Wall clock time and date at job start Mon Mar 30 2020 17:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 120.00025 * 2 1 4 4 C 1.34777 * 119.99881 * 179.97438 * 2 1 3 5 5 O 1.21283 * 120.00194 * 0.02562 * 4 2 1 6 6 C 1.50701 * 119.99798 * 180.02562 * 4 2 1 7 7 N 1.46905 * 109.46838 * 186.26808 * 6 4 2 8 8 C 1.46840 * 110.99918 * 190.60110 * 7 6 4 9 9 C 1.53043 * 109.52694 * 174.16196 * 8 7 6 10 10 C 1.53122 * 109.27608 * 59.17985 * 9 8 7 11 11 C 1.53124 * 109.15925 * 302.34958 * 10 9 8 12 12 H 1.09000 * 109.50447 * 297.71227 * 11 10 9 13 13 C 1.50701 * 109.49865 * 177.63559 * 11 10 9 14 14 H 1.08004 * 119.99851 * 239.99745 * 13 11 10 15 15 C 1.37873 * 120.00118 * 60.00329 * 13 11 10 16 16 N 1.31517 * 120.00188 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00039 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47229 * 59.99376 * 17 15 13 19 19 H 1.48493 * 109.47245 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46847 * 299.99655 * 17 15 13 21 21 C 1.46851 * 110.99965 * 66.39642 * 7 6 4 22 22 H 1.08999 * 109.46901 * 269.99941 * 1 2 3 23 23 H 1.08999 * 109.46627 * 29.99643 * 1 2 3 24 24 H 1.08996 * 109.47124 * 150.00036 * 1 2 3 25 25 H 1.08998 * 109.47046 * 270.00170 * 3 2 1 26 26 H 1.08998 * 109.47322 * 30.00271 * 3 2 1 27 27 H 1.09009 * 109.46749 * 149.99817 * 3 2 1 28 28 H 1.09000 * 109.47483 * 66.27124 * 6 4 2 29 29 H 1.08996 * 109.47105 * 306.26804 * 6 4 2 30 30 H 1.08999 * 109.46452 * 54.14973 * 8 7 6 31 31 H 1.09005 * 109.46702 * 294.18163 * 8 7 6 32 32 H 1.08997 * 109.49868 * 299.24278 * 9 8 7 33 33 H 1.08992 * 109.50481 * 179.12115 * 9 8 7 34 34 H 1.08999 * 109.52119 * 62.25039 * 10 9 8 35 35 H 1.08993 * 109.52279 * 182.44786 * 10 9 8 36 36 H 0.97003 * 119.99929 * 180.02562 * 16 15 13 37 37 H 1.08993 * 109.46221 * 65.82048 * 21 7 6 38 38 H 1.09003 * 109.46133 * 305.85198 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6459 -1.1672 0.0011 7 7 4.1356 -2.5440 -0.1496 8 6 5.5813 -2.6182 0.0965 9 6 6.0295 -4.0814 0.0746 10 6 5.6929 -4.6928 -1.2883 11 6 4.1886 -4.5592 -1.5413 12 1 3.6409 -5.1179 -0.7824 13 6 3.8575 -5.1063 -2.9059 14 1 3.4073 -4.4658 -3.6498 15 6 4.1292 -6.4246 -3.2046 16 7 4.6778 -7.2045 -2.2988 17 14 3.7181 -7.1030 -4.8958 18 1 4.4626 -6.3400 -5.9296 19 1 4.1062 -8.5347 -4.9626 20 1 2.2590 -6.9732 -5.1398 21 6 3.7940 -3.0822 -1.4725 22 1 -0.3633 0.0000 1.0277 23 1 -0.3632 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5138 25 1 2.3792 1.5834 -1.0276 26 1 1.6085 2.0284 0.5139 27 1 3.1500 1.1383 0.5139 28 1 4.0089 -0.7534 0.9419 29 1 4.0095 -0.5595 -0.8274 30 1 5.8067 -2.1840 1.0706 31 1 6.1107 -2.0645 -0.6790 32 1 5.5107 -4.6326 0.8589 33 1 7.1052 -4.1350 0.2418 34 1 6.2417 -4.1665 -2.0692 35 1 5.9709 -5.7467 -1.2934 36 1 4.8693 -8.1319 -2.5091 37 1 4.3317 -2.5264 -2.2406 38 1 2.7210 -2.9850 -1.6381 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397725127.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:57 Heat of formation + Delta-G solvation = -28.748570 kcal Electronic energy + Delta-G solvation = -18005.200730 eV Core-core repulsion = 15268.732840 eV Total energy + Delta-G solvation = -2736.467890 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.77470 -37.70442 -35.33255 -33.63032 -31.72869 -29.76425 -28.75192 -27.08319 -25.10250 -24.85598 -22.08444 -21.25552 -19.04782 -18.55002 -16.78705 -16.39831 -15.82821 -15.74770 -14.75033 -14.47128 -14.04554 -13.60815 -13.37680 -12.80133 -12.77470 -12.67665 -12.49938 -12.27359 -12.19247 -11.96512 -11.56768 -11.36650 -10.85438 -10.63325 -10.59054 -10.05410 -9.79704 -9.50769 -9.33892 -8.92951 -8.64987 -8.53601 -8.20052 -7.61074 -5.87215 -3.92481 2.90533 3.03911 3.38848 3.42868 3.45878 4.42429 4.56962 4.79461 4.94555 5.17194 5.29426 5.40804 5.42407 5.43624 5.51644 5.57704 5.72509 5.82459 5.86049 6.09061 6.28875 6.44052 6.50314 6.67297 6.76324 6.83071 7.10675 7.29870 7.36066 7.49644 7.70329 7.83932 7.87924 8.23205 8.29046 8.47706 8.59645 9.11092 9.70660 11.19041 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027125 B = 0.006590 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.011459 B = 4247.546928 C = 4960.958216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.634 5.634 3 C 0.082 3.918 4 C 0.510 3.490 5 O -0.502 6.502 6 C 0.040 3.960 7 N -0.523 5.523 8 C 0.065 3.935 9 C -0.117 4.117 10 C -0.111 4.111 11 C 0.057 3.943 12 H 0.036 0.964 13 C -0.511 4.511 14 H 0.051 0.949 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.890 3.110 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.067 3.933 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.029 0.971 35 H 0.091 0.909 36 H 0.259 0.741 37 H 0.013 0.987 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 16.609 5.446 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.372 5.372 3 C -0.062 4.062 4 C 0.297 3.703 5 O -0.374 6.374 6 C -0.091 4.091 7 N -0.248 5.248 8 C -0.063 4.063 9 C -0.155 4.155 10 C -0.150 4.150 11 C 0.038 3.962 12 H 0.054 0.946 13 C -0.550 4.550 14 H 0.069 0.931 15 C -0.138 4.138 16 N -0.529 5.529 17 Si 0.718 3.282 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.060 4.060 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.118 15.531 5.820 16.720 hybrid contribution 0.206 0.368 -1.535 1.592 sum -1.912 15.899 4.285 16.577 Atomic orbital electron populations 1.21560 0.79541 1.02924 1.01463 1.47834 1.06894 1.06387 1.76067 1.21745 0.97237 0.85527 1.01690 1.20783 0.90378 0.83021 0.76139 1.90752 1.69784 1.30497 1.46395 1.21933 0.91945 0.93247 1.01999 1.61751 1.13803 1.15576 1.33655 1.22052 0.86974 0.98557 0.98709 1.21669 0.98404 0.94133 1.01247 1.21675 0.99183 1.02359 0.91740 1.18623 0.92210 0.88561 0.96781 0.94583 1.21108 1.40194 0.95470 0.98203 0.93066 1.24919 0.95235 0.96910 0.96777 1.69887 1.43242 1.06304 1.33430 0.86699 0.78826 0.77832 0.84845 1.20464 1.21324 1.20336 1.22409 1.00230 0.98741 0.84583 0.93116 0.91693 0.90466 0.92772 0.91266 0.91046 0.88744 0.92954 0.92387 0.95813 0.91949 0.93397 0.95237 0.89049 0.93098 0.96922 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.44 59.85 0.62 1.59 16 2 N -0.63 -7.99 3.27 -189.51 -0.62 -8.62 16 3 C 0.08 0.66 10.13 59.85 0.61 1.26 16 4 C 0.51 8.61 7.20 -10.98 -0.08 8.53 16 5 O -0.50 -10.98 14.29 5.55 0.08 -10.90 16 6 C 0.04 0.62 3.91 -4.97 -0.02 0.60 16 7 N -0.52 -10.43 4.35 -236.11 -1.03 -11.46 16 8 C 0.06 1.16 5.46 -3.83 -0.02 1.14 16 9 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 10 C -0.11 -2.75 5.02 -26.60 -0.13 -2.88 16 11 C 0.06 1.53 2.26 -91.69 -0.21 1.33 16 12 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 13 C -0.51 -14.83 8.57 -34.44 -0.29 -15.13 16 14 H 0.05 1.47 7.75 -52.48 -0.41 1.06 16 15 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 16 N -0.89 -26.38 11.35 55.43 0.63 -25.75 16 17 Si 0.89 22.10 29.54 -169.99 -5.02 17.07 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.07 1.56 4.34 -3.83 -0.02 1.54 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 24 H 0.08 1.02 7.42 -51.93 -0.39 0.64 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 27 H 0.07 0.51 6.61 -51.92 -0.34 0.17 16 28 H 0.09 1.19 7.55 -51.93 -0.39 0.79 16 29 H 0.05 0.73 7.90 -51.93 -0.41 0.32 16 30 H 0.06 0.87 8.01 -51.93 -0.42 0.46 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 2.50 6.15 -51.93 -0.32 2.18 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 1.78 6.06 -51.93 -0.31 1.47 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -33.49 299.88 -7.58 -41.07 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -6.34 Total: -3.13 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 0.20 Total: -2.82 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -1.02 Total: -45.82 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.49 -7.58 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397725127.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.320 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds