Wall clock time and date at job start Mon Mar 30 2020 17:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46955 * 2 1 4 4 H 1.09001 * 109.49058 * 54.80494 * 3 2 1 5 5 C 1.53052 * 109.50931 * 294.75006 * 3 2 1 6 6 N 1.46949 * 109.36832 * 181.62147 * 5 3 2 7 7 C 1.46891 * 111.00428 * 183.19022 * 6 5 3 8 8 C 1.53005 * 109.47321 * 302.24624 * 7 6 5 9 9 C 1.46958 * 110.87763 * 59.32137 * 6 5 3 10 10 C 1.53051 * 109.36728 * 300.67810 * 9 6 5 11 11 N 1.46958 * 109.48620 * 174.84982 * 3 2 1 12 12 C 1.46902 * 111.00283 * 303.17741 * 11 3 2 13 13 C 1.52999 * 109.46845 * 304.34087 * 12 11 3 14 14 C 1.50702 * 109.46992 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99742 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99987 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99855 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99891 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47014 * 90.00173 * 18 16 14 20 20 H 1.48502 * 109.47205 * 210.00492 * 18 16 14 21 21 H 1.48500 * 109.46905 * 330.00306 * 18 16 14 22 22 H 1.09004 * 109.47134 * 185.76013 * 1 2 3 23 23 H 1.08996 * 109.46693 * 305.75625 * 1 2 3 24 24 H 1.08993 * 109.47068 * 65.75749 * 1 2 3 25 25 H 1.09008 * 109.46821 * 240.00112 * 2 1 3 26 26 H 1.08994 * 109.47037 * 120.00369 * 2 1 3 27 27 H 1.08998 * 109.48775 * 61.65106 * 5 3 2 28 28 H 1.08994 * 109.48973 * 301.59363 * 5 3 2 29 29 H 1.08998 * 109.47225 * 62.24897 * 7 6 5 30 30 H 1.09002 * 109.47530 * 182.25014 * 7 6 5 31 31 H 1.08998 * 109.47193 * 300.00291 * 8 7 6 32 32 H 1.09002 * 109.46500 * 59.99759 * 8 7 6 33 33 H 1.08994 * 109.47217 * 179.97438 * 8 7 6 34 34 H 1.08996 * 109.49149 * 60.65171 * 9 6 5 35 35 H 1.09007 * 109.48983 * 180.69458 * 9 6 5 36 36 H 1.08999 * 109.49394 * 178.36832 * 10 9 6 37 37 H 1.09005 * 109.49149 * 298.41838 * 10 9 6 38 38 H 1.09005 * 109.46825 * 64.33380 * 12 11 3 39 39 H 1.08997 * 109.46847 * 184.33632 * 12 11 3 40 40 H 1.09005 * 109.46832 * 299.99289 * 13 12 11 41 41 H 1.08998 * 109.47575 * 59.99350 * 13 12 11 42 42 H 0.96997 * 119.99757 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9828 0.8397 5 6 1.6409 2.1257 -1.3101 6 7 2.1655 3.4983 -1.3234 7 6 1.7388 4.2133 -2.5336 8 6 2.2105 3.4476 -3.7714 9 6 3.6298 3.5006 -1.1991 10 6 4.0290 2.8175 0.1111 11 7 3.5043 1.4448 0.1244 12 6 3.9311 0.7298 1.3346 13 6 3.2472 1.3442 2.5576 14 6 3.6855 0.6111 3.7993 15 1 4.3817 -0.2110 3.7235 16 6 3.1976 0.9900 5.0319 17 7 2.3493 1.9908 5.1240 18 14 3.7403 0.0809 6.5709 19 1 4.9534 0.7312 7.1281 20 1 2.6505 0.1197 7.5790 21 1 4.0482 -1.3310 6.2290 22 1 -0.3633 -1.0225 0.1031 23 1 -0.3632 0.6005 0.8339 24 1 -0.3633 0.4219 -0.9370 25 1 1.8934 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 0.5542 2.1509 -1.3908 28 1 2.0554 1.5698 -2.1511 29 1 0.6516 4.2899 -2.5461 30 1 2.1735 5.2129 -2.5374 31 1 3.2977 3.3710 -3.7589 32 1 1.7758 2.4480 -3.7676 33 1 1.8935 3.9779 -4.6694 34 1 4.0669 2.9604 -2.0388 35 1 3.9932 4.5283 -1.1990 36 1 5.1157 2.7922 0.1917 37 1 3.6147 3.3736 0.9521 38 1 3.6533 -0.3211 1.2527 39 1 5.0125 0.8125 1.4431 40 1 3.5250 2.3950 2.6396 41 1 2.1658 1.2616 2.4491 42 1 2.0058 2.2571 5.9912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451726918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:15 Heat of formation + Delta-G solvation = -24.137970 kcal Electronic energy + Delta-G solvation = -18553.386756 eV Core-core repulsion = 15952.951891 eV Total energy + Delta-G solvation = -2600.434865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86461 -37.70012 -35.29044 -34.63455 -32.41135 -30.32844 -30.20838 -27.46825 -25.50566 -25.42750 -23.63938 -22.75782 -21.46459 -19.84073 -18.58722 -16.99285 -16.85865 -16.55167 -16.15999 -15.83618 -15.30832 -14.91562 -14.69236 -14.56377 -14.34336 -14.02827 -13.72520 -13.33161 -13.08220 -12.92534 -12.79990 -12.61943 -12.50001 -12.43520 -12.24832 -12.06854 -11.89887 -11.72294 -11.52539 -11.41427 -11.25158 -11.00580 -10.54354 -9.24511 -9.04964 -8.20545 -6.33114 1.38004 1.39412 1.50669 2.39087 3.01645 3.06757 3.11735 3.86284 3.98085 4.08736 4.22996 4.30816 4.36529 4.37714 4.43248 4.52542 4.59175 4.60512 4.63800 4.72926 4.77618 4.90425 4.91267 4.99039 5.00451 5.06330 5.09695 5.13529 5.20208 5.35601 5.37167 5.41975 5.50768 5.60750 5.76041 6.01480 6.09658 6.21764 6.30616 6.37831 6.84906 7.36305 8.90448 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032752 B = 0.005990 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.709456 B = 4673.497771 C = 5003.478512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.085 3.915 4 H 0.015 0.985 5 C 0.074 3.926 6 N -0.562 5.562 7 C 0.051 3.949 8 C -0.184 4.184 9 C 0.068 3.932 10 C 0.052 3.948 11 N -0.530 5.530 12 C 0.069 3.931 13 C 0.008 3.992 14 C -0.541 4.541 15 H 0.061 0.939 16 C 0.001 3.999 17 N -0.934 5.934 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.261 1.261 22 H 0.066 0.934 23 H 0.034 0.966 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.011 0.989 38 H 0.070 0.930 39 H 0.061 0.939 40 H -0.018 1.018 41 H -0.005 1.005 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 0.830 -16.608 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.024 4.024 4 H 0.033 0.967 5 C -0.054 4.054 6 N -0.286 5.286 7 C -0.076 4.076 8 C -0.243 4.243 9 C -0.060 4.060 10 C -0.077 4.077 11 N -0.253 5.253 12 C -0.058 4.058 13 C -0.030 4.030 14 C -0.579 4.579 15 H 0.079 0.921 16 C -0.196 4.196 17 N -0.574 5.574 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.185 1.185 22 H 0.085 0.915 23 H 0.053 0.947 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.030 0.970 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.000 1.000 41 H 0.013 0.987 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.290 0.937 -16.511 16.588 hybrid contribution 0.157 -0.091 1.457 1.468 sum -1.133 0.846 -15.054 15.121 Atomic orbital electron populations 1.21724 0.94477 1.02114 1.01729 1.21528 0.96623 0.94914 1.02090 1.21685 0.87660 0.96413 0.96638 0.96735 1.22137 0.99822 0.87919 0.95544 1.62298 1.10810 1.16295 1.39199 1.22201 1.01221 0.97663 0.86557 1.22356 1.01494 1.01230 0.99230 1.22086 0.87747 1.00356 0.95797 1.22165 0.99669 0.88839 0.96988 1.62633 1.10279 1.14968 1.37414 1.22093 0.98773 0.97778 0.87204 1.19437 0.95058 0.94515 0.93983 1.21616 1.26724 1.16747 0.92827 0.92059 1.25976 0.94929 0.95899 1.02832 1.70126 1.32606 1.29214 1.25428 0.85459 0.77923 0.79328 0.78422 1.19806 1.20827 1.18516 0.91464 0.94706 0.90865 0.90295 0.93374 0.89773 0.93016 0.90283 0.90090 0.92894 0.92715 0.90587 0.93077 0.89442 0.90125 0.97029 0.91198 0.92087 1.00013 0.98709 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.53 71.98 0.69 -3.29 16 2 C -0.11 -3.68 5.12 30.60 0.16 -3.53 16 3 C 0.08 3.06 1.44 44.92 0.06 3.13 16 4 H 0.01 0.67 6.43 -2.39 -0.02 0.65 16 5 C 0.07 2.11 4.07 86.31 0.35 2.46 16 6 N -0.56 -15.94 4.92 -895.75 -4.40 -20.34 16 7 C 0.05 1.05 6.10 86.31 0.53 1.58 16 8 C -0.18 -3.22 9.20 71.98 0.66 -2.55 16 9 C 0.07 1.91 5.27 86.31 0.45 2.37 16 10 C 0.05 1.86 5.31 86.31 0.46 2.32 16 11 N -0.53 -19.93 4.73 -870.45 -4.12 -24.05 16 12 C 0.07 3.02 4.74 86.30 0.41 3.42 16 13 C 0.01 0.45 4.18 29.85 0.12 0.58 16 14 C -0.54 -31.43 9.11 25.60 0.23 -31.19 16 15 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 16 C 0.00 0.08 5.46 84.65 0.46 0.54 16 17 N -0.93 -58.43 13.29 21.45 0.28 -58.15 16 18 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 22 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 1.66 6.90 -2.39 -0.02 1.65 16 25 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 26 H 0.05 1.83 6.04 -2.39 -0.01 1.82 16 27 H 0.08 2.20 6.79 -2.39 -0.02 2.19 16 28 H 0.05 1.38 6.45 -2.39 -0.02 1.36 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 31 H 0.05 0.97 6.62 -2.39 -0.02 0.96 16 32 H 0.05 1.00 6.44 -2.39 -0.02 0.99 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.33 6.63 -2.39 -0.02 1.32 16 35 H 0.09 2.17 8.11 -2.38 -0.02 2.15 16 36 H 0.08 2.69 8.09 -2.39 -0.02 2.68 16 37 H 0.01 0.50 6.69 -2.38 -0.02 0.48 16 38 H 0.07 2.98 6.39 -2.38 -0.02 2.96 16 39 H 0.06 2.61 8.06 -2.39 -0.02 2.59 16 40 H -0.02 -1.12 6.69 -2.38 -0.02 -1.13 16 41 H -0.01 -0.32 6.24 -2.39 -0.01 -0.33 16 42 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -66.30 310.75 -0.66 -66.96 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.97 Total: 12.64 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 4.59 Total: -24.16 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -8.24 Total: -102.54 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -66.30 -0.66 -66.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451726918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.822 kcal (2) G-P(sol) polarization free energy of solvation -66.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds