Wall clock time and date at job start Mon Mar 30 2020 17:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3 7 7 C 1.50702 * 109.47129 * 65.32211 * 6 5 4 8 8 O 1.21282 * 119.99697 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99905 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99887 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.46931 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00639 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99689 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00357 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99987 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47053 * 89.99797 * 15 13 11 17 17 H 1.48494 * 109.47065 * 210.00034 * 15 13 11 18 18 H 1.48498 * 109.47078 * 330.00284 * 15 13 11 19 19 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 20 20 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 21 21 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 22 22 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 23 23 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 24 24 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 25 25 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 26 26 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 27 27 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 28 28 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 29 29 H 1.09004 * 109.46994 * 185.31369 * 6 5 4 30 30 H 1.08994 * 109.47428 * 305.31237 * 6 5 4 31 31 H 0.97001 * 120.00467 * 359.97438 * 9 7 6 32 32 H 1.08996 * 109.47035 * 299.99465 * 10 9 7 33 33 H 1.08995 * 109.46927 * 60.00036 * 10 9 7 34 34 H 0.97004 * 119.99915 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.50326 * 182.41022 * 19 5 4 36 36 H 1.08996 * 109.53714 * 62.30612 * 19 5 4 37 37 H 1.09005 * 109.46673 * 294.18102 * 20 2 1 38 38 H 1.09003 * 109.46587 * 54.14643 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 5.6361 0.4450 0.8407 7 6 6.2395 1.8210 0.9573 8 8 5.5260 2.7808 1.1591 9 7 7.5717 1.9851 0.8363 10 6 8.1582 3.3229 0.9491 11 6 9.6526 3.2322 0.7780 12 1 10.1190 2.2740 0.6023 13 6 10.4246 4.3726 0.8446 14 7 9.8567 5.5397 1.0571 15 14 12.2771 4.2604 0.6318 16 1 12.6203 4.4112 -0.8051 17 1 12.9314 5.3404 1.4131 18 1 12.7521 2.9402 1.1181 19 6 3.5182 -0.8715 1.0210 20 6 1.9952 -0.7707 1.1338 21 1 -0.3634 0.4471 0.9253 22 1 -0.3633 -1.0249 -0.0754 23 1 -0.3633 0.5778 -0.8499 24 1 1.5634 1.9257 -0.8330 25 1 1.7324 1.8608 0.9376 26 1 3.9099 2.3512 -0.1310 27 1 3.7820 0.8572 -1.0905 28 1 3.8886 1.0355 1.9561 29 1 6.0519 -0.2007 1.6142 30 1 5.8648 0.0298 -0.1408 31 1 8.1422 1.2175 0.6745 32 1 7.7421 3.9684 0.1757 33 1 7.9298 3.7381 1.9307 34 1 10.3999 6.3420 1.1043 35 1 3.9098 -1.4302 1.8710 36 1 3.7814 -1.3842 0.0959 37 1 1.7324 -0.2708 2.0661 38 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487509541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:28 Heat of formation + Delta-G solvation = -57.719947 kcal Electronic energy + Delta-G solvation = -17236.367634 eV Core-core repulsion = 14498.643451 eV Total energy + Delta-G solvation = -2737.724183 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.56899 -38.23416 -34.55193 -33.91950 -32.30953 -30.78044 -29.46625 -27.17450 -25.26354 -23.12874 -22.77682 -21.58385 -19.66947 -19.44570 -16.99822 -15.92911 -15.49943 -15.21946 -15.10856 -14.94776 -14.55922 -14.28820 -13.70134 -13.40020 -13.01393 -12.50509 -12.40821 -12.23760 -12.04336 -11.91233 -11.54182 -11.32723 -11.10881 -10.95055 -10.86990 -10.53833 -10.35284 -10.30036 -10.15004 -9.38247 -8.88191 -8.71592 -8.40732 -7.83591 -6.15842 -4.22641 3.24619 3.30695 3.33171 3.44339 3.88210 4.13387 4.38682 4.79442 4.87828 4.94906 5.10688 5.20214 5.25945 5.32205 5.39544 5.48883 5.57390 5.66692 5.69102 5.72948 5.74403 5.83532 5.96460 6.08181 6.09791 6.22138 6.54603 6.59993 7.00249 7.05092 7.33347 7.48921 7.53897 7.68829 7.98777 8.67239 8.80340 9.15947 9.44370 10.94375 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.066847 B = 0.003952 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.765523 B = 7082.454991 C = 7335.565506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.057 3.943 4 C -0.116 4.116 5 C -0.070 4.070 6 C -0.137 4.137 7 C 0.497 3.503 8 O -0.556 6.556 9 N -0.715 5.715 10 C 0.249 3.751 11 C -0.543 4.543 12 H 0.063 0.937 13 C 0.063 3.937 14 N -0.886 5.886 15 Si 0.904 3.096 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.113 4.113 20 C 0.057 3.943 21 H 0.022 0.978 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.033 0.967 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.390 0.610 32 H 0.026 0.974 33 H 0.025 0.975 34 H 0.266 0.734 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.682 -13.255 -1.142 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.070 4.070 4 C -0.154 4.154 5 C -0.089 4.089 6 C -0.177 4.177 7 C 0.282 3.718 8 O -0.436 6.436 9 N -0.363 5.363 10 C 0.128 3.872 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.141 4.141 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.151 4.151 20 C -0.071 4.071 21 H 0.041 0.959 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.222 0.778 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.968 -12.560 -1.400 18.837 hybrid contribution 1.051 0.074 0.576 1.201 sum -12.918 -12.486 -0.823 17.985 Atomic orbital electron populations 1.22341 0.87787 1.01863 1.00356 1.61976 1.07145 1.14547 1.43341 1.22114 0.96360 0.88217 1.00321 1.21771 0.93219 1.02558 0.97849 1.20904 0.92770 0.95240 1.00014 1.21732 0.96365 0.96010 1.03624 1.20536 0.83022 0.90723 0.77522 1.90608 1.60576 1.42337 1.50040 1.46501 1.06406 1.12720 1.70692 1.19078 0.92482 0.78113 0.97495 1.21244 0.91352 0.94122 1.51418 0.91930 1.24959 0.99287 0.95066 0.94747 1.69978 1.35996 0.98345 1.48027 0.86418 0.84410 0.77878 0.78225 1.20455 1.21016 1.19748 1.21675 0.94027 0.97077 1.02275 1.22067 0.95813 0.97796 0.91425 0.95904 0.91628 0.91492 0.91014 0.94903 0.89019 0.91875 0.90804 0.89589 0.89445 0.77774 0.95620 0.95661 0.92472 0.91583 0.91065 0.95028 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.59 60.07 0.58 0.81 16 2 N -0.55 -6.26 4.91 -242.95 -1.19 -7.46 16 3 C 0.06 0.73 5.46 -3.83 -0.02 0.71 16 4 C -0.12 -1.66 5.09 -26.65 -0.14 -1.80 16 5 C -0.07 -0.95 1.90 -90.50 -0.17 -1.12 16 6 C -0.14 -1.91 5.18 -27.88 -0.14 -2.05 16 7 C 0.50 9.76 7.56 -10.99 -0.08 9.67 16 8 O -0.56 -12.98 13.99 5.56 0.08 -12.91 16 9 N -0.72 -15.09 5.55 -61.47 -0.34 -15.43 16 10 C 0.25 6.65 5.43 -5.19 -0.03 6.63 16 11 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 12 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 15 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 C -0.11 -1.21 5.38 -26.65 -0.14 -1.35 16 20 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 21 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 24 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.09 1.59 6.04 -51.93 -0.31 1.27 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.13 7.95 -51.93 -0.41 0.71 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -31.39 306.47 -8.22 -39.61 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.51 Total: 2.62 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.59 Total: -1.43 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.80 Total: -48.42 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.39 -8.22 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487509541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.111 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds