 18 H -0.276 1.276 19 H -0.279 1.279 20 H -0.267 1.267 21 C 0.088 3.912 22 H 0.051 0.949 23 H 0.105 0.895 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.134 0.866 30 H 0.100 0.900 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.056 0.944 36 H 0.261 0.739 37 H 0.045 0.955 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 19.501 -5.501 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.363 5.363 3 C -0.070 4.070 4 C 0.287 3.713 5 O -0.449 6.449 6 C -0.088 4.088 7 N -0.272 5.272 8 C -0.059 4.059 9 C -0.150 4.150 10 C -0.141 4.141 11 C 0.036 3.964 12 H 0.002 0.998 13 C -0.578 4.578 14 H 0.064 0.936 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.204 1.204 20 H -0.192 1.192 21 C -0.039 4.039 22 H 0.070 0.930 23 H 0.123 0.877 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.151 0.849 30 H 0.118 0.882 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -1.134 18.504 -5.886 19.451 hybrid contribution -0.139 -0.456 1.519 1.592 sum -1.272 18.047 -4.367 18.612 Atomic orbital electron populations 1.21683 0.78935 1.03378 1.01865 1.47966 1.07652 1.06865 1.73789 1.22113 0.97695 0.83635 1.03565 1.21201 0.91238 0.83299 0.75580 1.90730 1.70991 1.33132 1.50001 1.22078 0.90930 0.90885 1.04881 1.61545 1.15456 1.18866 1.31334 1.22094 0.85602 0.96715 1.01453 1.21601 1.00225 0.95720 0.97451 1.21453 0.97332 1.00663 0.94692 1.18536 0.93204 0.90475 0.94218 0.99821 1.21480 1.41035 0.96119 0.99196 0.93577 1.25753 0.94886 0.97130 1.00780 1.70039 1.43733 1.06449 1.35272 0.85644 0.78602 0.77436 0.80157 1.20137 1.20439 1.19162 1.21915 0.98506 0.96525 0.86985 0.93021 0.87696 0.93233 0.90520 0.88944 0.90154 0.90358 0.84877 0.88219 0.94301 0.93750 0.90306 0.95322 0.92509 0.92980 0.93686 0.96621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.75 10.44 127.77 1.33 3.08 16 2 N -0.63 -14.50 3.27 -871.89 -2.85 -17.36 16 3 C 0.07 0.85 10.26 127.77 1.31 2.16 16 4 C 0.50 16.48 7.21 87.66 0.63 17.11 16 5 O -0.57 -26.02 14.28 -3.03 -0.04 -26.06 16 6 C 0.04 1.20 4.18 85.56 0.36 1.56 16 7 N -0.55 -21.25 4.35 -900.94 -3.92 -25.17 16 8 C 0.07 2.24 5.46 86.33 0.47 2.71 16 9 C -0.11 -4.43 6.09 30.65 0.19 -4.25 16 10 C -0.10 -5.21 5.03 30.68 0.15 -5.06 16 11 C 0.05 3.07 2.26 -11.49 -0.03 3.05 16 12 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 13 C -0.54 -32.61 8.56 25.60 0.22 -32.39 16 14 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 15 C 0.01 0.78 5.30 84.66 0.45 1.23 16 16 N -0.92 -56.28 11.36 21.45 0.24 -56.04 16 17 Si 0.96 46.19 29.54 68.60 2.03 48.21 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 C 0.09 4.21 4.34 86.33 0.37 4.59 16 22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.10 1.31 8.07 -2.39 -0.02 1.29 16 24 H 0.05 1.31 7.42 -2.39 -0.02 1.29 16 25 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.09 0.72 8.07 -2.39 -0.02 0.70 16 27 H 0.08 0.86 6.27 -2.39 -0.01 0.84 16 28 H 0.08 1.85 7.05 -2.38 -0.02 1.83 16 29 H 0.13 2.72 7.98 -2.39 -0.02 2.70 16 30 H 0.10 2.50 8.01 -2.38 -0.02 2.49 16 31 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 3.23 6.17 -2.39 -0.01 3.22 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.04 2.37 6.05 -2.39 -0.01 2.35 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -78.78 299.53 1.94 -76.84 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.02 Total: 5.78 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 5.46 Total: -6.21 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -6.53 Total: -98.56 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.04 Total: -26.06 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -78.78 1.94 -76.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397725120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.280 kcal (2) G-P(sol) polarization free energy of solvation -78.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds