Wall clock time and date at job start Mon Mar 30 2020 17:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46897 * 111.00168 * 2 1 4 4 C 1.46901 * 111.00090 * 123.95095 * 2 1 3 5 5 H 1.09005 * 108.31630 * 57.38439 * 4 2 1 6 6 C 1.52567 * 108.51275 * 174.99847 * 4 2 1 7 7 C 1.50884 * 109.37489 * 206.28818 * 6 4 2 8 8 C 1.53956 * 110.09429 * 268.09661 * 7 6 4 9 9 N 1.47604 * 112.13778 * 40.56251 * 8 7 6 10 10 C 1.34781 * 118.64200 * 222.13107 * 9 8 7 11 11 O 1.21681 * 119.99993 * 354.79492 * 10 9 8 12 12 C 1.46378 * 119.99762 * 174.78824 * 10 9 8 13 13 H 1.07997 * 120.00075 * 5.00416 * 12 10 9 14 14 C 1.40045 * 119.99720 * 184.99925 * 12 10 9 15 15 N 1.30667 * 120.00106 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99659 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47286 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46591 * 120.00468 * 16 14 12 19 19 H 1.48495 * 109.47130 * 239.99990 * 16 14 12 20 20 C 1.44580 * 122.71309 * 42.15694 * 9 8 7 21 21 C 1.47180 * 108.56215 * 299.79171 * 4 2 1 22 22 H 1.09002 * 109.47071 * 296.05093 * 1 2 3 23 23 H 1.08999 * 109.47488 * 56.04502 * 1 2 3 24 24 H 1.09004 * 109.47185 * 176.04857 * 1 2 3 25 25 H 1.09005 * 109.47093 * 183.95838 * 3 2 1 26 26 H 1.09000 * 109.47289 * 303.94917 * 3 2 1 27 27 H 1.08996 * 109.47625 * 63.95396 * 3 2 1 28 28 H 1.09001 * 109.49045 * 86.31370 * 6 4 2 29 29 H 1.09000 * 109.49220 * 326.26060 * 6 4 2 30 30 H 1.09005 * 109.36975 * 28.28308 * 7 6 4 31 31 H 1.08997 * 109.36991 * 148.03293 * 7 6 4 32 32 H 1.08998 * 108.94549 * 161.24842 * 8 7 6 33 33 H 1.08998 * 108.94371 * 279.87918 * 8 7 6 34 34 H 0.97003 * 119.99882 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.44978 * 29.28625 * 20 9 8 36 36 H 1.08996 * 109.45199 * 149.21111 * 20 9 8 37 37 H 1.09001 * 109.34647 * 55.69085 * 21 4 2 38 38 H 1.09000 * 109.29661 * 296.22250 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.5974 -1.7792 1.0819 6 6 3.5145 -0.8347 1.0139 7 6 4.0184 -2.0716 1.7158 8 6 4.3741 -1.7427 3.1771 9 7 3.3902 -0.8343 3.7981 10 6 3.8396 0.1712 4.5749 11 8 5.0262 0.2598 4.8294 12 6 2.9003 1.1568 5.1123 13 1 1.8390 1.0336 4.9543 14 6 3.3777 2.2596 5.8316 15 7 4.6617 2.4089 6.0225 16 14 2.1788 3.5170 6.5180 17 1 0.7913 3.1210 6.1672 18 1 2.3174 3.5778 7.9954 19 1 2.4749 4.8514 5.9378 20 6 1.9643 -0.9791 3.6079 21 6 1.5161 -0.1445 2.3828 22 1 -0.3633 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3431 -0.0709 26 1 1.5899 1.9163 -0.8525 27 1 1.7044 1.8724 0.9232 28 1 3.9571 0.0495 1.4726 29 1 3.7921 -0.8757 -0.0394 30 1 3.2445 -2.8390 1.6961 31 1 4.9070 -2.4411 1.2039 32 1 4.4108 -2.6695 3.7496 33 1 5.3569 -1.2722 3.2048 34 1 4.9924 3.1729 6.5204 35 1 1.7254 -2.0291 3.4387 36 1 1.4419 -0.6272 4.4975 37 1 0.4277 -0.0888 2.3628 38 1 1.9250 0.8627 2.4633 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430421336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:11 Heat of formation + Delta-G solvation = -49.331657 kcal Electronic energy + Delta-G solvation = -18671.748275 eV Core-core repulsion = 15934.387836 eV Total energy + Delta-G solvation = -2737.360439 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.99203 -39.04515 -36.50692 -34.67220 -33.96533 -32.23786 -28.98649 -28.38609 -27.29487 -25.97242 -24.11980 -22.72596 -20.59184 -20.33395 -18.47106 -17.80868 -17.08478 -16.44720 -16.14812 -15.84661 -15.50106 -15.42592 -14.72672 -14.61442 -14.23901 -13.83785 -13.73762 -13.17009 -13.07496 -12.86644 -12.70338 -12.64543 -12.55004 -12.40355 -12.14372 -11.99380 -11.79687 -11.62259 -11.48533 -11.32598 -10.95360 -9.75902 -9.26449 -8.95086 -8.29068 -6.81848 1.35364 1.36084 1.52827 2.21037 2.45884 2.88614 3.11162 3.62596 3.71063 4.03108 4.13396 4.24232 4.32536 4.39234 4.49588 4.53382 4.61704 4.69047 4.75828 4.79180 4.87978 4.95463 4.99603 5.03734 5.09866 5.15611 5.23489 5.30123 5.35229 5.41775 5.51521 5.84997 6.12508 6.19408 6.22346 6.46579 6.88619 7.46607 8.49315 8.68597 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022690 B = 0.009119 C = 0.007355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.713901 B = 3069.863454 C = 3806.183177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.546 5.546 3 C 0.021 3.979 4 C 0.097 3.903 5 H 0.090 0.910 6 C -0.097 4.097 7 C -0.113 4.113 8 C 0.118 3.882 9 N -0.635 5.635 10 C 0.538 3.462 11 O -0.636 6.636 12 C -0.560 4.560 13 H 0.090 0.910 14 C 0.028 3.972 15 N -0.823 5.823 16 Si 0.988 3.012 17 H -0.246 1.246 18 H -0.269 1.269 19 H -0.270 1.270 20 C 0.137 3.863 21 C -0.162 4.162 22 H 0.027 0.973 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.015 0.985 28 H 0.025 0.975 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.272 0.728 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.551 -5.308 -10.701 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.269 5.269 3 C -0.127 4.127 4 C -0.011 4.011 5 H 0.108 0.892 6 C -0.135 4.135 7 C -0.151 4.151 8 C -0.005 4.005 9 N -0.370 5.370 10 C 0.343 3.657 11 O -0.523 6.523 12 C -0.597 4.597 13 H 0.107 0.893 14 C -0.186 4.186 15 N -0.453 5.453 16 Si 0.808 3.192 17 H -0.169 1.169 18 H -0.194 1.194 19 H -0.195 1.195 20 C 0.012 3.988 21 C -0.202 4.202 22 H 0.045 0.955 23 H 0.094 0.906 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.033 0.967 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.632 -5.448 -10.974 15.584 hybrid contribution -0.146 1.261 1.382 1.877 sum -9.777 -4.187 -9.592 14.322 Atomic orbital electron populations 1.22507 0.86687 1.03034 1.00817 1.62554 1.08802 1.13476 1.42100 1.22371 1.00432 0.89667 1.00240 1.20580 0.94706 0.98045 0.87799 0.89178 1.20978 0.94768 0.97556 1.00234 1.21646 1.02602 0.97864 0.93003 1.21526 0.92393 0.92352 0.94214 1.47559 1.06148 1.31712 1.51620 1.18687 0.88023 0.80867 0.78074 1.90531 1.20179 1.77283 1.64344 1.21497 0.94382 1.07595 1.36221 0.89253 1.26946 0.97041 1.00376 0.94263 1.70203 1.16206 1.27227 1.31696 0.85111 0.78944 0.77004 0.78161 1.16878 1.19409 1.19509 1.21188 0.80955 0.99392 0.97247 1.21898 1.01219 1.00313 0.96814 0.95461 0.90584 0.90188 0.92646 0.90132 0.96689 0.95640 0.90373 0.89582 0.89582 0.93372 0.94242 0.91803 0.89952 0.91824 0.89830 0.93998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.16 127.69 1.17 1.53 16 2 N -0.55 -14.09 4.92 -935.02 -4.60 -18.69 16 3 C 0.02 0.59 8.94 127.69 1.14 1.73 16 4 C 0.10 2.70 1.73 42.96 0.07 2.77 16 5 H 0.09 2.19 7.35 -2.38 -0.02 2.17 16 6 C -0.10 -3.03 3.74 29.76 0.11 -2.92 16 7 C -0.11 -3.24 5.71 30.23 0.17 -3.06 16 8 C 0.12 4.68 6.07 86.49 0.53 5.21 16 9 N -0.64 -28.81 2.24 -823.25 -1.84 -30.65 16 10 C 0.54 31.49 7.54 86.36 0.65 32.14 16 11 O -0.64 -43.45 14.35 -4.29 -0.06 -43.52 16 12 C -0.56 -31.70 8.36 24.83 0.21 -31.50 16 13 H 0.09 4.56 5.95 -2.91 -0.02 4.55 16 14 C 0.03 1.60 5.50 85.30 0.47 2.07 16 15 N -0.82 -51.18 11.84 21.83 0.26 -50.92 16 16 Si 0.99 41.46 29.56 68.60 2.03 43.48 16 17 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 20 C 0.14 4.92 5.02 87.38 0.44 5.36 16 21 C -0.16 -5.23 4.29 29.42 0.13 -5.11 16 22 H 0.03 0.59 6.15 -2.39 -0.01 0.57 16 23 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 24 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.66 6.87 -2.38 -0.02 1.65 16 26 H 0.08 1.84 8.12 -2.39 -0.02 1.82 16 27 H 0.01 0.46 6.40 -2.39 -0.02 0.45 16 28 H 0.02 1.01 7.17 -2.39 -0.02 1.00 16 29 H 0.08 2.21 8.04 -2.39 -0.02 2.19 16 30 H 0.09 2.03 7.32 -2.38 -0.02 2.01 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.86 7.02 -2.39 -0.02 1.84 16 34 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 35 H 0.08 2.39 8.07 -2.39 -0.02 2.37 16 36 H 0.06 2.45 6.13 -2.39 -0.01 2.44 16 37 H 0.08 2.31 5.95 -2.39 -0.01 2.30 16 38 H 0.04 1.68 6.21 -2.39 -0.01 1.67 16 Total: -1.00 -75.02 287.86 1.91 -73.11 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 1.04 Total: 18.95 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 5.09 Total: 8.23 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -6.19 Total: -100.27 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.06 Total: -43.52 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -75.02 1.91 -73.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430421336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.783 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds