Wall clock time and date at job start Mon Mar 30 2020 17:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00284 * 2 1 4 4 C 1.46903 * 110.99535 * 123.95179 * 2 1 3 5 5 H 1.09005 * 108.31384 * 185.95721 * 4 2 1 6 6 C 1.52564 * 108.51337 * 68.34359 * 4 2 1 7 7 C 1.50889 * 109.37775 * 153.73553 * 6 4 2 8 8 C 1.53941 * 110.09103 * 91.88123 * 7 6 4 9 9 N 1.47603 * 112.14587 * 319.43709 * 8 7 6 10 10 C 1.34776 * 118.64992 * 137.86892 * 9 8 7 11 11 O 1.21698 * 119.99349 * 355.10458 * 10 9 8 12 12 C 1.46371 * 120.00138 * 175.10609 * 10 9 8 13 13 H 1.07994 * 120.00293 * 5.87439 * 12 10 9 14 14 C 1.40051 * 119.99509 * 185.87310 * 12 10 9 15 15 N 1.30671 * 120.00501 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99614 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46792 * 89.99806 * 16 14 12 18 18 H 1.48495 * 109.46982 * 209.99990 * 16 14 12 19 19 H 1.48499 * 109.47108 * 330.00217 * 16 14 12 20 20 C 1.44582 * 122.70852 * 317.89964 * 9 8 7 21 21 C 1.47005 * 108.51978 * 303.57774 * 4 2 1 22 22 H 1.09006 * 109.47252 * 296.04757 * 1 2 3 23 23 H 1.09003 * 109.47387 * 56.04232 * 1 2 3 24 24 H 1.09002 * 109.47845 * 176.04775 * 1 2 3 25 25 H 1.09000 * 109.46868 * 178.69655 * 3 2 1 26 26 H 1.09000 * 109.46625 * 298.69855 * 3 2 1 27 27 H 1.09001 * 109.47267 * 58.69513 * 3 2 1 28 28 H 1.09004 * 109.49237 * 33.76098 * 6 4 2 29 29 H 1.09003 * 109.49351 * 273.71652 * 6 4 2 30 30 H 1.08998 * 109.36839 * 212.07414 * 7 6 4 31 31 H 1.08996 * 109.36167 * 331.81934 * 7 6 4 32 32 H 1.09000 * 108.94908 * 80.12798 * 8 7 6 33 33 H 1.08998 * 108.94576 * 198.75241 * 8 7 6 34 34 H 0.96995 * 119.99954 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.44692 * 210.74095 * 20 9 8 36 36 H 1.09011 * 109.44505 * 330.67985 * 20 9 8 37 37 H 1.09003 * 109.32703 * 63.77839 * 21 4 2 38 38 H 1.08998 * 109.16944 * 304.22362 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1377 5 1 3.0789 -0.6495 1.1570 6 6 1.6704 -2.2407 0.9206 7 6 2.6837 -3.0891 1.6488 8 6 2.1797 -3.4146 3.0665 9 7 1.5241 -2.2558 3.7037 10 6 0.3881 -2.4583 4.4000 11 8 -0.1250 -3.5617 4.4195 12 6 -0.2285 -1.3513 5.1327 13 1 0.1717 -0.3526 5.0394 14 6 -1.3376 -1.5873 5.9547 15 7 -1.8222 -2.7956 6.0672 16 14 -2.1241 -0.1747 6.8903 17 1 -3.1865 0.4413 6.0554 18 1 -2.7194 -0.6864 8.1508 19 1 -1.0915 0.8441 7.2084 20 6 2.0499 -0.9122 3.6111 21 6 1.4429 -0.2004 2.3770 22 1 -0.3634 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3635 -1.0252 -0.0708 25 1 3.0848 1.3423 0.0234 26 1 1.6650 1.8874 -0.9015 27 1 1.6272 1.9020 0.8781 28 1 1.7048 -2.4677 -0.1450 29 1 0.6733 -2.4541 1.3058 30 1 2.8403 -4.0170 1.0989 31 1 3.6264 -2.5464 1.7180 32 1 1.4667 -4.2370 3.0086 33 1 3.0255 -3.7243 3.6803 34 1 -2.5901 -2.9591 6.6369 35 1 1.7911 -0.3581 4.5135 36 1 3.1345 -0.9532 3.5089 37 1 0.3606 -0.3303 2.3818 38 1 1.6788 0.8628 2.4215 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430421337.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:13 Heat of formation + Delta-G solvation = -49.243112 kcal Electronic energy + Delta-G solvation = -18614.728841 eV Core-core repulsion = 15877.372241 eV Total energy + Delta-G solvation = -2737.356600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.99095 -39.04309 -36.51003 -34.66815 -33.96237 -32.26887 -28.89439 -28.44570 -27.33788 -25.98509 -24.09872 -22.72210 -20.61716 -20.36596 -18.42572 -17.81349 -17.08436 -16.47155 -16.12190 -15.83286 -15.52052 -15.46729 -14.74021 -14.54764 -14.28180 -13.86660 -13.62452 -13.21634 -13.10692 -12.86039 -12.77521 -12.62304 -12.58010 -12.42040 -12.10135 -12.02281 -11.78671 -11.60633 -11.47430 -11.35154 -10.94160 -9.75422 -9.28060 -8.94037 -8.28802 -6.82416 1.36552 1.37756 1.52587 2.21846 2.46148 2.89260 3.09366 3.61898 3.70707 4.02664 4.12184 4.24236 4.32318 4.37301 4.49316 4.53923 4.61833 4.67857 4.75992 4.78540 4.86379 4.95894 4.99306 5.02803 5.08838 5.14238 5.23551 5.29614 5.34853 5.42693 5.47618 5.85281 6.11722 6.19416 6.22052 6.46660 6.88562 7.46819 8.49603 8.68751 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024209 B = 0.008543 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.293747 B = 3276.865918 C = 3950.827769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.548 5.548 3 C 0.020 3.980 4 C 0.096 3.904 5 H 0.091 0.909 6 C -0.096 4.096 7 C -0.113 4.113 8 C 0.116 3.884 9 N -0.634 5.634 10 C 0.538 3.462 11 O -0.636 6.636 12 C -0.564 4.564 13 H 0.090 0.910 14 C 0.028 3.972 15 N -0.824 5.824 16 Si 0.989 3.011 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.246 1.246 20 C 0.134 3.866 21 C -0.160 4.160 22 H 0.019 0.981 23 H 0.080 0.920 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.025 0.975 28 H 0.077 0.923 29 H 0.023 0.977 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.272 0.728 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.849 9.356 -9.461 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.271 5.271 3 C -0.128 4.128 4 C -0.012 4.012 5 H 0.109 0.891 6 C -0.134 4.134 7 C -0.151 4.151 8 C -0.007 4.007 9 N -0.370 5.370 10 C 0.344 3.656 11 O -0.523 6.523 12 C -0.600 4.600 13 H 0.108 0.892 14 C -0.187 4.187 15 N -0.453 5.453 16 Si 0.809 3.191 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.170 1.170 20 C 0.009 3.991 21 C -0.200 4.200 22 H 0.037 0.963 23 H 0.099 0.901 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.096 0.904 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.668 8.418 -9.851 15.590 hybrid contribution -1.134 0.461 1.371 1.837 sum 7.534 8.879 -8.480 14.405 Atomic orbital electron populations 1.22365 0.88307 1.01544 1.00423 1.62507 1.07626 1.14741 1.42260 1.22482 1.01098 0.88198 1.01014 1.20562 0.99819 0.93001 0.87775 0.89133 1.20954 0.98079 0.94169 1.00212 1.21640 0.98908 1.01092 0.93469 1.21538 0.95776 0.89171 0.94229 1.47550 1.26851 1.07449 1.55121 1.18678 0.79452 0.88862 0.78618 1.90531 1.65404 1.28754 1.67638 1.21481 1.14813 0.95312 1.28417 0.89159 1.26966 0.96379 0.98912 0.96397 1.70195 1.19924 1.23663 1.31565 0.85140 0.78844 0.77708 0.77404 1.18901 1.19828 1.16954 1.21235 0.97645 0.82712 0.97520 1.21852 1.00737 1.00464 0.96971 0.96261 0.90118 0.93073 0.90243 0.90509 0.95595 0.90431 0.95796 0.89616 0.89626 0.94055 0.93275 0.91772 0.91407 0.89972 0.94120 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 8.84 127.69 1.13 1.74 16 2 N -0.55 -14.11 4.86 -935.30 -4.55 -18.65 16 3 C 0.02 0.40 9.18 127.69 1.17 1.57 16 4 C 0.10 2.69 1.67 42.91 0.07 2.76 16 5 H 0.09 2.18 7.16 -2.38 -0.02 2.17 16 6 C -0.10 -3.01 4.09 29.76 0.12 -2.89 16 7 C -0.11 -3.25 5.71 30.23 0.17 -3.08 16 8 C 0.12 4.60 6.13 86.49 0.53 5.13 16 9 N -0.63 -28.82 2.24 -823.25 -1.84 -30.67 16 10 C 0.54 31.55 7.54 86.36 0.65 32.20 16 11 O -0.64 -43.46 14.31 -4.34 -0.06 -43.52 16 12 C -0.56 -31.95 8.66 24.83 0.22 -31.73 16 13 H 0.09 4.60 5.89 -2.91 -0.02 4.58 16 14 C 0.03 1.59 5.50 85.31 0.47 2.06 16 15 N -0.82 -51.23 11.84 21.84 0.26 -50.98 16 16 Si 0.99 41.38 29.56 68.60 2.03 43.40 16 17 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 19 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 20 C 0.13 4.81 5.16 87.37 0.45 5.26 16 21 C -0.16 -5.15 4.28 29.37 0.13 -5.02 16 22 H 0.02 0.58 6.26 -2.38 -0.01 0.57 16 23 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.05 1.58 7.12 -2.39 -0.02 1.56 16 25 H 0.08 1.36 8.00 -2.39 -0.02 1.34 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.03 0.54 6.58 -2.39 -0.02 0.52 16 28 H 0.08 2.22 8.05 -2.38 -0.02 2.20 16 29 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.09 2.02 7.32 -2.39 -0.02 2.01 16 32 H 0.04 1.95 6.91 -2.39 -0.02 1.93 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 35 H 0.07 2.62 5.82 -2.38 -0.01 2.61 16 36 H 0.08 2.39 8.07 -2.38 -0.02 2.37 16 37 H 0.04 1.62 6.35 -2.39 -0.02 1.61 16 38 H 0.08 2.25 6.28 -2.39 -0.01 2.23 16 Total: -1.00 -75.12 288.78 1.98 -73.14 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 1.04 Total: 19.27 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 5.11 Total: 8.00 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -6.13 Total: -100.29 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -0.06 Total: -43.52 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -75.12 1.98 -73.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430421337.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.895 kcal (2) G-P(sol) polarization free energy of solvation -75.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds