Wall clock time and date at job start Mon Mar 30 2020 17:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47022 * 2 1 4 4 H 1.08999 * 109.48455 * 302.54752 * 3 2 1 5 5 C 1.53046 * 109.48892 * 62.61702 * 3 2 1 6 6 N 1.46960 * 109.36314 * 178.36818 * 5 3 2 7 7 C 1.46895 * 111.00244 * 176.81280 * 6 5 3 8 8 C 1.52999 * 109.47246 * 189.84485 * 7 6 5 9 9 C 1.46958 * 110.87718 * 300.67878 * 6 5 3 10 10 C 1.53055 * 109.36581 * 59.32395 * 9 6 5 11 11 N 1.46958 * 109.35900 * 301.59361 * 10 9 6 12 12 C 1.46904 * 110.99824 * 183.18682 * 11 10 9 13 13 C 1.53005 * 109.46792 * 65.54621 * 12 11 10 14 14 C 1.50695 * 109.47006 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00165 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00314 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99667 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00358 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47159 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47238 * 120.00307 * 18 16 14 21 21 H 1.48504 * 109.47118 * 240.00354 * 18 16 14 22 22 H 1.09003 * 109.46983 * 53.86942 * 1 2 3 23 23 H 1.08999 * 109.46968 * 173.87015 * 1 2 3 24 24 H 1.08998 * 109.47130 * 293.87110 * 1 2 3 25 25 H 1.08995 * 109.47204 * 239.99192 * 2 1 3 26 26 H 1.09001 * 109.46552 * 119.99959 * 2 1 3 27 27 H 1.08995 * 109.48997 * 298.33301 * 5 3 2 28 28 H 1.08998 * 109.48896 * 58.38242 * 5 3 2 29 29 H 1.09000 * 109.47006 * 309.84503 * 7 6 5 30 30 H 1.08999 * 109.47431 * 69.84359 * 7 6 5 31 31 H 1.08999 * 109.47008 * 59.99615 * 8 7 6 32 32 H 1.09002 * 109.47478 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47132 * 299.99940 * 8 7 6 34 34 H 1.08997 * 109.49430 * 299.35274 * 9 6 5 35 35 H 1.09000 * 109.48863 * 179.28365 * 9 6 5 36 36 H 1.08999 * 109.48952 * 61.56050 * 10 9 6 37 37 H 1.08998 * 109.48985 * 181.60734 * 10 9 6 38 38 H 1.08999 * 109.47035 * 185.54309 * 12 11 10 39 39 H 1.08994 * 109.47175 * 305.54703 * 12 11 10 40 40 H 1.08992 * 109.47175 * 300.00353 * 13 12 11 41 41 H 1.09007 * 109.46926 * 60.00077 * 13 12 11 42 42 H 0.97001 * 119.99923 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6400 1.9695 -0.8662 5 6 1.5846 2.1451 1.2811 6 7 2.1086 3.5180 1.2966 7 6 1.6301 4.2509 2.4762 8 6 1.9877 5.7319 2.3362 9 6 3.5770 3.5188 1.2360 10 6 4.0324 2.8162 -0.0452 11 7 3.5084 1.4433 -0.0606 12 6 3.9869 0.7103 -1.2404 13 6 5.5038 0.5315 -1.1489 14 6 5.9946 -0.2209 -2.3588 15 1 5.2949 -0.5394 -3.1173 16 6 7.3373 -0.5020 -2.4980 17 7 8.1895 -0.1138 -1.5746 18 14 7.9459 -1.4340 -3.9981 19 1 6.7963 -1.7543 -4.8819 20 1 8.9214 -0.5953 -4.7399 21 1 8.6039 -2.6930 -3.5652 22 1 -0.3633 0.6060 -0.8300 23 1 -0.3633 -1.0218 -0.1097 24 1 -0.3633 0.4159 0.9397 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.4955 2.1712 1.3140 28 1 1.9617 1.6018 2.1475 29 1 0.5482 4.1444 2.5560 30 1 2.1020 3.8463 3.3716 31 1 1.5158 6.1366 1.4409 32 1 1.6322 6.2759 3.2114 33 1 3.0696 5.8385 2.2565 34 1 3.9771 2.9914 2.1018 35 1 3.9403 4.5464 1.2359 36 1 3.6550 3.3593 -0.9117 37 1 5.1216 2.7904 -0.0784 38 1 3.5075 -0.2677 -1.2796 39 1 3.7410 1.2720 -2.1415 40 1 5.9832 1.5095 -1.1096 41 1 5.7497 -0.0302 -0.2477 42 1 9.1340 -0.3118 -1.6723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451726919.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:20 Heat of formation + Delta-G solvation = -5.173585 kcal Electronic energy + Delta-G solvation = -18129.031182 eV Core-core repulsion = 15529.418675 eV Total energy + Delta-G solvation = -2599.612507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -39.40390 -36.15072 -34.00086 -32.80448 -31.16263 -29.39744 -28.90822 -25.78235 -24.38185 -23.58507 -22.22354 -20.47213 -20.26981 -19.22369 -16.58298 -15.85304 -15.34392 -14.98101 -14.67184 -14.36949 -13.99013 -13.88836 -13.57107 -13.35492 -12.90625 -12.44542 -12.22131 -12.01254 -11.93539 -11.59266 -11.37631 -11.12294 -11.10120 -10.99506 -10.91517 -10.69434 -10.50593 -10.33311 -10.07692 -9.62870 -9.28198 -9.05455 -8.30840 -8.23567 -7.64052 -5.97556 -3.99565 3.32499 3.39893 3.43987 3.97849 4.36684 4.53939 4.92358 5.04122 5.16693 5.23418 5.29390 5.38497 5.43328 5.45451 5.52241 5.63069 5.68357 5.71483 5.74401 5.85383 5.89876 6.01472 6.07722 6.11681 6.16530 6.23576 6.35241 6.40022 6.46622 6.52377 6.62522 7.04129 7.15118 7.17845 7.58259 7.64877 7.84929 7.93970 8.11689 8.46840 9.08013 9.64047 11.13925 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028321 B = 0.005510 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.432320 B = 5080.845421 C = 5879.921390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.087 3.913 4 H 0.041 0.959 5 C 0.065 3.935 6 N -0.543 5.543 7 C 0.051 3.949 8 C -0.148 4.148 9 C 0.056 3.944 10 C 0.058 3.942 11 N -0.536 5.536 12 C 0.059 3.941 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.018 0.982 40 H 0.016 0.984 41 H 0.023 0.977 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.130 6.846 7.062 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.022 4.022 4 H 0.059 0.941 5 C -0.063 4.063 6 N -0.268 5.268 7 C -0.077 4.077 8 C -0.206 4.206 9 C -0.072 4.072 10 C -0.070 4.070 11 N -0.261 5.261 12 C -0.067 4.067 13 C -0.009 4.009 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.036 0.964 40 H 0.034 0.966 41 H 0.042 0.958 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.944 6.852 7.109 17.086 hybrid contribution 0.486 -0.497 -0.801 1.061 sum -13.457 6.355 6.308 16.164 Atomic orbital electron populations 1.21789 0.96074 1.01370 1.01420 1.21647 0.94895 0.96105 1.03328 1.21624 0.89128 0.95140 0.96310 0.94093 1.22205 0.98884 0.87712 0.97501 1.62208 1.09730 1.15013 1.39817 1.22029 0.99954 0.94513 0.91201 1.21795 1.01873 0.95216 1.01718 1.22244 0.86762 0.99996 0.98171 1.22149 1.00967 0.88302 0.95618 1.62266 1.06612 1.14190 1.43058 1.22411 0.99978 0.96408 0.87933 1.19093 0.87595 0.97023 0.97198 1.21238 0.92639 1.35858 1.06129 0.92783 1.24987 0.96973 0.96001 0.96334 1.69987 1.02646 1.46816 1.33865 0.86558 0.78804 0.79675 0.83083 1.19773 1.21060 1.21009 0.92910 0.92815 0.92955 0.90883 0.91288 0.90860 0.94284 0.91222 0.95112 0.91986 0.92603 0.92518 0.94152 0.90569 0.94823 0.89166 0.91489 0.96363 0.96578 0.95840 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.45 37.16 0.35 -1.32 16 2 C -0.12 -1.73 5.21 -26.73 -0.14 -1.87 16 3 C 0.09 1.37 2.06 -67.66 -0.14 1.23 16 4 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 5 C 0.07 0.90 4.55 -3.77 -0.02 0.88 16 6 N -0.54 -7.51 4.71 -234.47 -1.10 -8.61 16 7 C 0.05 0.57 5.68 -3.83 -0.02 0.55 16 8 C -0.15 -1.45 9.84 37.16 0.37 -1.09 16 9 C 0.06 0.84 5.41 -3.76 -0.02 0.82 16 10 C 0.06 1.03 5.40 -3.76 -0.02 1.01 16 11 N -0.54 -10.10 4.53 -226.49 -1.03 -11.12 16 12 C 0.06 1.28 4.66 -3.82 -0.02 1.26 16 13 C 0.03 0.74 4.89 -27.88 -0.14 0.61 16 14 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.53 6.86 -51.93 -0.36 0.17 16 25 H 0.07 1.13 6.02 -51.93 -0.31 0.82 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.89 6.66 -51.93 -0.35 0.54 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.70 8.03 -51.93 -0.42 0.29 16 30 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.58 6.49 -51.93 -0.34 0.24 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.02 6.33 -51.93 -0.33 0.69 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.77 6.32 -51.93 -0.33 1.44 16 38 H 0.07 1.42 5.71 -51.93 -0.30 1.12 16 39 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 40 H 0.02 0.44 6.47 -51.93 -0.34 0.11 16 41 H 0.02 0.67 8.14 -51.92 -0.42 0.24 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 317.71 15.07 4.79 4.79 Total: -1.00 -29.96 317.71 -9.50 -39.47 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -7.67 Total: -3.46 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -0.21 Total: -11.50 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -1.39 Total: -46.08 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.96 -9.50 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451726919.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.292 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds