Wall clock time and date at job start Mon Mar 30 2020 17:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47361 * 2 1 4 4 N 1.46907 * 109.47199 * 120.00144 * 2 1 3 5 5 C 1.47441 * 110.99934 * 175.82169 * 4 2 1 6 6 C 1.54319 * 107.36683 * 236.65844 * 5 4 2 7 7 C 1.55396 * 102.90018 * 337.89378 * 6 5 4 8 8 H 1.08994 * 110.87575 * 277.39374 * 7 6 5 9 9 N 1.46906 * 111.05495 * 153.64910 * 7 6 5 10 10 C 1.46895 * 111.00143 * 61.01834 * 9 7 6 11 11 C 1.46906 * 110.99672 * 184.97015 * 9 7 6 12 12 C 1.53003 * 109.46894 * 169.99972 * 11 9 7 13 13 C 1.50700 * 109.46985 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99803 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00080 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00383 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99913 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47071 * 90.00112 * 17 15 13 19 19 H 1.48499 * 109.47131 * 209.99818 * 17 15 13 20 20 H 1.48500 * 109.47144 * 330.00058 * 17 15 13 21 21 C 1.47834 * 110.99696 * 54.97440 * 4 2 1 22 22 H 1.08993 * 109.47454 * 294.31641 * 1 2 3 23 23 H 1.08998 * 109.46837 * 54.32171 * 1 2 3 24 24 H 1.08999 * 109.46705 * 174.31332 * 1 2 3 25 25 H 1.08998 * 109.47695 * 239.99927 * 2 1 3 26 26 H 1.09001 * 109.46807 * 300.00396 * 3 2 1 27 27 H 1.09005 * 109.46459 * 59.99620 * 3 2 1 28 28 H 1.09000 * 109.47167 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.89185 * 356.14353 * 5 4 2 30 30 H 1.08999 * 109.89127 * 117.17473 * 5 4 2 31 31 H 1.09000 * 110.70331 * 96.18255 * 6 5 4 32 32 H 1.09003 * 110.70596 * 219.41598 * 6 5 4 33 33 H 1.08999 * 109.47223 * 65.57039 * 10 9 7 34 34 H 1.08997 * 109.47161 * 185.57543 * 10 9 7 35 35 H 1.09002 * 109.46955 * 305.57803 * 10 9 7 36 36 H 1.08996 * 109.46934 * 290.00205 * 11 9 7 37 37 H 1.09001 * 109.47070 * 49.99777 * 11 9 7 38 38 H 1.08993 * 109.47099 * 300.00160 * 12 11 9 39 39 H 1.09003 * 109.46916 * 59.99890 * 12 11 9 40 40 H 0.97002 * 120.00270 * 179.97438 * 16 15 13 41 41 H 1.09003 * 110.38015 * 265.19113 * 21 4 2 42 42 H 1.09003 * 110.37833 * 27.42729 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1995 5 6 3.4901 -0.7997 1.1844 6 6 3.8441 -2.2970 1.3031 7 6 2.5672 -2.9054 1.9466 8 1 2.5776 -2.7749 3.0286 9 7 2.4218 -4.3236 1.5918 10 6 3.5649 -5.1077 2.0779 11 6 1.1557 -4.8667 2.1019 12 6 0.9217 -6.2575 1.5087 13 6 -0.3768 -6.8149 2.0324 14 1 -0.9750 -6.2354 2.7200 15 6 -0.8006 -8.0652 1.6347 16 7 -1.9335 -8.5519 2.0922 17 14 0.2345 -9.0679 0.4461 18 1 1.1913 -9.9082 1.2101 19 1 -0.6507 -9.9402 -0.3668 20 1 0.9857 -8.1524 -0.4500 21 6 1.4494 -2.0531 1.2955 22 1 -0.3634 0.4231 0.9364 23 1 -0.3633 0.5994 -0.8348 24 1 -0.3633 -1.0226 -0.1018 25 1 1.8934 -0.5138 -0.8899 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 3.8816 -0.3991 0.2493 30 1 3.9105 -0.2513 2.0274 31 1 4.0229 -2.7299 0.3189 32 1 4.7096 -2.4382 1.9505 33 1 3.5703 -5.1049 3.1678 34 1 3.4816 -6.1331 1.7176 35 1 4.4910 -4.6670 1.7089 36 1 1.2027 -4.9383 3.1885 37 1 0.3362 -4.2072 1.8163 38 1 0.8748 -6.1858 0.4221 39 1 1.7413 -6.9169 1.7943 40 1 -2.2318 -9.4314 1.8121 41 1 0.5601 -2.0483 1.9259 42 1 1.2083 -2.4345 0.3033 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452126965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:25 Heat of formation + Delta-G solvation = -20.310168 kcal Electronic energy + Delta-G solvation = -17987.348173 eV Core-core repulsion = 15387.079295 eV Total energy + Delta-G solvation = -2600.268879 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.65432 -38.16815 -35.40278 -34.40741 -32.06094 -30.47274 -29.33918 -28.02651 -27.14092 -24.95604 -23.11656 -21.91795 -21.00383 -20.66968 -19.00382 -17.41324 -17.23583 -16.36648 -15.99837 -15.65164 -15.33383 -15.02845 -14.70099 -14.55940 -14.41371 -14.05093 -13.41178 -13.28255 -13.24434 -12.97770 -12.92473 -12.73950 -12.67973 -12.18112 -12.05328 -11.92681 -11.80584 -11.75135 -11.67442 -11.57109 -11.43373 -11.35432 -10.76247 -9.30649 -9.25370 -8.30757 -6.35142 1.34790 1.37410 1.50447 2.35666 2.73029 3.04770 3.26592 3.56745 3.72876 4.04841 4.14498 4.17903 4.23725 4.34189 4.41502 4.43587 4.50657 4.61697 4.67789 4.74147 4.81961 4.86699 4.89310 4.90196 4.96560 4.97523 5.02935 5.05962 5.08662 5.22266 5.28466 5.34222 5.40527 5.44736 5.61423 5.96437 6.06942 6.21397 6.23931 6.31070 6.72362 7.29674 8.86064 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030819 B = 0.005267 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.319061 B = 5315.037564 C = 5826.711465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 C -0.136 4.136 4 N -0.532 5.532 5 C 0.045 3.955 6 C -0.124 4.124 7 C 0.070 3.930 8 H 0.046 0.954 9 N -0.543 5.543 10 C 0.025 3.975 11 C 0.082 3.918 12 C 0.002 3.998 13 C -0.534 4.534 14 H 0.031 0.969 15 C 0.008 3.992 16 N -0.950 5.950 17 Si 0.951 3.049 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.249 1.249 21 C 0.059 3.941 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.023 0.977 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.016 0.984 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.267 0.733 41 H 0.062 0.938 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.681 17.610 -4.817 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.040 4.040 3 C -0.194 4.194 4 N -0.258 5.258 5 C -0.082 4.082 6 C -0.162 4.162 7 C -0.039 4.039 8 H 0.064 0.936 9 N -0.267 5.267 10 C -0.123 4.123 11 C -0.045 4.045 12 C -0.036 4.036 13 C -0.572 4.572 14 H 0.049 0.951 15 C -0.189 4.189 16 N -0.591 5.591 17 Si 0.774 3.226 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.173 1.173 21 C -0.069 4.069 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.403 17.758 -4.915 22.784 hybrid contribution -0.175 -1.348 0.086 1.362 sum 13.227 16.410 -4.829 21.623 Atomic orbital electron populations 1.21879 0.94430 1.01469 1.02652 1.21886 0.95832 0.96062 0.90218 1.21811 1.01235 0.93786 1.02536 1.63707 1.06988 1.16150 1.38914 1.22842 0.87481 0.95483 1.02424 1.22831 0.96676 0.95171 1.01543 1.22823 0.96461 0.87311 0.97328 0.93603 1.62102 1.02654 1.02004 1.59944 1.22421 0.93613 0.98620 0.97642 1.21839 0.90648 0.96388 0.95652 1.19420 0.94553 0.93256 0.96355 1.21405 1.06248 1.02082 1.27473 0.95095 1.25962 0.96149 0.98837 0.97955 1.70064 1.23463 1.18936 1.46633 0.85644 0.78840 0.78638 0.79449 1.18961 1.20826 1.17287 1.22824 0.96977 0.87638 0.99435 0.92217 0.90619 0.94105 0.94626 0.90995 0.92178 0.92050 0.91266 0.89642 0.90918 0.89319 0.95869 0.92040 0.89321 0.96604 0.92194 0.96211 0.96270 0.92412 0.91936 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.86 71.98 0.64 -2.47 16 2 C 0.07 1.42 2.23 44.91 0.10 1.52 16 3 C -0.14 -2.14 9.13 71.98 0.66 -1.49 16 4 N -0.53 -12.64 5.03 -860.36 -4.33 -16.96 16 5 C 0.05 0.89 6.15 86.65 0.53 1.42 16 6 C -0.12 -2.65 5.32 31.87 0.17 -2.48 16 7 C 0.07 1.98 2.70 46.39 0.13 2.11 16 8 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 9 N -0.54 -18.31 4.66 -888.37 -4.14 -22.46 16 10 C 0.02 0.73 9.14 127.69 1.17 1.90 16 11 C 0.08 3.43 4.78 86.30 0.41 3.85 16 12 C 0.00 0.09 3.96 29.85 0.12 0.21 16 13 C -0.53 -31.61 9.66 25.60 0.25 -31.36 16 14 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 15 C 0.01 0.47 5.47 84.65 0.46 0.93 16 16 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 17 Si 0.95 45.17 27.47 68.60 1.88 47.06 16 18 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 21 C 0.06 1.71 3.91 86.78 0.34 2.05 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.04 1.00 7.00 -2.39 -0.02 0.98 16 25 H 0.04 0.78 8.12 -2.39 -0.02 0.76 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.06 0.87 6.76 -2.39 -0.02 0.86 16 29 H 0.07 1.17 6.62 -2.39 -0.02 1.16 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.59 7.98 -2.39 -0.02 1.57 16 33 H 0.02 0.67 8.13 -2.39 -0.02 0.65 16 34 H 0.06 1.96 6.55 -2.39 -0.02 1.94 16 35 H 0.09 2.07 6.91 -2.39 -0.02 2.05 16 36 H 0.02 0.68 8.11 -2.39 -0.02 0.66 16 37 H 0.06 2.56 6.72 -2.39 -0.02 2.54 16 38 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 39 H 0.02 0.90 6.01 -2.39 -0.01 0.89 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.06 1.97 7.78 -2.39 -0.02 1.95 16 42 H 0.04 1.41 7.35 -2.39 -0.02 1.39 16 Total: -1.00 -65.89 317.72 -0.42 -66.32 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.89 Total: 10.06 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 4.97 Total: -23.82 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -8.17 Total: -99.62 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Total: -65.89 -0.42 -66.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452126965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.006 kcal (2) G-P(sol) polarization free energy of solvation -65.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds