Wall clock time and date at job start Mon Mar 30 2020 17:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 120.00025 * 2 1 4 4 C 1.34777 * 119.99881 * 179.97438 * 2 1 3 5 5 O 1.21283 * 120.00194 * 0.02562 * 4 2 1 6 6 C 1.50701 * 119.99798 * 180.02562 * 4 2 1 7 7 N 1.46905 * 109.46838 * 186.26808 * 6 4 2 8 8 C 1.46840 * 110.99918 * 190.60110 * 7 6 4 9 9 C 1.53043 * 109.52694 * 174.16196 * 8 7 6 10 10 C 1.53122 * 109.27608 * 59.17985 * 9 8 7 11 11 C 1.53124 * 109.15925 * 302.34958 * 10 9 8 12 12 H 1.09000 * 109.50447 * 297.71227 * 11 10 9 13 13 C 1.50701 * 109.49865 * 177.63559 * 11 10 9 14 14 H 1.08004 * 119.99851 * 239.99745 * 13 11 10 15 15 C 1.37873 * 120.00118 * 60.00329 * 13 11 10 16 16 N 1.31517 * 120.00188 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00039 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47229 * 59.99376 * 17 15 13 19 19 H 1.48493 * 109.47245 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46847 * 299.99655 * 17 15 13 21 21 C 1.46851 * 110.99965 * 66.39642 * 7 6 4 22 22 H 1.08999 * 109.46901 * 269.99941 * 1 2 3 23 23 H 1.08999 * 109.46627 * 29.99643 * 1 2 3 24 24 H 1.08996 * 109.47124 * 150.00036 * 1 2 3 25 25 H 1.08998 * 109.47046 * 270.00170 * 3 2 1 26 26 H 1.08998 * 109.47322 * 30.00271 * 3 2 1 27 27 H 1.09009 * 109.46749 * 149.99817 * 3 2 1 28 28 H 1.09000 * 109.47483 * 66.27124 * 6 4 2 29 29 H 1.08996 * 109.47105 * 306.26804 * 6 4 2 30 30 H 1.08999 * 109.46452 * 54.14973 * 8 7 6 31 31 H 1.09005 * 109.46702 * 294.18163 * 8 7 6 32 32 H 1.08997 * 109.49868 * 299.24278 * 9 8 7 33 33 H 1.08992 * 109.50481 * 179.12115 * 9 8 7 34 34 H 1.08999 * 109.52119 * 62.25039 * 10 9 8 35 35 H 1.08993 * 109.52279 * 182.44786 * 10 9 8 36 36 H 0.97003 * 119.99929 * 180.02562 * 16 15 13 37 37 H 1.08993 * 109.46221 * 65.82048 * 21 7 6 38 38 H 1.09003 * 109.46133 * 305.85198 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6459 -1.1672 0.0011 7 7 4.1356 -2.5440 -0.1496 8 6 5.5813 -2.6182 0.0965 9 6 6.0295 -4.0814 0.0746 10 6 5.6929 -4.6928 -1.2883 11 6 4.1886 -4.5592 -1.5413 12 1 3.6409 -5.1179 -0.7824 13 6 3.8575 -5.1063 -2.9059 14 1 3.4073 -4.4658 -3.6498 15 6 4.1292 -6.4246 -3.2046 16 7 4.6778 -7.2045 -2.2988 17 14 3.7181 -7.1030 -4.8958 18 1 4.4626 -6.3400 -5.9296 19 1 4.1062 -8.5347 -4.9626 20 1 2.2590 -6.9732 -5.1398 21 6 3.7940 -3.0822 -1.4725 22 1 -0.3633 0.0000 1.0277 23 1 -0.3632 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5138 25 1 2.3792 1.5834 -1.0276 26 1 1.6085 2.0284 0.5139 27 1 3.1500 1.1383 0.5139 28 1 4.0089 -0.7534 0.9419 29 1 4.0095 -0.5595 -0.8274 30 1 5.8067 -2.1840 1.0706 31 1 6.1107 -2.0645 -0.6790 32 1 5.5107 -4.6326 0.8589 33 1 7.1052 -4.1350 0.2418 34 1 6.2417 -4.1665 -2.0692 35 1 5.9709 -5.7467 -1.2934 36 1 4.8693 -8.1319 -2.5091 37 1 4.3317 -2.5264 -2.2406 38 1 2.7210 -2.9850 -1.6381 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397725127.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:56 Heat of formation + Delta-G solvation = -53.006848 kcal Electronic energy + Delta-G solvation = -18006.252647 eV Core-core repulsion = 15268.732840 eV Total energy + Delta-G solvation = -2737.519808 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05515 -39.29185 -36.46849 -35.56135 -33.53171 -31.66694 -29.85494 -28.08243 -26.95507 -26.22715 -23.72669 -23.05441 -20.39123 -20.17647 -18.44959 -17.96498 -17.09231 -16.94976 -16.56543 -16.04969 -15.56782 -14.97990 -14.92415 -14.41340 -14.19501 -14.06234 -13.72161 -13.44657 -13.38030 -13.20593 -12.89794 -12.83883 -12.82224 -12.56621 -12.47409 -11.82051 -11.73586 -11.36922 -11.00426 -10.82556 -10.52067 -10.37944 -9.62601 -9.10670 -8.08490 -6.23320 1.38166 1.41273 1.48763 1.67792 2.04799 2.41860 3.12434 3.17441 3.67916 4.14286 4.24090 4.27611 4.35662 4.40910 4.44834 4.51127 4.51973 4.61511 4.77276 4.81253 4.89599 4.92277 4.95423 5.00263 5.11499 5.21827 5.40760 5.49409 5.59512 5.62003 5.93782 6.14070 6.19322 6.23358 6.44961 6.48315 6.88661 7.29152 7.43918 8.96314 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027125 B = 0.006590 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.011459 B = 4247.546928 C = 4960.958216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.628 5.628 3 C 0.072 3.928 4 C 0.499 3.501 5 O -0.570 6.570 6 C 0.043 3.957 7 N -0.547 5.547 8 C 0.068 3.932 9 C -0.112 4.112 10 C -0.103 4.103 11 C 0.054 3.946 12 H -0.017 1.017 13 C -0.540 4.540 14 H 0.046 0.954 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.957 3.043 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.276 1.276 21 C 0.088 3.912 22 H 0.060 0.940 23 H 0.101 0.899 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.057 0.943 36 H 0.261 0.739 37 H 0.016 0.984 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 19.474 5.537 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.363 5.363 3 C -0.069 4.069 4 C 0.287 3.713 5 O -0.448 6.448 6 C -0.088 4.088 7 N -0.272 5.272 8 C -0.059 4.059 9 C -0.150 4.150 10 C -0.142 4.142 11 C 0.036 3.964 12 H 0.002 0.998 13 C -0.578 4.578 14 H 0.064 0.936 15 C -0.186 4.186 16 N -0.555 5.555 17 Si 0.782 3.218 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.201 1.201 21 C -0.039 4.039 22 H 0.078 0.922 23 H 0.119 0.881 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.152 0.848 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.147 18.476 5.921 19.435 hybrid contribution -0.142 -0.451 -1.514 1.586 sum -1.289 18.025 4.407 18.600 Atomic orbital electron populations 1.21684 0.78937 1.03072 1.02175 1.47967 1.07653 1.06859 1.73820 1.22099 0.98002 0.83728 1.03107 1.21212 0.91240 0.83296 0.75558 1.90731 1.70998 1.33136 1.49972 1.22068 0.90919 0.90919 1.04867 1.61558 1.15486 1.18946 1.31186 1.22097 0.85604 0.96717 1.01459 1.21602 1.00226 0.95727 0.97445 1.21456 0.97320 1.00709 0.94675 1.18537 0.93221 0.90470 0.94206 0.99841 1.21478 1.40813 0.96272 0.99259 0.93588 1.25754 0.94897 0.97102 1.00798 1.70042 1.43631 1.06501 1.35316 0.85641 0.78597 0.77439 0.80148 1.19176 1.20433 1.20129 1.21911 0.98485 0.96540 0.86982 0.92150 0.88083 0.93703 0.91675 0.88492 0.89511 0.84789 0.90483 0.88196 0.94310 0.93747 0.90307 0.95340 0.92459 0.92980 0.96627 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.74 10.44 127.77 1.33 3.08 16 2 N -0.63 -14.52 3.27 -871.88 -2.85 -17.37 16 3 C 0.07 0.86 10.13 127.77 1.29 2.15 16 4 C 0.50 16.49 7.20 87.66 0.63 17.12 16 5 O -0.57 -26.01 14.29 -3.04 -0.04 -26.06 16 6 C 0.04 1.20 3.91 85.56 0.33 1.54 16 7 N -0.55 -21.24 4.35 -900.92 -3.92 -25.16 16 8 C 0.07 2.23 5.46 86.33 0.47 2.70 16 9 C -0.11 -4.44 6.09 30.65 0.19 -4.25 16 10 C -0.10 -5.23 5.02 30.68 0.15 -5.07 16 11 C 0.05 3.07 2.26 -11.49 -0.03 3.05 16 12 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 13 C -0.54 -32.61 8.57 25.60 0.22 -32.39 16 14 H 0.05 2.74 7.75 -2.91 -0.02 2.72 16 15 C 0.01 0.78 5.30 84.65 0.45 1.23 16 16 N -0.92 -56.26 11.35 21.45 0.24 -56.01 16 17 Si 0.96 46.18 29.54 68.60 2.03 48.21 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 C 0.09 4.22 4.34 86.32 0.37 4.60 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.10 1.34 8.07 -2.39 -0.02 1.33 16 24 H 0.04 1.23 7.42 -2.39 -0.02 1.21 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.10 0.67 8.07 -2.39 -0.02 0.65 16 27 H 0.09 0.80 6.61 -2.38 -0.02 0.79 16 28 H 0.13 2.70 7.55 -2.39 -0.02 2.69 16 29 H 0.08 1.83 7.90 -2.39 -0.02 1.81 16 30 H 0.10 2.50 8.01 -2.39 -0.02 2.48 16 31 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 3.26 6.15 -2.39 -0.01 3.25 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.04 2.35 6.06 -2.39 -0.01 2.34 16 Total: -1.00 -78.83 299.88 1.89 -76.94 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.02 Total: 5.70 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 5.42 Total: -6.25 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -6.53 Total: -98.54 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.04 Total: -26.06 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -78.83 1.89 -76.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397725127.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.930 kcal (2) G-P(sol) polarization free energy of solvation -78.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds