Wall clock time and date at job start Mon Mar 30 2020 17:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47022 * 2 1 4 4 H 1.08999 * 109.48455 * 302.54752 * 3 2 1 5 5 C 1.53046 * 109.48892 * 62.61702 * 3 2 1 6 6 N 1.46960 * 109.36314 * 178.36818 * 5 3 2 7 7 C 1.46895 * 111.00244 * 176.81280 * 6 5 3 8 8 C 1.52999 * 109.47246 * 189.84485 * 7 6 5 9 9 C 1.46958 * 110.87718 * 300.67878 * 6 5 3 10 10 C 1.53055 * 109.36581 * 59.32395 * 9 6 5 11 11 N 1.46958 * 109.35900 * 301.59361 * 10 9 6 12 12 C 1.46904 * 110.99824 * 183.18682 * 11 10 9 13 13 C 1.53005 * 109.46792 * 65.54621 * 12 11 10 14 14 C 1.50695 * 109.47006 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00165 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00314 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99667 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00358 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47159 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47238 * 120.00307 * 18 16 14 21 21 H 1.48504 * 109.47118 * 240.00354 * 18 16 14 22 22 H 1.09003 * 109.46983 * 53.86942 * 1 2 3 23 23 H 1.08999 * 109.46968 * 173.87015 * 1 2 3 24 24 H 1.08998 * 109.47130 * 293.87110 * 1 2 3 25 25 H 1.08995 * 109.47204 * 239.99192 * 2 1 3 26 26 H 1.09001 * 109.46552 * 119.99959 * 2 1 3 27 27 H 1.08995 * 109.48997 * 298.33301 * 5 3 2 28 28 H 1.08998 * 109.48896 * 58.38242 * 5 3 2 29 29 H 1.09000 * 109.47006 * 309.84503 * 7 6 5 30 30 H 1.08999 * 109.47431 * 69.84359 * 7 6 5 31 31 H 1.08999 * 109.47008 * 59.99615 * 8 7 6 32 32 H 1.09002 * 109.47478 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47132 * 299.99940 * 8 7 6 34 34 H 1.08997 * 109.49430 * 299.35274 * 9 6 5 35 35 H 1.09000 * 109.48863 * 179.28365 * 9 6 5 36 36 H 1.08999 * 109.48952 * 61.56050 * 10 9 6 37 37 H 1.08998 * 109.48985 * 181.60734 * 10 9 6 38 38 H 1.08999 * 109.47035 * 185.54309 * 12 11 10 39 39 H 1.08994 * 109.47175 * 305.54703 * 12 11 10 40 40 H 1.08992 * 109.47175 * 300.00353 * 13 12 11 41 41 H 1.09007 * 109.46926 * 60.00077 * 13 12 11 42 42 H 0.97001 * 119.99923 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6400 1.9695 -0.8662 5 6 1.5846 2.1451 1.2811 6 7 2.1086 3.5180 1.2966 7 6 1.6301 4.2509 2.4762 8 6 1.9877 5.7319 2.3362 9 6 3.5770 3.5188 1.2360 10 6 4.0324 2.8162 -0.0452 11 7 3.5084 1.4433 -0.0606 12 6 3.9869 0.7103 -1.2404 13 6 5.5038 0.5315 -1.1489 14 6 5.9946 -0.2209 -2.3588 15 1 5.2949 -0.5394 -3.1173 16 6 7.3373 -0.5020 -2.4980 17 7 8.1895 -0.1138 -1.5746 18 14 7.9459 -1.4340 -3.9981 19 1 6.7963 -1.7543 -4.8819 20 1 8.9214 -0.5953 -4.7399 21 1 8.6039 -2.6930 -3.5652 22 1 -0.3633 0.6060 -0.8300 23 1 -0.3633 -1.0218 -0.1097 24 1 -0.3633 0.4159 0.9397 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.4955 2.1712 1.3140 28 1 1.9617 1.6018 2.1475 29 1 0.5482 4.1444 2.5560 30 1 2.1020 3.8463 3.3716 31 1 1.5158 6.1366 1.4409 32 1 1.6322 6.2759 3.2114 33 1 3.0696 5.8385 2.2565 34 1 3.9771 2.9914 2.1018 35 1 3.9403 4.5464 1.2359 36 1 3.6550 3.3593 -0.9117 37 1 5.1216 2.7904 -0.0784 38 1 3.5075 -0.2677 -1.2796 39 1 3.7410 1.2720 -2.1415 40 1 5.9832 1.5095 -1.1096 41 1 5.7497 -0.0302 -0.2477 42 1 9.1340 -0.3118 -1.6723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451726919.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:18 Heat of formation + Delta-G solvation = -25.056065 kcal Electronic energy + Delta-G solvation = -18129.893351 eV Core-core repulsion = 15529.418675 eV Total energy + Delta-G solvation = -2600.474676 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.69917 -37.43077 -35.58153 -34.59278 -32.50984 -30.81880 -30.30180 -27.35163 -25.56541 -25.33000 -23.32196 -22.13798 -21.51064 -20.58930 -18.61223 -17.21781 -16.67808 -16.42250 -16.27654 -15.68072 -15.37744 -15.28578 -14.89981 -14.46953 -14.32244 -13.94657 -13.77979 -13.35894 -13.08770 -12.88838 -12.72221 -12.59044 -12.54695 -12.41890 -12.21350 -12.14199 -11.84423 -11.77108 -11.55479 -11.33512 -11.15500 -10.97762 -10.53571 -9.36702 -9.17013 -8.20535 -6.31861 1.39775 1.40116 1.53610 2.39870 2.90856 3.00093 3.12957 3.81923 3.93338 4.01360 4.17625 4.26268 4.32264 4.33818 4.43440 4.49477 4.53531 4.61322 4.66468 4.74221 4.74469 4.84589 4.90538 4.91340 5.00880 5.02407 5.11842 5.12968 5.22825 5.32057 5.37305 5.43784 5.46910 5.65165 5.78037 6.01617 6.04702 6.18714 6.34263 6.35202 6.85121 7.37331 8.91940 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028321 B = 0.005510 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.432320 B = 5080.845421 C = 5879.921390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.086 3.914 4 H 0.035 0.965 5 C 0.071 3.929 6 N -0.549 5.549 7 C 0.050 3.950 8 C -0.145 4.145 9 C 0.067 3.933 10 C 0.059 3.941 11 N -0.547 5.547 12 C 0.077 3.923 13 C 0.038 3.962 14 C -0.543 4.543 15 H 0.059 0.941 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.277 1.277 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.032 0.968 29 H 0.087 0.913 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.030 0.970 35 H 0.093 0.907 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.013 0.987 40 H -0.007 1.007 41 H -0.009 1.009 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.947 6.966 6.994 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.022 4.022 4 H 0.053 0.947 5 C -0.057 4.057 6 N -0.275 5.275 7 C -0.077 4.077 8 C -0.202 4.202 9 C -0.061 4.061 10 C -0.069 4.069 11 N -0.272 5.272 12 C -0.050 4.050 13 C 0.001 3.999 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.202 1.202 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.050 0.950 29 H 0.105 0.895 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.111 0.889 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.031 0.969 40 H 0.011 0.989 41 H 0.009 0.991 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.787 6.983 7.051 18.647 hybrid contribution 1.047 -0.500 -0.731 1.371 sum -14.740 6.484 6.320 17.299 Atomic orbital electron populations 1.21730 0.93215 1.02433 1.02439 1.21621 0.97339 0.94690 1.02108 1.21758 0.86638 0.96485 0.97318 0.94733 1.22191 1.00303 0.87480 0.95765 1.62236 1.08495 1.15154 1.41577 1.22145 1.00904 0.94795 0.89894 1.21776 1.01434 0.94477 1.02560 1.22093 0.88016 1.00246 0.95783 1.22091 0.99358 0.88189 0.97280 1.62217 1.09111 1.14536 1.41325 1.22039 0.96768 0.97200 0.88996 1.18903 0.90829 0.94922 0.95240 1.21640 0.93329 1.36332 1.06876 0.92294 1.25954 0.97111 0.96814 0.99666 1.70122 1.03141 1.47913 1.36032 0.85382 0.78418 0.78191 0.78937 1.18572 1.20328 1.20250 0.92533 0.91668 0.91359 0.92629 0.91964 0.88160 0.94951 0.89459 0.95066 0.92306 0.90543 0.93229 0.95141 0.88932 0.95300 0.91982 0.90970 0.96916 0.98909 0.99093 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.45 71.98 0.68 -2.11 16 2 C -0.12 -3.29 5.21 30.60 0.16 -3.13 16 3 C 0.09 2.66 2.06 44.92 0.09 2.75 16 4 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 5 C 0.07 1.82 4.55 86.31 0.39 2.21 16 6 N -0.55 -14.27 4.71 -895.73 -4.22 -18.49 16 7 C 0.05 0.98 5.68 86.30 0.49 1.47 16 8 C -0.14 -2.49 9.84 71.98 0.71 -1.78 16 9 C 0.07 1.98 5.41 86.31 0.47 2.45 16 10 C 0.06 2.19 5.40 86.31 0.47 2.65 16 11 N -0.55 -21.11 4.53 -870.48 -3.94 -25.06 16 12 C 0.08 3.45 4.66 86.30 0.40 3.85 16 13 C 0.04 2.13 4.89 29.85 0.15 2.27 16 14 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 0.14 5.46 84.65 0.46 0.60 16 17 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 18 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 24 H 0.07 1.15 6.86 -2.39 -0.02 1.13 16 25 H 0.06 1.71 6.02 -2.39 -0.01 1.70 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.10 2.07 6.66 -2.39 -0.02 2.06 16 28 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 1.44 8.03 -2.39 -0.02 1.43 16 30 H 0.03 0.63 8.12 -2.39 -0.02 0.61 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 0.92 6.49 -2.39 -0.02 0.90 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 2.43 6.33 -2.39 -0.02 2.41 16 36 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 2.60 6.32 -2.39 -0.02 2.59 16 38 H 0.07 3.13 5.71 -2.39 -0.01 3.12 16 39 H 0.01 0.57 8.13 -2.39 -0.02 0.55 16 40 H -0.01 -0.44 6.47 -2.39 -0.02 -0.45 16 41 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 42 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -65.54 317.71 -0.20 -65.74 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.95 Total: 8.69 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 4.70 Total: -20.31 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -7.88 Total: -101.09 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -65.54 -0.20 -65.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451726919.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.680 kcal (2) G-P(sol) polarization free energy of solvation -65.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds