Wall clock time and date at job start Mon Mar 30 2020 17:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.57360 * 2 1 4 4 C 1.53123 * 109.52445 * 120.15867 * 2 1 3 5 5 C 1.53039 * 109.31189 * 177.58234 * 4 2 1 6 6 N 1.46856 * 109.51787 * 300.79882 * 5 4 2 7 7 C 1.46846 * 111.19871 * 61.74404 * 6 5 4 8 8 C 1.53030 * 109.52435 * 298.25760 * 7 6 5 9 9 H 1.09005 * 109.50161 * 299.23539 * 8 7 6 10 10 N 1.46895 * 109.50674 * 179.16004 * 8 7 6 11 11 C 1.46903 * 111.00279 * 84.99308 * 10 8 7 12 12 C 1.52997 * 109.47354 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47183 * 300.00228 * 12 11 10 14 14 C 1.52999 * 109.47216 * 60.00047 * 12 11 10 15 15 C 1.50707 * 109.47169 * 180.02562 * 12 11 10 16 16 H 1.07994 * 119.99793 * 359.97438 * 15 12 11 17 17 C 1.37877 * 119.99939 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99904 * 0.02562 * 17 15 12 19 19 Si 1.86790 * 119.99865 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47547 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47109 * 120.00182 * 19 17 15 22 22 H 1.48498 * 109.47560 * 240.00153 * 19 17 15 23 23 H 1.09005 * 109.47326 * 299.83816 * 1 2 3 24 24 H 1.09000 * 109.47499 * 59.83790 * 1 2 3 25 25 H 1.09005 * 109.47163 * 179.84343 * 1 2 3 26 26 H 1.09002 * 109.50371 * 57.61784 * 4 2 1 27 27 H 1.09003 * 109.50070 * 297.53944 * 4 2 1 28 28 H 1.09000 * 109.46148 * 60.81334 * 5 4 2 29 29 H 1.09002 * 109.46208 * 180.79044 * 5 4 2 30 30 H 1.00895 * 111.00317 * 297.64741 * 6 5 4 31 31 H 1.09004 * 109.46012 * 58.27074 * 7 6 5 32 32 H 1.08994 * 109.46057 * 178.23653 * 7 6 5 33 33 H 1.00907 * 111.00139 * 321.04259 * 10 8 7 34 34 H 1.08997 * 109.47337 * 300.00567 * 11 10 8 35 35 H 1.09009 * 109.46409 * 60.00516 * 11 10 8 36 36 H 1.09001 * 109.46922 * 60.00405 * 13 12 11 37 37 H 1.09002 * 109.47326 * 179.97438 * 13 12 11 38 38 H 1.08996 * 109.47425 * 299.99902 * 13 12 11 39 39 H 1.09012 * 109.46731 * 60.00170 * 14 12 11 40 40 H 1.08999 * 109.47543 * 179.97438 * 14 12 11 41 41 H 1.08996 * 109.47247 * 300.00201 * 14 12 11 42 42 H 0.97000 * 119.99633 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0417 -0.7250 1.2478 5 6 3.5709 -0.7751 1.2127 6 7 4.0110 -1.4792 0.0014 7 6 3.5724 -0.7758 -1.2107 8 6 2.0433 -0.7256 -1.2478 9 1 1.6463 -1.7406 -1.2675 10 7 1.6053 -0.0044 -2.4502 11 6 1.5409 -0.9041 -3.6097 12 6 1.0826 -0.1186 -4.8400 13 6 -0.3026 0.4763 -4.5785 14 6 2.0766 1.0093 -5.1243 15 6 1.0160 -1.0417 -6.0293 16 1 1.2750 -2.0843 -5.9188 17 6 0.6254 -0.5550 -7.2588 18 7 0.3114 0.7149 -7.3937 19 14 0.5434 -1.6991 -8.7330 20 1 0.9437 -3.0682 -8.3201 21 1 -0.8443 -1.7277 -9.2609 22 1 1.4651 -1.2112 -9.7902 23 1 -0.3634 0.5113 0.8915 24 1 -0.3634 0.5163 -0.8885 25 1 -0.3634 -1.0277 -0.0028 26 1 1.6447 -1.7400 1.2675 27 1 1.7156 -0.1894 2.1394 28 1 3.9674 0.2402 1.2070 29 1 3.9373 -1.3031 2.0930 30 1 3.6884 -2.4351 0.0014 31 1 3.9690 0.2395 -1.2050 32 1 3.9399 -1.3041 -2.0903 33 1 2.2059 0.7845 -2.6376 34 1 2.5277 -1.3276 -3.7962 35 1 0.8329 -1.7078 -3.4069 36 1 -0.2547 1.1440 -3.7182 37 1 -0.6289 1.0364 -5.4549 38 1 -1.0107 -0.3271 -4.3760 39 1 3.0635 0.5854 -5.3106 40 1 1.7504 1.5687 -6.0011 41 1 2.1244 1.6769 -4.2641 42 1 0.0362 1.0572 -8.2586 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423173151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:04 Heat of formation + Delta-G solvation = -19.025280 kcal Electronic energy + Delta-G solvation = -18450.510903 eV Core-core repulsion = 15850.297741 eV Total energy + Delta-G solvation = -2600.213162 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.31655 -36.48288 -33.82546 -32.88332 -31.03362 -28.71198 -26.47981 -25.55068 -25.21704 -23.92992 -22.19482 -21.81726 -20.11056 -18.37651 -16.09819 -15.81551 -15.35453 -14.66672 -14.54877 -14.37034 -14.01917 -13.52981 -13.08191 -12.74825 -12.47455 -12.25613 -11.92731 -11.83806 -11.44848 -11.24708 -11.15825 -11.06942 -10.96466 -10.69918 -10.60174 -10.41918 -10.22341 -10.18534 -10.04261 -9.40812 -9.03174 -8.78534 -8.56525 -8.27702 -7.44628 -5.90719 -4.00946 3.30568 3.39031 3.42489 4.24836 4.44663 4.65925 4.85730 4.93979 5.13146 5.26315 5.34920 5.39118 5.46125 5.54339 5.77012 5.82615 5.89529 5.96725 6.00380 6.09779 6.23847 6.35558 6.45005 6.49825 6.65425 6.72965 6.88333 6.96469 7.08762 7.17817 7.33155 7.38743 7.48816 7.75478 7.77030 7.84476 7.99092 8.22269 8.35511 8.56806 9.00763 9.64151 11.09774 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039710 B = 0.005541 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.948179 B = 5052.480704 C = 5315.622201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 H 0.066 0.934 4 C -0.153 4.153 5 C 0.056 3.944 6 N -0.685 5.685 7 C 0.028 3.972 8 C 0.058 3.942 9 H 0.069 0.931 10 N -0.676 5.676 11 C 0.077 3.923 12 C 0.069 3.931 13 C -0.118 4.118 14 C -0.132 4.132 15 C -0.505 4.505 16 H 0.051 0.949 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.888 3.112 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.040 0.960 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.338 0.662 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.337 0.663 34 H 0.012 0.988 35 H 0.053 0.947 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.017 0.983 39 H 0.018 0.982 40 H 0.083 0.917 41 H 0.010 0.990 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -1.295 14.364 14.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 H 0.085 0.915 4 C -0.193 4.193 5 C -0.074 4.074 6 N -0.314 5.314 7 C -0.104 4.104 8 C -0.055 4.055 9 H 0.088 0.912 10 N -0.307 5.307 11 C -0.051 4.051 12 C 0.068 3.932 13 C -0.176 4.176 14 C -0.190 4.190 15 C -0.544 4.544 16 H 0.070 0.930 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.716 3.284 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.212 1.212 23 H 0.059 0.941 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.155 0.845 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.156 0.844 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.101 0.899 41 H 0.029 0.971 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.412 -0.942 14.348 14.778 hybrid contribution -0.091 -1.015 -1.075 1.481 sum 3.320 -1.957 13.274 13.822 Atomic orbital electron populations 1.21669 0.94597 1.01277 1.01720 1.21112 0.96495 0.99099 0.92991 0.91527 1.22381 0.97384 1.00936 0.98564 1.22025 0.92931 0.99615 0.92787 1.60630 1.62984 1.05826 1.01932 1.22841 0.95022 0.99708 0.92782 1.22331 0.93404 0.97883 0.91861 0.91244 1.60630 1.55819 1.10883 1.03324 1.22158 0.97701 0.94907 0.90360 1.18092 0.92592 0.92547 0.89958 1.21630 0.97586 0.98700 0.99664 1.21830 0.97684 0.98937 1.00511 1.21147 1.44768 0.95136 0.93352 0.93035 1.24883 0.95242 0.94955 0.98514 1.69847 1.46072 1.12759 1.23675 0.86612 0.77549 0.81179 0.83065 1.19986 1.21132 1.21166 0.94051 0.90725 0.93676 0.92206 0.91675 0.91139 0.91134 0.84456 0.91100 0.90739 0.84363 0.96926 0.92831 0.96142 0.90826 0.96406 0.96234 0.89874 0.97072 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.07 37.16 0.34 -1.44 16 2 C -0.08 -0.98 2.49 -90.45 -0.23 -1.20 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.15 -1.59 5.36 -26.65 -0.14 -1.73 16 5 C 0.06 0.58 6.56 -3.83 -0.03 0.55 16 6 N -0.69 -8.09 6.87 -113.81 -0.78 -8.88 16 7 C 0.03 0.37 5.81 -3.84 -0.02 0.35 16 8 C 0.06 0.82 2.03 -67.60 -0.14 0.68 16 9 H 0.07 1.06 7.80 -51.93 -0.41 0.65 16 10 N -0.68 -11.56 4.83 -106.60 -0.51 -12.08 16 11 C 0.08 1.58 4.39 -3.82 -0.02 1.56 16 12 C 0.07 1.64 0.57 -155.66 -0.09 1.55 16 13 C -0.12 -2.86 8.09 37.16 0.30 -2.56 16 14 C -0.13 -3.09 7.92 37.16 0.29 -2.80 16 15 C -0.51 -13.57 8.01 -34.44 -0.28 -13.85 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 17 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 18 N -0.88 -24.50 9.35 55.43 0.52 -23.98 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 1.15 7.70 -51.93 -0.40 0.75 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.34 3.71 8.86 -39.29 -0.35 3.36 16 31 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 32 H 0.07 1.09 7.48 -51.93 -0.39 0.70 16 33 H 0.34 5.82 6.51 -39.29 -0.26 5.56 16 34 H 0.01 0.26 7.45 -51.93 -0.39 -0.13 16 35 H 0.05 1.14 8.06 -51.92 -0.42 0.72 16 36 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 37 H 0.07 1.97 6.07 -51.93 -0.32 1.65 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 40 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 41 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 314.97 15.07 4.75 4.75 Total: -1.00 -26.58 314.97 -8.88 -35.46 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.74 Total: 5.82 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -0.09 Total: -17.23 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.78 Total: -44.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.58 -8.88 -35.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423173151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.434 kcal (2) G-P(sol) polarization free energy of solvation -26.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds