Wall clock time and date at job start Mon Mar 30 2020 17:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46955 * 2 1 4 4 H 1.09001 * 109.49058 * 54.80494 * 3 2 1 5 5 C 1.53052 * 109.50931 * 294.75006 * 3 2 1 6 6 N 1.46949 * 109.36832 * 181.62147 * 5 3 2 7 7 C 1.46891 * 111.00428 * 183.19022 * 6 5 3 8 8 C 1.53005 * 109.47321 * 302.24624 * 7 6 5 9 9 C 1.46958 * 110.87763 * 59.32137 * 6 5 3 10 10 C 1.53051 * 109.36728 * 300.67810 * 9 6 5 11 11 N 1.46958 * 109.48620 * 174.84982 * 3 2 1 12 12 C 1.46902 * 111.00283 * 303.17741 * 11 3 2 13 13 C 1.52999 * 109.46845 * 304.34087 * 12 11 3 14 14 C 1.50702 * 109.46992 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99742 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99987 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99855 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99891 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47014 * 90.00173 * 18 16 14 20 20 H 1.48502 * 109.47205 * 210.00492 * 18 16 14 21 21 H 1.48500 * 109.46905 * 330.00306 * 18 16 14 22 22 H 1.09004 * 109.47134 * 185.76013 * 1 2 3 23 23 H 1.08996 * 109.46693 * 305.75625 * 1 2 3 24 24 H 1.08993 * 109.47068 * 65.75749 * 1 2 3 25 25 H 1.09008 * 109.46821 * 240.00112 * 2 1 3 26 26 H 1.08994 * 109.47037 * 120.00369 * 2 1 3 27 27 H 1.08998 * 109.48775 * 61.65106 * 5 3 2 28 28 H 1.08994 * 109.48973 * 301.59363 * 5 3 2 29 29 H 1.08998 * 109.47225 * 62.24897 * 7 6 5 30 30 H 1.09002 * 109.47530 * 182.25014 * 7 6 5 31 31 H 1.08998 * 109.47193 * 300.00291 * 8 7 6 32 32 H 1.09002 * 109.46500 * 59.99759 * 8 7 6 33 33 H 1.08994 * 109.47217 * 179.97438 * 8 7 6 34 34 H 1.08996 * 109.49149 * 60.65171 * 9 6 5 35 35 H 1.09007 * 109.48983 * 180.69458 * 9 6 5 36 36 H 1.08999 * 109.49394 * 178.36832 * 10 9 6 37 37 H 1.09005 * 109.49149 * 298.41838 * 10 9 6 38 38 H 1.09005 * 109.46825 * 64.33380 * 12 11 3 39 39 H 1.08997 * 109.46847 * 184.33632 * 12 11 3 40 40 H 1.09005 * 109.46832 * 299.99289 * 13 12 11 41 41 H 1.08998 * 109.47575 * 59.99350 * 13 12 11 42 42 H 0.96997 * 119.99757 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9828 0.8397 5 6 1.6409 2.1257 -1.3101 6 7 2.1655 3.4983 -1.3234 7 6 1.7388 4.2133 -2.5336 8 6 2.2105 3.4476 -3.7714 9 6 3.6298 3.5006 -1.1991 10 6 4.0290 2.8175 0.1111 11 7 3.5043 1.4448 0.1244 12 6 3.9311 0.7298 1.3346 13 6 3.2472 1.3442 2.5576 14 6 3.6855 0.6111 3.7993 15 1 4.3817 -0.2110 3.7235 16 6 3.1976 0.9900 5.0319 17 7 2.3493 1.9908 5.1240 18 14 3.7403 0.0809 6.5709 19 1 4.9534 0.7312 7.1281 20 1 2.6505 0.1197 7.5790 21 1 4.0482 -1.3310 6.2290 22 1 -0.3633 -1.0225 0.1031 23 1 -0.3632 0.6005 0.8339 24 1 -0.3633 0.4219 -0.9370 25 1 1.8934 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 0.5542 2.1509 -1.3908 28 1 2.0554 1.5698 -2.1511 29 1 0.6516 4.2899 -2.5461 30 1 2.1735 5.2129 -2.5374 31 1 3.2977 3.3710 -3.7589 32 1 1.7758 2.4480 -3.7676 33 1 1.8935 3.9779 -4.6694 34 1 4.0669 2.9604 -2.0388 35 1 3.9932 4.5283 -1.1990 36 1 5.1157 2.7922 0.1917 37 1 3.6147 3.3736 0.9521 38 1 3.6533 -0.3211 1.2527 39 1 5.0125 0.8125 1.4431 40 1 3.5250 2.3950 2.6396 41 1 2.1658 1.2616 2.4491 42 1 2.0058 2.2571 5.9912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451726918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:16 Heat of formation + Delta-G solvation = -3.668228 kcal Electronic energy + Delta-G solvation = -18552.499121 eV Core-core repulsion = 15952.951891 eV Total energy + Delta-G solvation = -2599.547230 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.51218 -36.36491 -33.62421 -32.84280 -30.95064 -29.02404 -28.66123 -25.93345 -24.22662 -23.69766 -22.23350 -21.19554 -20.20897 -18.34178 -16.46313 -15.66853 -15.52272 -14.79673 -14.66075 -14.44015 -14.02045 -13.68767 -13.31467 -13.22195 -12.76978 -12.35358 -12.30632 -11.93711 -11.81731 -11.53117 -11.21782 -11.14844 -11.06714 -10.89385 -10.72238 -10.68582 -10.51361 -10.13154 -9.93571 -9.83127 -9.50461 -9.07173 -8.31907 -8.09623 -7.41101 -5.98284 -4.01186 3.32372 3.38753 3.41995 4.11626 4.45150 4.57812 4.98851 5.07451 5.30907 5.36708 5.36773 5.40259 5.42431 5.55156 5.65796 5.71732 5.75720 5.81234 5.87940 5.93414 6.00849 6.15448 6.16102 6.26814 6.33179 6.35423 6.45089 6.50743 6.67299 6.69441 6.80930 7.00047 7.24296 7.25888 7.62652 7.64425 7.75498 7.92124 8.04262 8.45639 9.06215 9.62787 11.12594 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032752 B = 0.005990 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.709456 B = 4673.497771 C = 5003.478512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.085 3.915 4 H 0.062 0.938 5 C 0.063 3.937 6 N -0.538 5.538 7 C 0.051 3.949 8 C -0.192 4.192 9 C 0.058 3.942 10 C 0.054 3.946 11 N -0.540 5.540 12 C 0.055 3.945 13 C -0.007 4.007 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.022 0.978 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.518 1.552 -15.018 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.024 4.024 4 H 0.080 0.920 5 C -0.065 4.065 6 N -0.262 5.262 7 C -0.077 4.077 8 C -0.250 4.250 9 C -0.070 4.070 10 C -0.074 4.074 11 N -0.264 5.264 12 C -0.072 4.072 13 C -0.046 4.046 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.040 0.960 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.611 1.658 -14.895 15.073 hybrid contribution 0.281 -0.377 0.974 1.082 sum -1.330 1.281 -13.921 14.043 Atomic orbital electron populations 1.21768 0.96131 1.01335 1.01401 1.21570 0.95132 0.96141 1.02711 1.21650 0.88703 0.95582 0.96485 0.92046 1.22262 0.99108 0.87712 0.97392 1.62329 1.10835 1.16258 1.36761 1.22125 1.00703 0.97498 0.87408 1.22434 1.01884 1.01491 0.99238 1.22182 0.87412 0.99723 0.97656 1.22089 0.99362 0.89662 0.96336 1.62552 1.09525 1.14565 1.39794 1.22340 0.99271 0.97590 0.88012 1.19646 0.96420 0.96364 0.92124 1.21165 1.26564 1.16389 0.91654 0.92729 1.25011 0.95078 0.95123 0.99079 1.69974 1.31339 1.27538 1.24440 0.86628 0.78231 0.80258 0.83091 1.20714 1.21268 1.19866 0.93018 0.92390 0.93336 0.92284 0.90397 0.90925 0.94241 0.90966 0.91025 0.92498 0.92321 0.92522 0.94328 0.91062 0.90954 0.93136 0.91678 0.92335 0.96649 0.96018 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.53 37.16 0.35 -1.76 16 2 C -0.12 -1.91 5.12 -26.73 -0.14 -2.05 16 3 C 0.08 1.50 1.44 -67.65 -0.10 1.40 16 4 H 0.06 1.31 6.43 -51.93 -0.33 0.97 16 5 C 0.06 0.95 4.07 -3.77 -0.02 0.93 16 6 N -0.54 -7.95 4.92 -234.48 -1.15 -9.11 16 7 C 0.05 0.59 6.10 -3.83 -0.02 0.57 16 8 C -0.19 -1.98 9.20 37.16 0.34 -1.64 16 9 C 0.06 0.86 5.27 -3.77 -0.02 0.84 16 10 C 0.05 0.95 5.31 -3.76 -0.02 0.93 16 11 N -0.54 -10.03 4.73 -226.48 -1.07 -11.10 16 12 C 0.05 1.16 4.74 -3.82 -0.02 1.14 16 13 C -0.01 -0.19 4.18 -27.88 -0.12 -0.31 16 14 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.60 6.90 -51.93 -0.36 0.24 16 25 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 26 H 0.08 1.45 6.04 -51.93 -0.31 1.13 16 27 H 0.07 1.02 6.79 -51.93 -0.35 0.66 16 28 H 0.04 0.58 6.45 -51.93 -0.33 0.24 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 31 H 0.06 0.61 6.62 -51.93 -0.34 0.27 16 32 H 0.06 0.64 6.44 -51.93 -0.33 0.30 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.04 0.55 6.63 -51.93 -0.34 0.21 16 35 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 36 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 37 H 0.05 1.03 6.69 -51.93 -0.35 0.68 16 38 H 0.06 1.36 6.39 -51.93 -0.33 1.03 16 39 H 0.06 1.23 8.06 -51.93 -0.42 0.82 16 40 H 0.02 0.43 6.69 -51.93 -0.35 0.08 16 41 H 0.02 0.60 6.24 -51.93 -0.32 0.27 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 310.75 15.07 4.68 4.68 Total: -1.00 -29.77 310.75 -9.39 -39.16 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.40 Total: -0.70 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.16 Total: -13.37 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -1.49 Total: -46.54 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.77 -9.39 -39.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451726918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.489 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds